View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2885R-Insertion-6 (Length: 324)

Name: NF2885R-Insertion-6
Description: NF2885R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2885R-Insertion-6
NF2885R-Insertion-6
[»] chr5 (11 HSPs)
chr5 (9-324)||(33821527-33821842)
chr5 (126-300)||(33734221-33734395)
chr5 (140-223)||(33762760-33762843)
chr5 (126-214)||(33748779-33748867)
chr5 (126-214)||(33834899-33834987)
chr5 (139-223)||(33904390-33904474)
chr5 (137-222)||(33679811-33679896)
chr5 (137-223)||(33865881-33865967)
chr5 (137-216)||(33698534-33698613)
chr5 (278-324)||(33748669-33748715)
chr5 (13-50)||(33734534-33734571)
[»] scaffold0023 (1 HSPs)
scaffold0023 (131-235)||(114199-114303)
[»] scaffold0247 (2 HSPs)
scaffold0247 (127-226)||(22142-22241)
scaffold0247 (269-313)||(22284-22328)
[»] scaffold0193 (2 HSPs)
scaffold0193 (127-214)||(25206-25293)
scaffold0193 (13-52)||(24394-24433)
[»] chr8 (2 HSPs)
chr8 (136-214)||(21305875-21305953)
chr8 (262-313)||(21305776-21305827)
[»] chr7 (2 HSPs)
chr7 (139-225)||(5471194-5471280)
chr7 (268-324)||(5471317-5471373)
[»] scaffold0001 (1 HSPs)
scaffold0001 (139-225)||(148773-148859)


Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 9 - 324
Target Start/End: Complemental strand, 33821842 - 33821527
Alignment:
Q  9 atcataaggttacacaatctcctagggaataggtaagcttccaattagggcaatgcatgtagcctagctagaattaagtatgatgtattttttagataac 108  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33821842 atcataaggttacacaatctcctggggaataggtaagcttccaattagggaaatgcatgtagcctagctagaattaagtatgatgtattctttagataac 33821743  T
Q  109 attttagctaatgtatttatacatataatatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacaca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33821742 attttagctaatgtatttatacatataatatagatggtcattgattgctgcaaggcttcctagtagaacggctaatgatgtgaaaaactattggaacaca 33821643  T
Q  209 catttgcggaagaaggttctttcagaatcagtagnnnnnnnnnnnnnngagagacctgaggaaacaatgaaagctcatgaagttattaaacctcgaccta 308  Q
    ||||||||||||||||||||||||||||||||||              ||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  33821642 catttgcggaagaaggttctttcagaatcagtagaaaaaaatgaaaaagagagacctaaggaaacaatgaaagctcatgaagttattatacctcgaccta 33821543  T
Q  309 taactctttcaactca 324  Q
    ||||||||||||||||    
T  33821542 taactctttcaactca 33821527  T

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Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 126 - 300
Target Start/End: Complemental strand, 33734395 - 33734221
Alignment:
Q  126 tatacatataatatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcggaagaaggt 225  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||    
T  33734395 tatacatataatatagatggtcattgattgctgcaaggcttcctggtagaactgctaatgatgtgaaaaacttttggcacacacatttgcggaagaaggt 33734296  T
Q  226 tctttcagaatcagtagnnnnnnnnnnnnnngagagacctgaggaaacaatgaaagctcatgaagttattaaacc 300  Q
    | |||||||| ||  ||              |||| |||| ||||||||||||||||||||||||||||||||||    
T  33734295 tgtttcagaaacaaaagaaaagaaagaaaaagagaaacctaaggaaacaatgaaagctcatgaagttattaaacc 33734221  T

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Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 33762843 - 33762760
Alignment:
Q  140 agatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcggaagaag 223  Q
    |||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||| ||||| ||||||||||||||    
T  33762843 agatggtcattgattgctgcaaggcttcccggtagaacagcgaatgatgtgaaaaactattggcacacaaatttgcggaagaag 33762760  T

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Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 126 - 214
Target Start/End: Complemental strand, 33748867 - 33748779
Alignment:
Q  126 tatacatataatatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttg 214  Q
    |||||||||||||||||||| | |||||||||||||| ||||   ||||||||||||||||||||||||||||||||||||| ||||||    
T  33748867 tatacatataatatagatggacgttgattgctgcaagacttcaaggtagaacagctaatgatgtgaaaaactattggaacactcatttg 33748779  T

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Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 126 - 214
Target Start/End: Complemental strand, 33834987 - 33834899
Alignment:
Q  126 tatacatataatatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttg 214  Q
    |||||||||||||||||||| | |||||||||||||| ||||   ||||||||||||||||||||||||||||||||||||| ||||||    
T  33834987 tatacatataatatagatggacgttgattgctgcaagacttcaaggtagaacagctaatgatgtgaaaaactattggaacactcatttg 33834899  T

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Target: chr5; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 33904474 - 33904390
Alignment:
Q  139 tagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcggaagaag 223  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||| || |||||| ||||||||||| | ||||||    
T  33904474 tagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacacatttgagaaagaag 33904390  T

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Target: chr5; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 33679896 - 33679811
Alignment:
Q  137 tatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcggaagaa 222  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||||||||||| || |||||| ||||| ||||||| |||||    
T  33679896 tatagatggtcattgattgctgcgaggcttccgggtagaacagctaatgatgtgaagaattattggcacacaaatttgcgcaagaa 33679811  T

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Target: chr5; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 33865967 - 33865881
Alignment:
Q  137 tatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcggaagaag 223  Q
    |||||||||||||||||||||||||| || ||  |||||||||||||||||||||| || |||||| |||||||||| || ||||||    
T  33865967 tatagatggtcattgattgctgcaagactcccgggtagaacagctaatgatgtgaagaattattggcacacacatttacgcaagaag 33865881  T

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Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 33698613 - 33698534
Alignment:
Q  137 tatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcg 216  Q
    ||||||||||| ||||||||||||||||||||  |||| ||||||||||||||||| || |||||| ||||| |||||||    
T  33698613 tatagatggtctttgattgctgcaaggcttccgggtaggacagctaatgatgtgaagaattattggcacacaaatttgcg 33698534  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 324
Target Start/End: Complemental strand, 33748715 - 33748669
Alignment:
Q  278 aaagctcatgaagttattaaacctcgacctataactctttcaactca 324  Q
    |||||||||||||||||||||||||| ||  ||||| ||||||||||    
T  33748715 aaagctcatgaagttattaaacctcgtccattaactttttcaactca 33748669  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 33734571 - 33734534
Alignment:
Q  13 taaggttacacaatctcctagggaataggtaagcttcc 50  Q
    ||||||||||||| || |||||||||||||||||||||    
T  33734571 taaggttacacaaacttctagggaataggtaagcttcc 33734534  T

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Target: scaffold0023 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 131 - 235
Target Start/End: Original strand, 114199 - 114303
Alignment:
Q  131 atataatatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcggaagaaggttcttt 230  Q
    |||||||||||||||||||||||||| | |||||||||   |||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| |||    
T  114199 atataatatagatggtcattgattgcgggaaggcttccggctagaacagctaatgatgtcaaaaactattggcacacacatttgaggaagaaggttgttt 114298  T
Q  231 cagaa 235  Q
     ||||    
T  114299 tagaa 114303  T

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Target: scaffold0247 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 22142 - 22241
Alignment:
Q  127 atacatataatatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcggaagaaggtt 226  Q
    ||||||||  || ||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||| |||||||| || |||||||||    
T  22142 atacatatcgtacagatggtcattgattgctggaaggcttccaggtagaacagctaatgatgtgaaaaactattggaatacacatttacgaaagaaggtt 22241  T

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Target: scaffold0247; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 22284 - 22328
Alignment:
Q  269 gaaacaatgaaagctcatgaagttattaaacctcgacctataact 313  Q
    |||||||||||||||||||| |||||||||||||| |||||||||    
T  22284 gaaacaatgaaagctcatgaggttattaaacctcggcctataact 22328  T

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Target: scaffold0193 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 214
Target Start/End: Original strand, 25206 - 25293
Alignment:
Q  127 atacatataatatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttg 214  Q
    ||||||||||||||||||| |||||||||||||||| ||||   ||||| ||||||||||||||||||||||||||||||| ||||||    
T  25206 atacatataatatagatggacattgattgctgcaagacttcagggtagatcagctaatgatgtgaaaaactattggaacacccatttg 25293  T

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Target: scaffold0193; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 24394 - 24433
Alignment:
Q  13 taaggttacacaatctcctagggaataggtaagcttccaa 52  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  24394 taaggttacacaacctcctagggaataggtaagcgtccaa 24433  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 21305953 - 21305875
Alignment:
Q  136 atatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttg 214  Q
    ||||||||||||||||||||||| |||||||||  |||||||||||||||||||||| ||||||||| ||||| |||||    
T  21305953 atatagatggtcattgattgctggaaggcttccgggtagaacagctaatgatgtgaagaactattggcacacaaatttg 21305875  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 313
Target Start/End: Complemental strand, 21305827 - 21305776
Alignment:
Q  262 acctgaggaaacaatgaaagctcatgaagttattaaacctcgacctataact 313  Q
    |||| ||||||| ||||||||||||||||||||||||||||| |||||||||    
T  21305827 acctaaggaaaccatgaaagctcatgaagttattaaacctcgtcctataact 21305776  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 5471194 - 5471280
Alignment:
Q  139 tagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcggaagaaggt 225  Q
    |||||||||||||||||||| |||||||||  ||||||||||||||  |||||||||||||||||||||||| |||  |||||||||    
T  5471194 tagatggtcattgattgctggaaggcttccgggtagaacagctaatagtgtgaaaaactattggaacacacacttgttgaagaaggt 5471280  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 5471317 - 5471373
Alignment:
Q  268 ggaaacaatgaaagctcatgaagttattaaacctcgacctataactctttcaactca 324  Q
    ||| ||||||||||||||  |||||||||||||| ||||||||||| ||||||||||    
T  5471317 ggagacaatgaaagctcaccaagttattaaacctagacctataactttttcaactca 5471373  T

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Target: scaffold0001 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 139 - 225
Target Start/End: Complemental strand, 148859 - 148773
Alignment:
Q  139 tagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcggaagaaggt 225  Q
    |||||||||||||||||||| |||||||||  | ||||||||||||||||| || ||||||||| ||||||| ||||  ||||||||    
T  148859 tagatggtcattgattgctggaaggcttccgggaagaacagctaatgatgtaaagaactattggcacacacacttgcacaagaaggt 148773  T

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