View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2885_high_4 (Length: 239)
Name: NF2885_high_4
Description: NF2885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2885_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 30634383 - 30634603
Alignment:
| Q |
1 |
attcttgtcttaaagcactgtaaaccggtcccaaaagaaacgtgaactgtgtacctgaatccaccattgtctgacccgcaccggtatgatccggtgcgaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30634383 |
attcttgtcttaaagcactgtaaaccggtcccaaaagaaacgtgaactgtgtacccgaatccaccattgtctgacccgcaccggtatgatccggtgcgaa |
30634482 |
T |
|
| Q |
101 |
aattgttttgggtaattggagcagcttcttcccgacccgtattccctcgagtcgtactgtgtatgcgactctatcgaaatagggtaatggggttgtgatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30634483 |
aattgttttgggtaattggagcagcttcttcccgacccgtattccctcgagtcgtactgtgtatgcgactcgatcgaaatagggtaatggggttgtgatt |
30634582 |
T |
|
| Q |
201 |
tttaccattggtgtgtatttc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
30634583 |
tttaccattggtgtgtatttc |
30634603 |
T |
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