View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2885_low_1 (Length: 362)
Name: NF2885_low_1
Description: NF2885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2885_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 344
Target Start/End: Complemental strand, 37620793 - 37620439
Alignment:
| Q |
13 |
gagaaactatacggtatgaattagatc--aaatctacctaattattggaggtttgtttgatgtggtatgtgctttggaagagattt-------------- |
96 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37620793 |
gagaaactatacggtatgaattagaccccaaatctacctaattattggaggtttgtttgatgtggtatgtgctttggaagagatttcgttaaaagtttga |
37620694 |
T |
|
| Q |
97 |
-------taattttgtgtgggaggacatagtctgcattggaggctaagaatttgataccatccatgattaagagattttgttccttaatctctttaaatt |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37620693 |
gagattttaattttgtgtgggaggacatagtctgcattggaggctaagaatttgataccatccatgattaagagattttgttccttaatctctttaaatt |
37620594 |
T |
|
| Q |
190 |
gttttctaatctcttgatatgacacctcgattgaattgtcatgaagttttctaaaaggctcttttgaaaactatgatgcctaccaatttgttggagagtt |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37620593 |
gttttctaatctcttgatatgacacctcgattgaattgtcatgaagttttctaaaaggctcttttgaaaactatgatgcctaccaatttgttggagagtt |
37620494 |
T |
|
| Q |
290 |
tgaatagtgggagattttggattgtgttaaattcgctaggcttccagttccaacc |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37620493 |
tgaatagtgggagattttggattgtgttaaattcgctaggcttccagttccaacc |
37620439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 240
Target Start/End: Complemental strand, 13967627 - 13967521
Alignment:
| Q |
132 |
gctaagaatttgataccatccatgattaagagattttgttccttaatctctttaaattgttttctaatctcttgatatgacacctcgattgaattgtcat |
231 |
Q |
| |
|
||||| |||| |||| ||||||| || |||||||||||||| ||||| ||||| |||||| | || ||||||| ||||| | | ||||| ||| |||| |
|
|
| T |
13967627 |
gctaaaaattggatagcatccattataaagagattttgttctttaatatctttgaattgtctccttatctctt--catgacgcttagattgtattatcat |
13967530 |
T |
|
| Q |
232 |
gaagttttc |
240 |
Q |
| |
|
||||||||| |
|
|
| T |
13967529 |
gaagttttc |
13967521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University