View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2886_high_4 (Length: 245)
Name: NF2886_high_4
Description: NF2886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2886_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 1036503 - 1036268
Alignment:
| Q |
1 |
caatattaccttctatgtctacctgccatttataattcatccattctccaaataggcacacagtatattaagatccctaaaaagaatgaggaacatattg |
100 |
Q |
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| T |
1036503 |
caatattaccttctatggctacctgacatttatatttcatccattctccaaataggcacagagtatattaagatccctaaaaagaacgaggaacatattg |
1036404 |
T |
|
| Q |
101 |
tggttatagtataaacatatgctctccaagggtgctcgctttctctcatttcgttgaactcggaaacaaaggtagagacagtactcaaacaacccaaaag |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| || || |
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| T |
1036403 |
tgattatagtataaacatatgctctccaagggtgctcgctttctctcatttcattgaactcggcaacaaaggtagagacagtactcaaacaaccgaacag |
1036304 |
T |
|
| Q |
201 |
gccaaactgtatgccttttaaaatagtatcacaatc |
236 |
Q |
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|||||||||||||||||||| ||||||||||||||| |
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| T |
1036303 |
gccaaactgtatgccttttacaatagtatcacaatc |
1036268 |
T |
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