View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2886_low_1 (Length: 640)

Name: NF2886_low_1
Description: NF2886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2886_low_1
NF2886_low_1
[»] chr4 (6 HSPs)
chr4 (382-624)||(54602184-54602431)
chr4 (1-161)||(54602494-54602657)
chr4 (1-107)||(39388813-39388919)
chr4 (1-82)||(12024911-12024992)
chr4 (350-423)||(35431416-35431489)
chr4 (341-390)||(46513854-46513903)
[»] chr7 (16 HSPs)
chr7 (4-157)||(46526368-46526521)
chr7 (1-155)||(6272805-6272962)
chr7 (1-138)||(41964345-41964482)
chr7 (1-157)||(42014150-42014308)
chr7 (263-390)||(6272569-6272698)
chr7 (263-423)||(46526114-46526263)
chr7 (1-94)||(10554623-10554716)
chr7 (3-107)||(45075574-45075679)
chr7 (7-70)||(31593840-31593903)
chr7 (279-390)||(42014431-42014534)
chr7 (382-422)||(6272511-6272551)
chr7 (341-390)||(1298976-1299025)
chr7 (279-338)||(45075374-45075433)
chr7 (22-99)||(11405164-11405241)
chr7 (350-390)||(45166388-45166428)
chr7 (350-390)||(47863874-47863914)
[»] chr3 (19 HSPs)
chr3 (1-157)||(48164820-48164975)
chr3 (1-157)||(45034687-45034843)
chr3 (1-107)||(177824-177930)
chr3 (1-101)||(52561103-52561203)
chr3 (1-157)||(18942949-18943107)
chr3 (285-390)||(18912112-18912217)
chr3 (24-107)||(18911880-18911963)
chr3 (1-79)||(55150850-55150928)
chr3 (263-329)||(45034945-45035013)
chr3 (25-101)||(10817-10893)
chr3 (263-388)||(18942724-18942844)
chr3 (26-80)||(54315312-54315366)
chr3 (341-390)||(33942636-33942685)
chr3 (263-329)||(48165080-48165148)
chr3 (125-157)||(18911983-18912015)
chr3 (22-72)||(13825483-13825533)
chr3 (350-390)||(177539-177579)
chr3 (350-390)||(2282221-2282261)
chr3 (354-390)||(48165151-48165187)
[»] chr1 (14 HSPs)
chr1 (1-157)||(31387543-31387698)
chr1 (1-155)||(42463576-42463730)
chr1 (1-157)||(4911887-4912043)
chr1 (1-100)||(27106034-27106133)
chr1 (1-107)||(15291590-15291696)
chr1 (1-101)||(18242968-18243068)
chr1 (2-157)||(46192244-46192399)
chr1 (1-53)||(42055805-42055857)
chr1 (1-70)||(50914893-50914962)
chr1 (341-390)||(28865799-28865848)
chr1 (263-311)||(4911733-4911783)
chr1 (338-390)||(7407366-7407418)
chr1 (350-390)||(36354668-36354708)
chr1 (350-386)||(45475444-45475480)
[»] chr5 (9 HSPs)
chr5 (1-157)||(10825665-10825822)
chr5 (1-101)||(7262950-7263051)
chr5 (1-85)||(23067192-23067276)
chr5 (1-84)||(19876595-19876678)
chr5 (3-101)||(37980269-37980366)
chr5 (341-390)||(6556629-6556678)
chr5 (341-390)||(26752108-26752157)
chr5 (1-69)||(24169559-24169627)
chr5 (279-329)||(7263218-7263268)
[»] chr8 (11 HSPs)
chr8 (3-157)||(41269876-41270032)
chr8 (1-107)||(42095768-42095874)
chr8 (1-157)||(44115870-44116027)
chr8 (1-100)||(8317050-8317149)
chr8 (1-79)||(20477648-20477726)
chr8 (338-390)||(17443241-17443293)
chr8 (22-80)||(18701199-18701257)
chr8 (279-390)||(41270157-41270260)
chr8 (341-390)||(26702788-26702837)
chr8 (341-390)||(44322926-44322975)
chr8 (341-390)||(45120633-45120682)
[»] scaffold1043 (1 HSPs)
scaffold1043 (1-107)||(2968-3074)
[»] chr6 (6 HSPs)
chr6 (1-151)||(5620333-5620486)
chr6 (3-100)||(19268763-19268860)
chr6 (1-107)||(33523450-33523556)
chr6 (350-390)||(31860625-31860665)
chr6 (279-338)||(2946413-2946472)
chr6 (350-390)||(32264111-32264151)
[»] chr2 (14 HSPs)
chr2 (1-157)||(19508526-19508683)
chr2 (1-161)||(26393765-26393933)
chr2 (1-100)||(31501145-31501244)
chr2 (1-107)||(40612853-40612959)
chr2 (1-101)||(4174790-4174890)
chr2 (1-72)||(34458529-34458600)
chr2 (1-79)||(2777161-2777239)
chr2 (1-79)||(2119882-2119960)
chr2 (22-80)||(15738244-15738302)
chr2 (22-60)||(26172745-26172783)
chr2 (341-390)||(13331797-13331846)
chr2 (23-100)||(29902286-29902363)
chr2 (279-338)||(26394031-26394090)
chr2 (118-157)||(31501083-31501122)
[»] scaffold0688 (1 HSPs)
scaffold0688 (1-101)||(5443-5543)
[»] scaffold0006 (1 HSPs)
scaffold0006 (350-390)||(19092-19132)


Alignment Details
Target: chr4 (Bit Score: 178; Significance: 1e-95; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 382 - 624
Target Start/End: Complemental strand, 54602431 - 54602184
Alignment:
Q  382 gttaactgcaggtgtaacattgagcggttgttaacggccgctaaaatttattttagtattttactactgttaatatgaagtttttag------aaaaaca 475  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||    ||||||||||||||||| ||||||||| ||||||| |       |||| ||    
T  54602431 gttaactgccggtgtaacattgagcggttgttaacggccgctgaagac-attttagtattttactaatgttaatataaagttttcatggtcaaaaaagca 54602333  T
Q  476 attttctaaatctataatcttaatctcatcatacttgtgtttcaacaaattgccgaatctacatctaaaatcacaaacgatatcatcgatttgatgaatt 575  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54602332 attttctaaatctataatcttaatctcatcatacttgtgtttcaacaaattgccgaatctacatctaaaatcacaaacgatatcatcgatttgatgaatt 54602233  T
Q  576 tacgatctaaaatcacaaacgaaattgattttatcgcttgatatgcctg 624  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  54602232 tacgatctaaaatcacaaacgaaattgattttatcgcttgatatgcctg 54602184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 54602657 - 54602494
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  54602657 aggaggtgatgcagattgttggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctaggcagcagggttgatt 54602558  T
Q  101 aagattaagg--nnnnnnnatgtac-ttttttactgtgatgtataattatgacatgttccatac 161  Q
    || |||||||          ||||| ||||||||||||||||||||||||||||||||||||||    
T  54602557 aaaattaaggtttttttttttgtactttttttactgtgatgtataattatgacatgttccatac 54602494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 39388919 - 39388813
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||||| |||||| |||||||||||||||| |||||||||| ||||||||||| |||| |||||||  |||||||||||  || ||||||||||    
T  39388919 aggaggtgatgcggatagccggtactggtcgccctgaccttacgtatcagattgccaggtggcgtagggggctaaggcatgctaggcagtagggttgatt 39388820  T
Q  101 aagatta 107  Q
    | |||||    
T  39388819 atgatta 39388813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 12024992 - 12024911
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgc 82  Q
    |||||||||||| |||| | ||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||    
T  12024992 aggaggtgatgcggatacccggtactggtcgccctgcccttacgtatcagattaccaggcggcacagggggccgaggcatgc 12024911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 423
Target Start/End: Original strand, 35431416 - 35431489
Alignment:
Q  350 tgcactgattctgttaactggtgtgaacggtagttaactgcaggtgtaacattgagcggttgttaacggccgct 423  Q
    ||||||||| |||||||||||||||| |   |||||||||| || |||  ||||| ||||||||||| ||||||    
T  35431416 tgcactgatgctgttaactggtgtgagcatcagttaactgccggcgtattattgaacggttgttaactgccgct 35431489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 390
Target Start/End: Complemental strand, 46513903 - 46513854
Alignment:
Q  341 agtggagagtgcactgattctgttaactggtgtgaacggtagttaactgc 390  Q
    |||| ||| |||| || |||||||||||||||||||||| ||||||||||    
T  46513903 agtgcagactgcattggttctgttaactggtgtgaacggcagttaactgc 46513854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 4 - 157
Target Start/End: Complemental strand, 46526521 - 46526368
Alignment:
Q  4 aggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgattaag 103  Q
    ||||||||| |||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||| |    
T  46526521 aggtgatgcggatagccggtactagtcgccctgcccttacgtatcagattgccaggcggcgcagggggccgaggcatgctaggcagcagggttgattatg 46526422  T
Q  104 attaaggnnnnnnnatgtacttttttactgtgatgtataattatgacatgttcc 157  Q
    |||| ||       ||||||||||||||||||| ||||||||||||||||||||    
T  46526421 attagggtttttttatgtacttttttactgtgacgtataattatgacatgttcc 46526368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 6272962 - 6272805
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||||| |||||| |||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||  || | | ||||||    
T  6272962 aggaggtgatgcggatagccggtactggtcaccctgcccttacgtatcagatttccaggcggcgcagggggccgaggcatgctaggcagtaagattgatt 6272863  T
Q  101 aagattaagg---nnnnnnnatgtacttttttactgtgatgtataattatgacatgtt 155  Q
    | ||||||||          ||||||||||||||||||||||||||||||||||||||    
T  6272862 atgattaaggttttttttttatgtacttttttactgtgatgtataattatgacatgtt 6272805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 41964345 - 41964482
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||| || ||||||||| |||||||||||||  || ||||||||||    
T  41964345 aggaggtgatgcggatagccggtactggtcgccctgcccttacgtatcagattgccagacgacgcagggggtcgaggcatgctaggcagtagggttgatt 41964444  T
Q  101 aagattaaggnnnnnnnatgtacttttttactgtgatg 138  Q
    | |||||||        |||||||||||||||||||||    
T  41964445 atgattaagctttttttatgtacttttttactgtgatg 41964482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 42014150 - 42014308
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||||| | |||| ||||||||||||||| ||||||||||| ||||||| |||||| ||||||||||||||||||||||  ||||| |||||||    
T  42014150 aggaggtgatgcgggtagccggtactggtcgccctacccttacgtatcagattgctaggcggagcagggggccgaggcatgctaggcagcagagttgatt 42014249  T
Q  101 aagattaagg--nnnnnnnatgtacttttttactgtgatgtataattatgacatgttcc 157  Q
    | ||||| ||         ||||||||||||||||| ||||||||||||||||| ||||    
T  42014250 atgattagggtttttttttatgtacttttttactgttatgtataattatgacatattcc 42014308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 263 - 390
Target Start/End: Complemental strand, 6272698 - 6272569
Alignment:
Q  263 cccgacatatcctagtt--ttactttaatttccaattggatgcaaaaataggccagagttcctggaaaacctagtgcactagtggagagtgcactgattc 360  Q
    ||||||||||||| |||  |||| |||||||||||||| ||||||||| |||||| ||||||| ||||| | ||||||||||||||||||||| || |||    
T  6272698 cccgacatatcctggttatttacattaatttccaattgaatgcaaaaacaggccaaagttcctagaaaaaccagtgcactagtggagagtgcattggttc 6272599  T
Q  361 tgttaactggtgtgaacggtagttaactgc 390  Q
    |||||||||||||||| |  ||||||||||    
T  6272598 tgttaactggtgtgaatgacagttaactgc 6272569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 263 - 423
Target Start/End: Complemental strand, 46526263 - 46526114
Alignment:
Q  263 cccgacatatcctagtt--ttactttaatttccaattggatgcaaaaataggccagagttcctggaaaacctagtgcactagtggagagtgcactgattc 360  Q
    ||||||||||||| |||  || |||||||||||||||||||||||||| |||||| ||||||| ||||| | |||||||||||| |||||||            
T  46526263 cccgacatatcctggttatttgctttaatttccaattggatgcaaaaacaggccaaagttcctagaaaaaccagtgcactagtgcagagtgc-------- 46526172  T
Q  361 tgttaactggtgtgaacggtagttaactgcaggtgtaacattgagcggttgttaacggccgct 423  Q
         ||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||    
T  46526171 -----actggtgtgaacggtagttaactgccgccgtaacattgagcggttgttaacggccgct 46526114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 10554623 - 10554716
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcaggg 94  Q
    ||||||||||| |||||||| ||||| |||||||||||||||| ||| | ||||||||||| |||||||| | |||||| | ||| ||||||||    
T  10554623 aggaggtgatgtagatagctagtactagtcgccctgcccttacttatcaaattgccaggcgacgcaggggccagaggcagggtagatagcaggg 10554716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 45075679 - 45075574
Alignment:
Q  3 gaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgca-gggggccgaggcatgctagttagcagggttgatta 101  Q
    |||||||||| |||||| ||||||| || || |  |||||||||| |||||||||||||||| | ||||| |||||||||||||  | ||||||||||||    
T  45075679 gaggtgatgcggatagccggtactgatcaccatatccttacgtatcagattgccaggcggcgtagggggggcgaggcatgctaggcaacagggttgatta 45075580  T
Q  102 agatta 107  Q
     |||||    
T  45075579 tgatta 45075574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 31593840 - 31593903
Alignment:
Q  7 tgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggg 70  Q
    |||||| ||||||| ||||| |||||||||||||||| ||| ||||| ||||||||||||||||    
T  31593840 tgatgcggatagctagtactagtcgccctgcccttacttatcagatttccaggcggcgcagggg 31593903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 279 - 390
Target Start/End: Original strand, 42014431 - 42014534
Alignment:
Q  279 tttactttaatttccaattggatgcaaaaataggccagagttcctggaaaacctagtgcactagtggagagtgcactgattctgttaactggtgtgaacg 378  Q
    ||||||||||||| |||||||||||||||| || ||| |||||||||||||        || |||| | ||||||||  |||||||||||||||||||||    
T  42014431 tttactttaatttgcaattggatgcaaaaacagaccaaagttcctggaaaa--------accagtgcatagtgcactagttctgttaactggtgtgaacg 42014522  T
Q  379 gtagttaactgc 390  Q
      ||||||||||    
T  42014523 acagttaactgc 42014534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 382 - 422
Target Start/End: Complemental strand, 6272551 - 6272511
Alignment:
Q  382 gttaactgcaggtgtaacattgagcggttgttaacggccgc 422  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  6272551 gttaactgcaggcgtaacattgagcggttgttaacggccgc 6272511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 1298976 - 1299025
Alignment:
Q  341 agtggagagtgcactgattctgttaactggtgtgaacggtagttaactgc 390  Q
    |||| ||| ||||||| |||||||||||||||||||||| ||||||||||    
T  1298976 agtgcagactgcactggttctgttaactggtgtgaacggcagttaactgc 1299025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 338
Target Start/End: Complemental strand, 45075433 - 45075374
Alignment:
Q  279 tttactttaatttccaattggatgcaaaaataggccagagttcctggaaaacctagtgca 338  Q
    ||||||||||||| |||||||||||||||| | | |||| ||||||||||| | ||||||    
T  45075433 tttactttaatttgcaattggatgcaaaaacaagacagatttcctggaaaaaccagtgca 45075374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 11405241 - 11405164
Alignment:
Q  22 gtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgat 99  Q
    ||||||||||||||||||||| |||| | || ||||| | |||||||||||  ||||||  |||  ||||||||||||    
T  11405241 gtactggtcgccctgcccttatgtatcaaatggccagacagcgcagggggcataggcatcgtaggcagcagggttgat 11405164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 45166428 - 45166388
Alignment:
Q  350 tgcactgattctgttaactggtgtgaacggtagttaactgc 390  Q
    ||||||||||||| |||||||||||| ||| ||||||||||    
T  45166428 tgcactgattctgctaactggtgtgagcggcagttaactgc 45166388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 47863914 - 47863874
Alignment:
Q  350 tgcactgattctgttaactggtgtgaacggtagttaactgc 390  Q
    ||||||| |||||||||||||||||||||| | ||||||||    
T  47863914 tgcactggttctgttaactggtgtgaacggcaattaactgc 47863874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 48164820 - 48164975
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||  |||||||||||||    
T  48164820 aggaggtgatgcggatagccggtactggtcgccctgcccttacgtatcagattgtcaggcggcgcagggggtcgaggcatgctaggcagcagggttgatt 48164919  T
Q  101 aagattaaggnnnnnnnatgtacttttttactgtgatgtataattatgacatgttcc 157  Q
    | ||||| ||       ||||||||||||||||||||| ||||||||||||||||||    
T  48164920 atgattagggtttttttatgtacttttttactgtgatg-ataattatgacatgttcc 48164975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 45034687 - 45034843
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||||| |||| | ||||||| |||||| |||||||||||| | |||||||||||||||||||||||||||||||||||  |||||||||||||    
T  45034687 aggaggtgatgcggatatccggtactgatcgccccgcccttacgtatcaaattgccaggcggcgcagggggccgaggcatgctaggcagcagggttgatt 45034786  T
Q  101 aagattaaggnnnnnnnatgtacttttttactgtgatgtataattatgacatgttcc 157  Q
    | ||||| ||       ||||||||||||||| ||||||||||||||||||||||||    
T  45034787 atgattagggtttttttatgtacttttttactctgatgtataattatgacatgttcc 45034843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 177930 - 177824
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||  | |||||||||||    
T  177930 aggaggtgatgcggatagccggtactggtcgccctgcccttacgtatcagattgccaggcggcatagggggccgaggcatgctaggcaacagggttgatt 177831  T
Q  101 aagatta 107  Q
    | |||||    
T  177830 atgatta 177824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 52561103 - 52561203
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||  || ||||||||||    
T  52561103 aggaggtgatgcggatagccggtactggtcgccctgcccttacgtaacagattgtcaggcggcgcagggggccgaggcatgctaggcagtagggttgatt 52561202  T
Q  101 a 101  Q
    |    
T  52561203 a 52561203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 18943107 - 18942949
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||| | |||||| ||||||||||||||||||||||||||| | ||||| |||||| |||||||| |||||||||||||  |||||||||||||    
T  18943107 aggaggtgatacggatagccggtactggtcgccctgcccttacgtatcaaattgcgaggcggtgcagggggtcgaggcatgctaggcagcagggttgatt 18943008  T
Q  101 aagattaagg--nnnnnnnatgtacttttttactgtgatgtataattatgacatgttcc 157  Q
    | ||||| ||         ||||||||| | |||||||| |||||||||||||||||||    
T  18943007 atgattagggtttttttttatgtactttgtgactgtgatttataattatgacatgttcc 18942949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 285 - 390
Target Start/End: Original strand, 18912112 - 18912217
Alignment:
Q  285 ttaatttccaattggatgcaaaaataggccagagttcctggaaaacctagtgcactagtggagagtgcactgattctgttaactggtgtgaacggtagtt 384  Q
    |||||||||||||||||||||||| | |||| ||||||||||||| | |||||||||||| | |||||| || |||||||||||||||||||| | ||||    
T  18912112 ttaatttccaattggatgcaaaaacatgccaaagttcctggaaaaacaagtgcactagtgcaaagtgcattggttctgttaactggtgtgaacagcagtt 18912211  T
Q  385 aactgc 390  Q
    ||||||    
T  18912212 aactgc 18912217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 18911880 - 18911963
Alignment:
Q  24 actggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgattaagatta 107  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||| | |||||||||  |||| ||||||||| |||||    
T  18911880 actggtcgccctgcccttacatatcagattgccaggcggcgcagggggccaaagcatgctaggcagcaaggttgattatgatta 18911963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 55150850 - 55150928
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggca 79  Q
    |||||||||||| |||| || ||||| |||||||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  55150850 aggaggtgatgcggataactagtactagtcgccctgcccttacttatcagattgccaggcggcgcagggggcagaggca 55150928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 263 - 329
Target Start/End: Original strand, 45034945 - 45035013
Alignment:
Q  263 cccgacatatcctagtt--ttactttaatttccaattggatgcaaaaataggccagagttcctggaaaa 329  Q
    ||||||||||||| |||  |||||||||||| |||||||||||||||| |||||| |||||||||||||    
T  45034945 cccgacatatcctggttatttactttaatttgcaattggatgcaaaaacaggccaaagttcctggaaaa 45035013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 10817 - 10893
Alignment:
Q  25 ctggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatta 101  Q
    ||||||||||||||||||| ||| |||||| ||||||||||||||||| |||||| | |||  ||||||| ||||||    
T  10817 ctggtcgccctgcccttacttatcagattgtcaggcggcgcagggggcagaggcagggtaggcagcagggctgatta 10893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 388
Target Start/End: Complemental strand, 18942844 - 18942724
Alignment:
Q  263 cccgacatatcctagtttt--actttaatttccaattggatgcaaaaataggccagagttcctggaaaacctagtgcactagtggagagtgcactgattc 360  Q
    ||||||||||||| ||| |  ||||||||||||||  ||||||||||| | |||| ||||||||||||| |       | |||| ||||||||| | |||    
T  18942844 cccgacatatccttgttattaactttaatttccaacaggatgcaaaaacaagccaaagttcctggaaaaac-------caagtgtagagtgcaccggttc 18942752  T
Q  361 tgttaactggtgtgaacggtagttaact 388  Q
    |||||| |||| ||||||||||||||||    
T  18942751 tgttaattggtatgaacggtagttaact 18942724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 54315366 - 54315312
Alignment:
Q  26 tggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcat 80  Q
    |||||||||||||||||||||| || ||||||||| |||||| |||| |||||||    
T  54315366 tggtcgccctgcccttacgtatcagtttgccaggcagcgcagagggcagaggcat 54315312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 33942636 - 33942685
Alignment:
Q  341 agtggagagtgcactgattctgttaactggtgtgaacggtagttaactgc 390  Q
    |||| ||| ||||||| |||||||||||||||||||||| ||||||||||    
T  33942636 agtgcagactgcactggttctgttaactggtgtgaacggcagttaactgc 33942685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 263 - 329
Target Start/End: Original strand, 48165080 - 48165148
Alignment:
Q  263 cccgacatatcctagtt--ttactttaatttccaattggatgcaaaaataggccagagttcctggaaaa 329  Q
    ||||||||||||| |||  |||||||||||| |||||||||||||||| | |||| |||||||| ||||    
T  48165080 cccgacatatcctggttatttactttaatttgcaattggatgcaaaaacatgccaaagttcctgaaaaa 48165148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 18911983 - 18912015
Alignment:
Q  125 tttttactgtgatgtataattatgacatgttcc 157  Q
    |||||||||||||||||||||||||||||||||    
T  18911983 tttttactgtgatgtataattatgacatgttcc 18912015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 13825533 - 13825483
Alignment:
Q  22 gtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggc 72  Q
    ||||| ||||||||||||||| ||||  ||||||||||| |||||||||||    
T  13825533 gtactagtcgccctgcccttatgtatcggattgccaggcagcgcagggggc 13825483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 177579 - 177539
Alignment:
Q  350 tgcactgattctgttaactggtgtgaacggtagttaactgc 390  Q
    ||||||||||||||||||||||||||| |  ||||||||||    
T  177579 tgcactgattctgttaactggtgtgaatgacagttaactgc 177539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 2282261 - 2282221
Alignment:
Q  350 tgcactgattctgttaactggtgtgaacggtagttaactgc 390  Q
    ||||||||||||| |||||||||||| ||| ||||||||||    
T  2282261 tgcactgattctgctaactggtgtgagcggcagttaactgc 2282221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 354 - 390
Target Start/End: Original strand, 48165151 - 48165187
Alignment:
Q  354 ctgattctgttaactggtgtgaacggtagttaactgc 390  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  48165151 ctgattctgttaactggtatgaacggcagttaactgc 48165187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 6e-42; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 31387543 - 31387698
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||||  |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  31387543 aggaggtgatgtggatagccggtactggtcgccctgcccttacgtatcagattgccaggcggcgcagggggccgaggcatgctaggcagcagggttgatt 31387642  T
Q  101 aagattaaggnnnnnnnatgtacttttttactgtgatgtataattatgacatgttcc 157  Q
      |||| |||       | ||||||||| ||||||||||||||||||||||||||||    
T  31387643 gtgatt-aggcttttttacgtactttttgactgtgatgtataattatgacatgttcc 31387698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 42463730 - 42463576
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||   ||| ||||||||    
T  42463730 aggaggtgatgcggatagccggtactggtcgccctgcccttacgtattagattgtcaggcggcgcagggagccgaggcatgctaggccgcatggttgatt 42463631  T
Q  101 aagattaaggnnnnnnnatgtacttttttactgtgatgtataattatgacatgtt 155  Q
      ||||| |        ||||||||||| ||||||||||||||||||||||||||    
T  42463630 gcgattaggctttttttatgtactttttcactgtgatgtataattatgacatgtt 42463576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 4912043 - 4911887
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||||| | |||| |||| |||||||||||||||||  ||| |||||||||||||||||||||||| ||||||| ||||  |||| ||||||||    
T  4912043 aggaggtgatgcgggtagccggtattggtcgccctgcccttatatatcagattgccaggcggcgcagggggctgaggcatactaggcagcatggttgatt 4911944  T
Q  101 aagattaaggnnnnnnnatgtacttttttactgtgatgtataattatgacatgttcc 157  Q
      ||||| |        ||||||||||| | ||||||||||||||||||||||||||    
T  4911943 gtgattaggctttttttatgtactttttgattgtgatgtataattatgacatgttcc 4911887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 27106133 - 27106034
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||||| |||||| |||||||||||||||||||||| |||| |||||| ||||||||| ||||||||||||||||||||  |||| ||||||||    
T  27106133 aggaggtgatgcggatagccggtactggtcgccctgcccttatgtatcagattgtcaggcggcgtagggggccgaggcatgctaggcagcatggttgatt 27106034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 15291696 - 15291590
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||| | |||||| |||| |||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||  || | ||||||||    
T  15291696 aggaggtgatacggatagccggtattggtcgtcctgcccttacgtatcagattgccaggcggcgcagagggccgaggcatgctaggcagtaaggttgatt 15291597  T
Q  101 aagatta 107  Q
    | |||||    
T  15291596 atgatta 15291590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 18242968 - 18243068
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||| |||||| || ||||| |||||||||||||||| ||| |||||||||||||||||||||||| |||||| | |||  ||||||| |||||    
T  18242968 aggaggtgatacagatatctagtactagtcgccctgcccttacttatcagattgccaggcggcgcagggggcagaggcagggtaggcagcagggctgatt 18243067  T
Q  101 a 101  Q
    |    
T  18243068 a 18243068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 2 - 157
Target Start/End: Complemental strand, 46192399 - 46192244
Alignment:
Q  2 ggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatta 101  Q
    ||||||||||| |||| | |||||| |||||||| |||||| |||| |||||| |||||| || ||||||||||||||| ||||  |||| | |||||||    
T  46192399 ggaggtgatgcggataaccggtactagtcgccctccccttatgtatcagattgtcaggcgacgtagggggccgaggcattctaggcagcacgtttgatta 46192300  T
Q  102 agattaaggnnnnnnnatgtacttttttactgtgatgtataattatgacatgttcc 157  Q
     |||||          ||||| ||||| ||||||||||||||||||||||||||||    
T  46192299 tgattagactttttttatgtaatttttgactgtgatgtataattatgacatgttcc 46192244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 42055857 - 42055805
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagatt 53  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||| |||||    
T  42055857 aggaggtgatgcggatagccggtactggtcgccctgcccttacgtatcagatt 42055805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 50914893 - 50914962
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggg 70  Q
    |||||||||||| ||||||| ||||| | |||||||||||||| ||| | |||| |||||||||||||||    
T  50914893 aggaggtgatgcggatagctagtactagccgccctgcccttacttatcaaattgtcaggcggcgcagggg 50914962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 28865799 - 28865848
Alignment:
Q  341 agtggagagtgcactgattctgttaactggtgtgaacggtagttaactgc 390  Q
    |||| ||| ||||||| |||||||||||||||||||||| ||||||||||    
T  28865799 agtgcagactgcactggttctgttaactggtgtgaacggcagttaactgc 28865848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 4911783 - 4911733
Alignment:
Q  263 cccgacatatcctagtt--ttactttaatttccaattggatgcaaaaatag 311  Q
    ||||||||||||| |||  |||||||||||| |||||||||||||||||||    
T  4911783 cccgacatatcctggttgtttactttaatttgcaattggatgcaaaaatag 4911733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 338 - 390
Target Start/End: Original strand, 7407366 - 7407418
Alignment:
Q  338 actagtggagagtgcactgattctgttaactggtgtgaacggtagttaactgc 390  Q
    ||||||| ||| ||||||| ||||||||||||||||||||   ||||||||||    
T  7407366 actagtgcagactgcactggttctgttaactggtgtgaacaacagttaactgc 7407418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 36354708 - 36354668
Alignment:
Q  350 tgcactgattctgttaactggtgtgaacggtagttaactgc 390  Q
    ||||||| |||||||||||||||||||||  ||||||||||    
T  36354708 tgcactggttctgttaactggtgtgaacgacagttaactgc 36354668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 350 - 386
Target Start/End: Original strand, 45475444 - 45475480
Alignment:
Q  350 tgcactgattctgttaactggtgtgaacggtagttaa 386  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  45475444 tgcactgattctgttaactggtgtgagcggcagttaa 45475480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 10825822 - 10825665
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  || ||||||||||    
T  10825822 aggaggtgatgcggatagccggtactggtcgccctgcccttacgtatcagattgccaggcggcgcagggggccgaggcatgctaggcagtagggttgatt 10825723  T
Q  101 aagattaag-gnnnnnnnatgtacttttttactgtgatgtataattatgacatgttcc 157  Q
      ||||| |         ||||||||||| ||||||||||||||||||||||||||||    
T  10825722 gtgattaggcttttttttatgtactttttgactgtgatgtataattatgacatgttcc 10825665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 7262950 - 7263051
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgca-gggggccgaggcatgctagttagcagggttgat 99  Q
    |||||||||||| |||||| ||||||||||||||| ||||||||||| ||||| |||||||||||| |||||||||||||||||||  ||||||||||||    
T  7262950 aggaggtgatgcggatagccggtactggtcgcccttcccttacgtatcagattaccaggcggcgcaggggggccgaggcatgctaggcagcagggttgat 7263049  T
Q  100 ta 101  Q
    ||    
T  7263050 ta 7263051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 23067192 - 23067276
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctag 85  Q
    |||||||||||  |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||    
T  23067192 aggaggtgatggggatagccggtactggtcgccctgcccttacgtatcagattaccaggcggcgcagggggccgaggcaagctag 23067276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 19876595 - 19876678
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgcta 84  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||| |||||| ||| ||||||||||||    
T  19876595 aggaggtgatgcggatagccggtactggtcgccctgcccttacgtatcagattgccaggcagcgcagaggggcgaggcatgcta 19876678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 37980366 - 37980269
Alignment:
Q  3 gaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatta 101  Q
    |||||||||| |||||| | |||| |||||||||||||||| ||| |||||||||||||||| ||||| | |||||| | |||  ||||||| ||||||    
T  37980366 gaggtgatgctgatagcag-tactagtcgccctgcccttacttatcagattgccaggcggcgtaggggtcagaggcagggtagacagcagggctgatta 37980269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 6556629 - 6556678
Alignment:
Q  341 agtggagagtgcactgattctgttaactggtgtgaacggtagttaactgc 390  Q
    |||| ||| ||||||| |||||||||||||||||||||| ||||||||||    
T  6556629 agtgcagactgcactggttctgttaactggtgtgaacggcagttaactgc 6556678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 26752108 - 26752157
Alignment:
Q  341 agtggagagtgcactgattctgttaactggtgtgaacggtagttaactgc 390  Q
    |||| ||| ||||||| |||||||||||||||||| ||||||||||||||    
T  26752108 agtgcagactgcactggttctgttaactggtgtgagcggtagttaactgc 26752157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 24169559 - 24169627
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcaggg 69  Q
    |||||||||||| ||||||| ||||| ||||  |||||||||  ||| |||||| ||||||||||||||    
T  24169559 aggaggtgatgcggatagctagtactagtcgtactgcccttaattatcagattgtcaggcggcgcaggg 24169627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 7263218 - 7263268
Alignment:
Q  279 tttactttaatttccaattggatgcaaaaataggccagagttcctggaaaa 329  Q
    ||||||||||||| |||||||||||||||| ||| || | |||||||||||    
T  7263218 tttactttaatttgcaattggatgcaaaaacaggacaaatttcctggaaaa 7263268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 3 - 157
Target Start/End: Original strand, 41269876 - 41270032
Alignment:
Q  3 gaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgattaa 102  Q
    |||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||  ||||||||||||||     
T  41269876 gaggtgatgcggatagccggtactggtcgccctgcccttacgtatcagattgccaggcggcgcagggggccaaggcatgctaggcagcagggttgattat 41269975  T
Q  103 gattaagg-nnnnnnnatgtac-ttttttactgtgatgtataattatgacatgttcc 157  Q
    ||||| ||        || ||| ||||||||||||||||||||||||||||||||||    
T  41269976 gattagggttttttttatttactttttttactgtgatgtataattatgacatgttcc 41270032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 42095874 - 42095768
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||||| |||||  |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||| |||| |||    
T  42095874 aggaggtgatgcggatagtcggtattggtcgccctgcccttacgtatcagattgccaggcggcgcagggggccgaggcatgctaggcagcaaggttcatt 42095775  T
Q  101 aagatta 107  Q
    | |||||    
T  42095774 atgatta 42095768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 44116027 - 44115870
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||||| |||||| ||||| ||||||||||||||||||||| ||||||| ||| |||||||||||| || |||||||||  || ||||||||||    
T  44116027 aggaggtgatgcggatagccggtaccggtcgccctgcccttacgtatcagattgctaggtggcgcagggggctgatgcatgctaggcagtagggttgatt 44115928  T
Q  101 aagattaag-gnnnnnnnatgtacttttttactgtgatgtataattatgacatgttcc 157  Q
      ||||| |         ||||||||||| ||||||||||||||||||||||||||||    
T  44115927 gtgattaggcttttttttatgtactttttgactgtgatgtataattatgacatgttcc 44115870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 8317149 - 8317050
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||||| |||||||  |||| |||||||||||||||| ||| |||||||||||||||||| | ||| ||| |||||||| ||||||||||||||    
T  8317149 aggaggtgatgcggatagctactactagtcgccctgcccttacttatcagattgccaggcggcgcatgaggcagagacatgctaggtagcagggttgatt 8317050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 20477726 - 20477648
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggca 79  Q
    |||||||||||| ||||||| ||||| |||||||||||||||| ||| | ||||| |||||||||||||||| ||||||    
T  20477726 aggaggtgatgcggatagctagtactagtcgccctgcccttacttatcatattgcgaggcggcgcagggggcagaggca 20477648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 338 - 390
Target Start/End: Original strand, 17443241 - 17443293
Alignment:
Q  338 actagtggagagtgcactgattctgttaactggtgtgaacggtagttaactgc 390  Q
    ||||||| ||| |||||||||||||||||||||||||||||| ||||||||||    
T  17443241 actagtgcagactgcactgattctgttaactggtgtgaacggcagttaactgc 17443293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 18701257 - 18701199
Alignment:
Q  22 gtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcat 80  Q
    |||| ||||||||||||||||||||| ||||||||||||  |||||||||| |||||||    
T  18701257 gtaccggtcgccctgcccttacgtatcagattgccaggcatcgcagggggcagaggcat 18701199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 279 - 390
Target Start/End: Original strand, 41270157 - 41270260
Alignment:
Q  279 tttactttaatttccaattggatgcaaaaataggccagagttcctggaaaacctagtgcactagtggagagtgcactgattctgttaactggtgtgaacg 378  Q
    ||||||||||||| |||||| ||||||||| |||||| |||||||||||||        || |||| ||||||||||| || |||||||| |||||||||    
T  41270157 tttactttaattttcaattgtatgcaaaaacaggccaaagttcctggaaaa--------accagtgcagagtgcactggttttgttaactagtgtgaacg 41270248  T
Q  379 gtagttaactgc 390  Q
    | | ||||||||    
T  41270249 gcaattaactgc 41270260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 26702788 - 26702837
Alignment:
Q  341 agtggagagtgcactgattctgttaactggtgtgaacggtagttaactgc 390  Q
    |||| ||| ||||||| |||||||||||||||||||||| ||||||||||    
T  26702788 agtgcagactgcactggttctgttaactggtgtgaacggcagttaactgc 26702837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 44322926 - 44322975
Alignment:
Q  341 agtggagagtgcactgattctgttaactggtgtgaacggtagttaactgc 390  Q
    |||| ||| ||||||||||||||||||||||| || ||||||||||||||    
T  44322926 agtgcagactgcactgattctgttaactggtgggagcggtagttaactgc 44322975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 45120633 - 45120682
Alignment:
Q  341 agtggagagtgcactgattctgttaactggtgtgaacggtagttaactgc 390  Q
    |||| ||| ||||||| ||||||| |||||||||||||| ||||||||||    
T  45120633 agtgcagattgcactggttctgtttactggtgtgaacggcagttaactgc 45120682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 71; Significance: 8e-32; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 3074 - 2968
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||||| |||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||  | |||||||||||    
T  3074 aggaggtgatgcggatatccggtactggtcgccctgcccttacgtatcagattgccaggcggcgcagggggccgaggcgtgctaggcaacagggttgatt 2975  T
Q  101 aagatta 107  Q
    | |||||    
T  2974 atgatta 2968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 8e-32; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 5620333 - 5620486
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||||| |||||| | |||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||  |||||||||||||    
T  5620333 aggaggtgatgcggatagccgatactagtcgccctgcccttacgtatcagattgccaggcggcgcagggagccgaggcatgctaggcagcagggttgatt 5620432  T
Q  101 aagattaaggnnnnnnn---atgtacttttttactgtgatgtataattatgaca 151  Q
    | ||||| |           ||||||||||||||| ||||||||||||||||||    
T  5620433 atgattaggcttttttttttatgtacttttttactatgatgtataattatgaca 5620486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 3 - 100
Target Start/End: Complemental strand, 19268860 - 19268763
Alignment:
Q  3 gaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||| ||||||||  |||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||| |||  |||||||||||||    
T  19268860 gaggtgattcagatagccagtactggtcgccctgcccatacgtatcagattgccaggcggcgcagggggcagaggcatggtaggcagcagggttgatt 19268763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 33523450 - 33523556
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||| |  |||||  ||||||| |||||||||||||| ||| ||||||| |||||||||||||||| | |||| | |||  || ||||||||||    
T  33523450 aggaggtgatacgaatagccagtactggccgccctgcccttacatatcagattgctaggcggcgcagggggcagcggcagggtagacagtagggttgatt 33523549  T
Q  101 aagatta 107  Q
    | |||||    
T  33523550 atgatta 33523556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 390
Target Start/End: Original strand, 31860625 - 31860665
Alignment:
Q  350 tgcactgattctgttaactggtgtgaacggtagttaactgc 390  Q
    ||||||| |||||||||||||||||||||| ||||||||||    
T  31860625 tgcactggttctgttaactggtgtgaacggcagttaactgc 31860665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 338
Target Start/End: Original strand, 2946413 - 2946472
Alignment:
Q  279 tttactttaatttccaattggatgcaaaaataggccagagttcctggaaaacctagtgca 338  Q
    ||||||||||||| ||||||||||||||| |||| || | ||||||||||| | ||||||    
T  2946413 tttactttaatttgcaattggatgcaaaattaggacaaatttcctggaaaaaccagtgca 2946472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 350 - 390
Target Start/End: Original strand, 32264111 - 32264151
Alignment:
Q  350 tgcactgattctgttaactggtgtgaacggtagttaactgc 390  Q
    ||||||| ||||||| |||||||||||||| ||||||||||    
T  32264111 tgcactggttctgtttactggtgtgaacggcagttaactgc 32264151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 5e-27; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 19508526 - 19508683
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||||| |||||| ||||||||||||  || |||||||||| ||||||||||||||| ||||||||| |||||||||||  ||||| |||||||    
T  19508526 aggaggtgatgcggatagccggtactggtcgca-tgtccttacgtatcagattgccaggcggcacagggggccaaggcatgctaggcagcagtgttgatt 19508624  T
Q  101 aagattaagg--nnnnnnnatgtacttttttactgtgatgtataattatgacatgttcc 157  Q
    | ||||| ||         ||||||||||  ||||||||||||||||||||||||||||    
T  19508625 atgattagggtttttttttatgtacttttggactgtgatgtataattatgacatgttcc 19508683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 26393765 - 26393933
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||||  ||||||  |||||||| ||||||||||||||||| ||||| || |||| |||||||||||||||||||||||| |||||||||||||    
T  26393765 aggaggtgatgtggatagccagtactggttgccctgcccttacgtatcagattacccggcgacgcagggggccgaggcatgctagtcagcagggttgatt 26393864  T
Q  101 aagattaaggnnnnnnnatgtacttttttact--------gtgatgtataattatgacatgttccatac 161  Q
    | ||||| |        ||||||||||| |||        |||||||||||||||||||||||||||||    
T  26393865 atgattaggctttttatatgtactttttgacttgatcatggtgatgtataattatgacatgttccatac 26393933  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 31501244 - 31501145
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||||  |||||| ||||||||||||| ||||||||||||| |||||  |||||| |||||||||||||||||||||||  |||||||||||||    
T  31501244 aggaggtgatgtggatagccggtactggtcgccttgcccttacgtatcagattttcaggcgacgcagggggccgaggcatgctaggcagcagggttgatt 31501145  T

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Target: chr2; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 40612959 - 40612853
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||||| ||| || ||||||| ||||||||||| ||||||| |||||| |||| |||||||||||| |||||||| |||  |||||||||||||    
T  40612959 aggaggtgatgcggatggccggtactgatcgccctgcccgtacgtatcagattgtcaggtggcgcagggggcagaggcatggtaggcagcagggttgatt 40612860  T
Q  101 aagatta 107  Q
    | |||||    
T  40612859 atgatta 40612853  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 4174790 - 4174890
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||||| |||||| |||||||||||||||||| |||||||| ||||||||| ||||||| | ||| ||||| |||||||  || ||||||||||    
T  4174790 aggaggtgatgcggatagccggtactggtcgccctgccgttacgtatcagattgccaagcggcgctgtgggtcgaggtatgctaggcagtagggttgatt 4174889  T
Q  101 a 101  Q
    |    
T  4174890 a 4174890  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 34458529 - 34458600
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggc 72  Q
    |||||||||| |||||||| ||||| |||| |||||||||||| ||| ||||||||||||||||||||||||    
T  34458529 aggaggtgatacagatagcaggtaccggtctccctgcccttacatatcagattgccaggcggcgcagggggc 34458600  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 2777161 - 2777239
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggca 79  Q
    |||||||||||| ||||||| ||||| || ||||| ||||||| ||| ||||| |||||||||||||||||| ||||||    
T  2777161 aggaggtgatgcggatagctagtactagtggccctccccttacttatcagatttccaggcggcgcagggggcagaggca 2777239  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 2119960 - 2119882
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggca 79  Q
    |||||||||||| ||||||| ||||| |||||  ||||||||| ||| |||||  ||||||||||||||||| ||||||    
T  2119960 aggaggtgatgcggatagctagtactagtcgcgttgcccttacttatcagattttcaggcggcgcagggggcagaggca 2119882  T

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Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 15738302 - 15738244
Alignment:
Q  22 gtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcat 80  Q
    |||| ||||||||||||||||||||| ||||||||||||  |||||||||| |||||||    
T  15738302 gtaccggtcgccctgcccttacgtatcagattgccaggcatcgcagggggcagaggcat 15738244  T

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Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 26172745 - 26172783
Alignment:
Q  22 gtactggtcgccctgcccttacgtattagattgccaggc 60  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26172745 gtactggtcgccctgcccttacgtattagattgccaggc 26172783  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 13331797 - 13331846
Alignment:
Q  341 agtggagagtgcactgattctgttaactggtgtgaacggtagttaactgc 390  Q
    |||| ||| ||||||| |||||||||||||||||||||| ||||||||||    
T  13331797 agtgcagactgcactggttctgttaactggtgtgaacggcagttaactgc 13331846  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 29902286 - 29902363
Alignment:
Q  23 tactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    ||||||||||||||||||||| |||| |||| |||||| ||| ||||||| ||| |||  |||  |||||||||||||    
T  29902286 tactggtcgccctgcccttacatattggatttccaggcagcgtagggggcagagacatcgtaggcagcagggttgatt 29902363  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 338
Target Start/End: Original strand, 26394031 - 26394090
Alignment:
Q  279 tttactttaatttccaattggatgcaaaaataggccagagttcctggaaaacctagtgca 338  Q
    ||||||||||||| |||||||||||||||| ||| || | ||||||||||| | ||||||    
T  26394031 tttactttaatttgcaattggatgcaaaaagaggacaaatttcctggaaaaaccagtgca 26394090  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 157
Target Start/End: Complemental strand, 31501122 - 31501083
Alignment:
Q  118 atgtacttttttactgtgatgtataattatgacatgttcc 157  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  31501122 atgtactttttgactatgatgtataattatgacatgttcc 31501083  T

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Target: scaffold0688 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 5443 - 5543
Alignment:
Q  1 aggaggtgatgcagatagctggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctagttagcagggttgatt 100  Q
    |||||||||||| ||||||| ||||| |||||||||||||||| ||||||||||| |||||||||||||||| |||||| | |||  ||||||| |||||    
T  5443 aggaggtgatgcggatagctagtactagtcgccctgcccttacttattagattgctaggcggcgcagggggcagaggcaaggtaggcagcagggctgatt 5542  T
Q  101 a 101  Q
    |    
T  5543 a 5543  T

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Target: scaffold0006 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 19132 - 19092
Alignment:
Q  350 tgcactgattctgttaactggtgtgaacggtagttaactgc 390  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  19132 tgcactgattctgttaactggtgtgagcggcagttaactgc 19092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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