View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2886_low_3 (Length: 250)
Name: NF2886_low_3
Description: NF2886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2886_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 28676893 - 28677102
Alignment:
| Q |
16 |
ataataccttttatttcattttggttgttacttttctgcattttttatacttaatgttcttgttcttgcatttttacaatgtttgtccattcccacatat |
115 |
Q |
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| T |
28676893 |
ataataccttttatttcattttggttgttacatttctgcattttttatacttaatgttcttgttcttgcatttttacaatgtttgtccattcccacgtat |
28676992 |
T |
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| Q |
116 |
ttctcgcactacaagcaaagacttgagacagtaaacttatcaacttagaacccccaaccatgttctaacttgagtcttagattaatcatcaagttcatgt |
215 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||| | |
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| T |
28676993 |
ttctcgcactacaaacaaagacttaagacagtaaacttatcaacttagaacccccaaccatgatctaactcgagtcctagattaatcatcaagttcattt |
28677092 |
T |
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| Q |
216 |
gttgaagata |
225 |
Q |
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||||||||| |
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| T |
28677093 |
attgaagata |
28677102 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 33819906 - 33819862
Alignment:
| Q |
39 |
gttgttacttttctgcattttttatacttaatgttcttgttcttg |
83 |
Q |
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||||||| |||||| ||||||||| |||||||||||||||||||| |
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| T |
33819906 |
gttgttaattttctccattttttaaacttaatgttcttgttcttg |
33819862 |
T |
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