View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2886_low_6 (Length: 209)
Name: NF2886_low_6
Description: NF2886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2886_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 39529600 - 39529414
Alignment:
| Q |
14 |
tggtgggtaaagggaggtgtggtataaggtattgagggtgaaatgtggtcagaaggggggcacttgaaggagggggtagggatagttttgtttggtggaa |
113 |
Q |
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| T |
39529600 |
tggtggataaagggaggtgtggtataaggtattgagggtgaaatatggtcagaaggggggcacttgaaggagggggtagggatagttttatttggtggaa |
39529501 |
T |
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| Q |
114 |
ggagttgatgtggatcagtaatgatattgggttctgggagggaagttggtttgaacggaaattaaggagggtggtgggtgatgatgt |
200 |
Q |
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| T |
39529500 |
ggagttgatgtggatcagtaatgatattgggttctgggagggaaattggtttgaacgaaaattaaagagggtggtgggtgatgatgt |
39529414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 48587709 - 48587532
Alignment:
| Q |
21 |
taaagggaggtgtggtataaggtattgagggtgaaatgtggtcagaagggg-ggcacttgaaggag-ggggtagggatagttttgtttggtggaaggagt |
118 |
Q |
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| T |
48587709 |
taaagggggttgtggtatacggtgttgatggtgaaatatggtgaggagtgatggcgctcgaaggagaggggtagagatgagtttgtttggtggaaggagt |
48587610 |
T |
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| Q |
119 |
tgatgtggatcagtaatgatattgggttctgggagggaagttggtttgaacggaaattaaggagggtggtgggtgatg |
196 |
Q |
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| T |
48587609 |
tggtgtggatctgtaatgacattgggttcggagaaggaagttgatttgaagagaatttaagaaaggtggtgggtgatg |
48587532 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 196
Target Start/End: Complemental strand, 10167747 - 10167623
Alignment:
| Q |
73 |
gcacttgaaggaggg-ggtagggatagttttgtttggtggaaggagttgatgtggatcagtaatgatattgggttctgggagggaagttggtttgaacgg |
171 |
Q |
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| T |
10167747 |
gcacttgaaggaaggaggtagagatgattatgtttggtggaaggagttggcgtggactcgtaatggtattgagttcggagattgaagttagtttgaagag |
10167648 |
T |
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| Q |
172 |
aaattaaggagggtggtgggtgatg |
196 |
Q |
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| T |
10167647 |
aatttaaggagggtggtgggtgatg |
10167623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 46632614 - 46632540
Alignment:
| Q |
45 |
ttgagggtgaaatgtggtcagaaggggggcacttgaaggagggggtagggatagttttgtttggtggaaggagttg |
120 |
Q |
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| T |
46632614 |
ttgagggtgaaatatggtgaggaggggg-cgcttgaaggagggggtagagatgggtctgtgtggtggaaggagttg |
46632540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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