View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2887-Insertion-10 (Length: 414)
Name: NF2887-Insertion-10
Description: NF2887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2887-Insertion-10 |
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| [»] scaffold0043 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 8 - 340
Target Start/End: Complemental strand, 49290345 - 49290004
Alignment:
| Q |
8 |
acttggagctattgtattgcccatatggagttgagaacacttttaagagcccttttgtccgtgattactcactaacaacgtttgagaagacactgaagaa |
107 |
Q |
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| T |
49290345 |
acttggagctattgtattgcccatatggagttgagaacacttttaagagcccttttgtccgtgattactcactaacaacgtttgagaagacactgaagaa |
49290246 |
T |
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| Q |
108 |
tggagctagtgatggagaggaagaagataactcaatatcatcatcatca---------cggaggaaaagcaacgtgattgtaagaggagttctatcggtc |
198 |
Q |
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| T |
49290245 |
tggagctagtgatggagaggaagaagataactcaatatcatcatcatcatcatcatcacggaggaaaagcaacgtgattgtaagaggagttctatcggtc |
49290146 |
T |
|
| Q |
199 |
actgtaatttcagctgaagacttaccaatagtagattttatgggcaaggctgacccatttgttgtccttgcattgagaaaatcagaaaagaaacaaaaga |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
49290145 |
actgtaatttcagctgaagacttaccaatagtagattttatgggcaaggctgacccatttgttgtccttgcattgaaaaaatcagaaaagaaacaaaaga |
49290046 |
T |
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| Q |
299 |
cccgagtaagtaagacttatgatgttattgggtttttaaata |
340 |
Q |
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| T |
49290045 |
cccgagtaagtaagacttatgatgttattgggtttttaaata |
49290004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 402
Target Start/End: Complemental strand, 38231455 - 38231423
Alignment:
| Q |
370 |
atacacctcttatgtacaccccatgtgttaggg |
402 |
Q |
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| T |
38231455 |
atacacctcttatgtacaccccatgtgtcaggg |
38231423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 370 - 402
Target Start/End: Complemental strand, 44275869 - 44275837
Alignment:
| Q |
370 |
atacacctcttatgtacaccccatgtgttaggg |
402 |
Q |
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| T |
44275869 |
atacacctcttatgtacaccccatgtgttaggg |
44275837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 370 - 402
Target Start/End: Original strand, 3830925 - 3830957
Alignment:
| Q |
370 |
atacacctcttatgtacaccccatgtgttaggg |
402 |
Q |
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| T |
3830925 |
atacacctcttatgtacaccccatgtgttaggg |
3830957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 370 - 402
Target Start/End: Complemental strand, 16089984 - 16089952
Alignment:
| Q |
370 |
atacacctcttatgtacaccccatgtgttaggg |
402 |
Q |
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| T |
16089984 |
atacacctcttatgtacaccccatgtgttaggg |
16089952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 370 - 414
Target Start/End: Original strand, 37914265 - 37914309
Alignment:
| Q |
370 |
atacacctcttatgtacaccccatgtgttagggtattttaatcat |
414 |
Q |
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| T |
37914265 |
atacacctcttatgtacaccccatgtaccagggtattttaatcat |
37914309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 414
Target Start/End: Complemental strand, 36315724 - 36315679
Alignment:
| Q |
370 |
atacacctcttatgtacaccccatgtgtta-gggtattttaatcat |
414 |
Q |
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| T |
36315724 |
atacacctcttatgtacacctcatgtgtcaggggtattttaatcat |
36315679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 402
Target Start/End: Original strand, 87190 - 87222
Alignment:
| Q |
370 |
atacacctcttatgtacaccccatgtgttaggg |
402 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
87190 |
atacaccttttatgtacaccccatgtgttaggg |
87222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 409
Target Start/End: Original strand, 27553401 - 27553441
Alignment:
| Q |
370 |
atacacctcttatgtacaccccatgtgttagg-gtatttta |
409 |
Q |
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| T |
27553401 |
atacacctcttatgtacaccctatgtgttaggagtatttta |
27553441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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