View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2887-Insertion-12 (Length: 170)
Name: NF2887-Insertion-12
Description: NF2887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2887-Insertion-12 |
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| [»] chr2 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 6e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 6e-85
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 8880809 - 8880971
Alignment:
| Q |
8 |
catcatcatcatttgcagtagcccgaacatacaccacccgcctcaaaccatcggccaccaaaatcgattttctggcatttttactctgaaaaccgaatgt |
107 |
Q |
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| T |
8880809 |
catcatcatcatttgcagtagcccgaacatacaccacccgcctcaaaccatcggccaccaaaatcgattttctggcatttttactctgtaaaccgaatgt |
8880908 |
T |
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| Q |
108 |
gatggtcgatggagtaattgaaggtgtggagttgagagaggttactggaagtgtgtttatgtg |
170 |
Q |
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| T |
8880909 |
gatggtcgatggagtaattgaaggtgtggagttgagagaggttactggaagtgtgtttatgtg |
8880971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 26 - 165
Target Start/End: Original strand, 8884932 - 8885071
Alignment:
| Q |
26 |
tagcccgaacatacaccacccgcctcaaaccatcggccaccaaaatcgattttctggcatttttactctgaaaaccgaatgtgatggtcgatggagtaat |
125 |
Q |
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| T |
8884932 |
tagcctgaacatacaccacccgcctcaaaccatcggccaacacaatcggttttctgacatgtttgttcagaaaaccgactgtgatggtcgacggagaaat |
8885031 |
T |
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| Q |
126 |
tgaaggtgtggagttgagagaggttactggaagtgtgttt |
165 |
Q |
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| T |
8885032 |
tgaaggtgtggagttgagagaggttactggaagagtgttt |
8885071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 2e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 32 - 170
Target Start/End: Original strand, 45073963 - 45074101
Alignment:
| Q |
32 |
gaacatacaccacccgcctcaaaccatcggccaccaaaatcgattttctggcatttttactctgaaaaccgaatgtgatggtcgatggagtaattgaagg |
131 |
Q |
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| T |
45073963 |
gaacatacgccatccgcctaaaaccatcggccaacacaatcggtcttctggcatgtttgctcagaaaaccgaatgtgatggtcaatggagaaattgaagg |
45074062 |
T |
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| Q |
132 |
tgtggagttgagagaggttactggaagtgtgtttatgtg |
170 |
Q |
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| T |
45074063 |
tgtggagttgagagaggttactggaagtgtgtttatgtg |
45074101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 6e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 82 - 170
Target Start/End: Original strand, 4341702 - 4341790
Alignment:
| Q |
82 |
gcatttttactctgaaaaccgaatgtgatggtcgatggagtaattgaaggtgtggagttgagagaggttactggaagtgtgtttatgtg |
170 |
Q |
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| T |
4341702 |
gcatgtttgctcagaaaatcgactctgatggtcggtggagaaattgaagttgtggagttgagagaggttactggaagggtgtttgtgtg |
4341790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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