View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2887-Insertion-2 (Length: 1078)

Name: NF2887-Insertion-2
Description: NF2887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2887-Insertion-2
NF2887-Insertion-2
[»] chr7 (8 HSPs)
chr7 (20-633)||(48100786-48101402)
chr7 (697-1026)||(48101466-48101803)
chr7 (20-261)||(33611079-33611320)
chr7 (75-261)||(27810328-27810514)
chr7 (774-833)||(48074729-48074788)
chr7 (23-116)||(15633227-15633320)
chr7 (774-834)||(1808059-1808119)
chr7 (20-116)||(13015009-13015105)
[»] chr1 (11 HSPs)
chr1 (20-261)||(4614743-4614984)
chr1 (20-167)||(13288034-13288181)
chr1 (20-251)||(24065076-24065307)
chr1 (20-115)||(34696149-34696244)
chr1 (756-833)||(35377880-35377957)
chr1 (753-833)||(35358962-35359042)
chr1 (259-304)||(4614677-4614722)
chr1 (31-116)||(41117187-41117272)
chr1 (753-833)||(35372231-35372311)
chr1 (20-114)||(40490060-40490154)
chr1 (770-831)||(29768827-29768888)
[»] chr3 (3 HSPs)
chr3 (20-261)||(49499263-49499504)
chr3 (264-359)||(49499142-49499237)
chr3 (20-116)||(16739476-16739572)
[»] chr4 (9 HSPs)
chr4 (20-249)||(37061095-37061324)
chr4 (20-249)||(13685873-13686102)
chr4 (780-833)||(6342778-6342831)
chr4 (53-114)||(26949227-26949288)
chr4 (74-117)||(12355221-12355264)
chr4 (74-117)||(27066640-27066683)
chr4 (74-117)||(27066834-27066877)
chr4 (74-117)||(27087547-27087590)
chr4 (20-114)||(16431401-16431495)
[»] chr5 (10 HSPs)
chr5 (92-251)||(23622383-23622542)
chr5 (264-365)||(29955757-29955858)
chr5 (20-187)||(29955510-29955674)
chr5 (53-257)||(19237523-19237727)
chr5 (264-362)||(23622249-23622347)
chr5 (20-116)||(2157823-2157919)
chr5 (20-75)||(23622542-23622597)
chr5 (74-117)||(29755053-29755096)
chr5 (56-114)||(6783313-6783371)
chr5 (70-115)||(40299901-40299946)
[»] chr2 (9 HSPs)
chr2 (20-261)||(33650723-33650971)
chr2 (20-117)||(11818489-11818586)
chr2 (264-357)||(33650606-33650697)
chr2 (21-114)||(27267935-27268028)
chr2 (20-115)||(36641358-36641453)
chr2 (31-117)||(11553324-11553410)
chr2 (52-114)||(44886295-44886357)
chr2 (70-115)||(14995196-14995241)
chr2 (74-115)||(17826750-17826791)
[»] chr8 (3 HSPs)
chr8 (20-257)||(2246767-2247004)
chr8 (20-109)||(953675-953764)
chr8 (20-115)||(42080463-42080558)
[»] chr6 (5 HSPs)
chr6 (23-257)||(23508899-23509133)
chr6 (725-831)||(7387508-7387614)
chr6 (53-117)||(16416598-16416662)
chr6 (74-117)||(30141038-30141081)
chr6 (20-114)||(34355790-34355884)
[»] scaffold0019 (1 HSPs)
scaffold0019 (23-115)||(73387-73479)


Alignment Details
Target: chr7 (Bit Score: 500; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 20 - 633
Target Start/End: Original strand, 48100786 - 48101402
Alignment:
Q  20 aaataaacaacgggactaactagaaacatggattctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagttggtnn 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||      
T  48100786 aaataaacaacgggactaactagaaacgtggattctcctgcaagcacatgagcaaccacatttgcttgtcgcctagcaaactccaccctagagttggtaa 48100885  T
Q  120 nnnnngagttgaatagagatcgacaagaagaaataacgcacccaaattcagaaatgtcttcttgagtagaatgaaaagcgtcatgggtaatcttggaatc 219  Q
         ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48100886 aaaaagagctgaatagagatcgacaagaagaaataacgcatccaaattcagaaatgtcttcttgagtagaatgaaaagcgtcatgggtaatcttggaatc 48100985  T
Q  220 gggttcaaaatcaacattgtcaaattgcatattacttaaccaaagcttcaccaacatcaaccgaataaatacatggaaaactgacgatctttgccaagac 319  Q
    || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  48100986 ggtttcaaaatcaacattgtcaaattgcatatcacttaaccaaagcttcaccaacatcaaccgaataaatacatggaaaactgacgacctttgccaagac 48101085  T
Q  320 aaacgtaccatcagaatcccaaatacaaatgccaattccagtttgggaatttgtcaatcccgaacacttnnnnnnncgtggagggtatttgtcaattttt 419  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||       ||| ||||||||||||||||||||    
T  48101086 aaacgtaccatcagaatcccgaatacaaatgccaattccagttcgggaatttgtcaatcccaaacacttaaaaaaacgtagagggtatttgtcaattttt 48101185  T
Q  420 caacactarttccttttttgaattccatcaaccacatgtccaaaacaagtatgaaatatatatgcgattatttcatttgacatgtaaatgctcactaatc 519  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  48101186 caacactacttccttttttgaattccatcaaccacatgtccaaaacaagtatgaaatatatatgcgattatttcatttgacatgtaaatggtcactaatc 48101285  T
Q  520 aatcaaatatcaaacacactagtaaaaa--attaaactagctatgaaaagttataaacgaaaataaatacatctctaatttgacatgtaaa-tgctagag 616  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  48101286 aatcaaatatcaaacacactagtaaaaaatattaaactagctatgaaaagttataaacgaaaataaatacatctctaatttgacatgtaaattgctagag 48101385  T
Q  617 acacaaactagagacca 633  Q
    |||||||||||||||||    
T  48101386 acacaaactagagacca 48101402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 697 - 1026
Target Start/End: Original strand, 48101466 - 48101803
Alignment:
Q  697 caggccaaaaacttggtattgagtcggtattgccatacttgagtccacgactaagaggtgaaaagcttttagctggagccaattttgcttcagctggaat 796  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48101466 caggccaaaaacttggtattgagtcggtattgccatacttgagtccacgactaagaggtgaaaagcttttagctggagccaattttgcttcagctggaat 48101565  T
Q  797 tggcattctcaacgatactggagttcaatttgtaagtatgctagttgccattgtatatataatcaaatcaaatgtaaacttcggtttattgtattgaa-n 895  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  48101566 tggcattctcaacgatactggagttcaatttgtaagtatgctagttgccattgtatatataatcaaatcaaatgtaaacttcggtttattgtattgaatt 48101665  T
Q  896 nnnnnnaattttgcagctt-atataatcagaatgtatagacaattagattacttcg-agagtaccaacatcgagtggcttctatgatcggcgcag-ccga 992  Q
          ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||    
T  48101666 tttttaaattttgcagcttaatataatcagaatgtatagacaattagattacttcgaagagtaccaacatcgagtggcctctatgatcggcgcagcccga 48101765  T
Q  993 gctgag-agt--gtcaataaagca-tagtcctcatcac 1026  Q
    |||||| |||  |||||||||||| |||||||||||||    
T  48101766 gctgagaagttggtcaataaagcattagtcctcatcac 48101803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 20 - 261
Target Start/End: Original strand, 33611079 - 33611320
Alignment:
Q  20 aaataaacaacgggactaactagaaacatggattctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagttggtnn 119  Q
    |||||||||||||||| | |||| |||||||  ||||||||||| |||| | |||||   ||| ||||||||||| ||||||||||||||||||||||      
T  33611079 aaataaacaacgggaccagctagtaacatggcatctcctgcaagaacatgaacaaccctgtttgcttgtcgcctaacaaactccaccctagagttggtaa 33611178  T
Q  120 nnnnngagttgaatagagatcgacaagaagaaataacgcacccaaattcagaaatgtcttcttgagtagaatgaaaagcgtcatgggtaatcttggaatc 219  Q
         ||  |||| ||||| ||||| || ||  ||| ||||| ||||||| || |||| ||| || ||| ||| || || |||   |||| ||| |||||    
T  33611179 agaaagaactgaacagagaccgacatgatgaggtaatgcaccaaaattcataagtgtcgtctcgattagcatggaatgcatcacaagtaagcttagaatc 33611278  T
Q  220 gggttcaaaatcaacattgtcaaattgcatattacttaacca 261  Q
     | ||||||||| ||||||||||||||||||| ||| |||||    
T  33611279 tgtttcaaaatcgacattgtcaaattgcatatcactcaacca 33611320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 75 - 261
Target Start/End: Complemental strand, 27810514 - 27810328
Alignment:
Q  75 ccacatttacttgtcgcctagcaaactccaccctagagttggtnnnnnnngagttgaatagagatcgacaagaagaaataacgcacccaaattcagaaat 174  Q
    |||||||| |||||| | ||||||| |||||||||||||||||       ||||||||||| || |||||||| | ||| | |||||  |||||||||||    
T  27810514 ccacatttgcttgtctcatagcaaattccaccctagagttggtaaaataagagttgaatagtgaacgacaagatgcaatgatgcacctgaattcagaaat 27810415  T
Q  175 gtcttcttgagtagaatgaaaagcgtcatgggtaatcttggaatcgggttcaaaatcaacattgtcaaattgcatattacttaacca 261  Q
    ||  ||   ||||||||||||||||||| | || || || || ||   ||||||||||| ||||||||| ||||||| ||| |||||    
T  27810414 gttgtcacaagtagaatgaaaagcgtcaagagtgatattagagtcaacttcaaaatcaatattgtcaaactgcatatcactcaacca 27810328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 774 - 833
Target Start/End: Original strand, 48074729 - 48074788
Alignment:
Q  774 gccaattttgcttcagctggaattggcattctcaacgatactggagttcaatttgtaagt 833  Q
    |||||||| ||||| ||||||||||| |||||||| ||||||||| ||||||||||||||    
T  48074729 gccaatttcgcttctgctggaattggaattctcaatgatactggaattcaatttgtaagt 48074788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 116
Target Start/End: Complemental strand, 15633320 - 15633227
Alignment:
Q  23 taaacaacgggactaactagaaacatggattctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagttgg 116  Q
    ||||||||||||||| |||| ||| ||| ||||| ||||||   || ||||||| ||||  ||||||||||| |||||||||||| ||||||||    
T  15633320 taaacaacgggactagctagtaacgtggcttctcttgcaagagtatgagcaacctcattggcttgtcgcctaacaaactccacccgagagttgg 15633227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 774 - 834
Target Start/End: Original strand, 1808059 - 1808119
Alignment:
Q  774 gccaattttgcttcagctggaattggcattctcaacgatactggagttcaatttgtaagta 834  Q
    |||||||||| ||||||||||||||| || || || ||||| |||||||||||||||||||    
T  1808059 gccaattttggttcagctggaattggaatccttaatgataccggagttcaatttgtaagta 1808119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 13015009 - 13015105
Alignment:
Q  20 aaataaacaacgggactaactagaaacatggattctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagttgg 116  Q
    ||||||||||| |||||| |||| ||| ||||||||| ||||||  ||| ||||||| | ||  ||||||||||| |||||| ||||| ||||||||    
T  13015009 aaataaacaacaggactagctagtaacgtggattctcttgcaagagcatgagcaacctcgttggcttgtcgcctaacaaactacacccgagagttgg 13015105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 141; Significance: 2e-73; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 4614984 - 4614743
Alignment:
Q  20 aaataaacaacgggactaactagaaacatggattctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagttggtnn 119  Q
    |||| |||||||| ||||  ||||||| ||| |||| |||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||      
T  4614984 aaatcaacaacggaactagttagaaacgtggcttcttctgcaagcacatgagcaaccacatttgtttgtcgcctagcaaactccaccctagagttggtaa 4614885  T
Q  120 nnnnngagttgaatagagatcgacaagaagaaataacgcacccaaattcagaaatgtcttcttgagtagaatgaaaagcgtcatgggtaatcttggaatc 219  Q
         ||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||| ||||||||||||||||| | ||||||||||| ||||    
T  4614884 aaaaagagttgaatagagatcgacaagaagaaataatgcactcaaattcagaattgtcttctttagtagaatgaaaagcgtaacgggtaatcttgaaatc 4614785  T
Q  220 gggttcaaaatcaacattgtcaaattgcatattacttaacca 261  Q
    || ||||||||||||||||||||||||||||| | |||||||    
T  4614784 ggtttcaaaatcaacattgtcaaattgcatatcaattaacca 4614743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 13288181 - 13288034
Alignment:
Q  20 aaataaacaacgggactaactagaaacatggattctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagttggtnn 119  Q
    |||||||||||||||||| ||||||| |||| ||||||||||||||||| ||||||| |||||  |||||||||||||||||||||||||||||||||      
T  13288181 aaataaacaacgggactagctagaaatatggcttctcctgcaagcacatgagcaaccgcatttgtttgtcgcctagcaaactccaccctagagttggtaa 13288082  T
Q  120 nnnnngagttgaatagagatcgacaagaagaaataacgcacccaaatt 167  Q
         ||| |||| ||| |||||||||||||||||| |||||||||||    
T  13288081 aagaagagctgaaaagaaatcgacaagaagaaataatgcacccaaatt 13288034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 24065307 - 24065076
Alignment:
Q  20 aaataaacaacgggactaactagaaacatggattctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagttggtnn 119  Q
    |||||||||||||||||| |||| ||| ||| |||||||||||| |||| ||||||| | ||| ||||||||||| |||||||||||||| |||||||      
T  24065307 aaataaacaacgggactagctagtaacgtggcttctcctgcaagaacatgagcaacctcgtttgcttgtcgcctaacaaactccaccctaaagttggtaa 24065208  T
Q  120 nnnnngagttgaatagagatcgacaagaagaaataacgcacccaaattcagaaatgtcttcttgagtagaatgaaaagcgtcatgggtaatcttggaatc 219  Q
         ||  | || ||||| || || || || |||| |||||||||||||||| |||| ||| || ||| ||| || || |||   |||| ||||| |||    
T  24065207 agaaagaactaaacagagaccggcatgatgagataatgcacccaaattcagaagtgtcatctcgattagcatggaaggcatcacaagtaaacttggtatc 24065108  T
Q  220 gggttcaaaatcaacattgtcaaattgcatat 251  Q
     | ||||||||| || ||||||||||||||||    
T  24065107 cgtttcaaaatcgacgttgtcaaattgcatat 24065076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 34696149 - 34696244
Alignment:
Q  20 aaataaacaacgggactaactagaaacatggattctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagttg 115  Q
    |||||||||||| ||||| |||||||| |||  |||||| | ||   || ||||||||||||| |||||| ||||||||||||||||| |||||||    
T  34696149 aaataaacaacgagactagctagaaacgtggtctctccttcgagagtatgagcaaccacattttcttgtctcctagcaaactccacccgagagttg 34696244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 756 - 833
Target Start/End: Complemental strand, 35377957 - 35377880
Alignment:
Q  756 gaaaagcttttagctggagccaattttgcttcagctggaattggcattctcaacgatactggagttcaatttgtaagt 833  Q
    ||||| ||||||| ||| ||||||||||| || || || ||||| |||||||| ||||||||| ||||||||||||||    
T  35377957 gaaaaacttttagttggtgccaattttgcatccgcgggtattggaattctcaatgatactggatttcaatttgtaagt 35377880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 753 - 833
Target Start/End: Complemental strand, 35359042 - 35358962
Alignment:
Q  753 ggtgaaaagcttttagctggagccaattttgcttcagctggaattggcattctcaacgatactggagttcaatttgtaagt 833  Q
    |||||||| ||||||| ||| ||||||||||| ||||| ||  |||| |||||||| ||||| ||| ||||||||||||||    
T  35359042 ggtgaaaaacttttagttggtgccaattttgcatcagcaggtgttggaattctcaatgataccggatttcaatttgtaagt 35358962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 4614722 - 4614677
Alignment:
Q  259 ccaaagcttcaccaacatcaaccgaataaatacatggaaaactgac 304  Q
    |||| |||||| ||||||||||| ||||||||||||||||||||||    
T  4614722 ccaatgcttcagcaacatcaaccaaataaatacatggaaaactgac 4614677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 41117272 - 41117187
Alignment:
Q  31 gggactaactagaaacatggattctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagttgg 116  Q
    ||||||| |||| ||| ||| ||||| ||||||  ||| ||||||| ||||  ||||||||||| |||||||||||| ||||||||    
T  41117272 gggactagctagtaacgtggcttctcttgcaagagcatgagcaacctcattggcttgtcgcctaacaaactccacccgagagttgg 41117187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 753 - 833
Target Start/End: Complemental strand, 35372311 - 35372231
Alignment:
Q  753 ggtgaaaagcttttagctggagccaattttgcttcagctggaattggcattctcaacgatactggagttcaatttgtaagt 833  Q
    |||||||| ||||||| ||| |||||||||||||| || ||  |||| ||||| || ||||| ||| ||||||||||||||    
T  35372311 ggtgaaaaacttttagttggtgccaattttgcttctgcgggcgttggaattcttaatgatacaggaattcaatttgtaagt 35372231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 40490060 - 40490154
Alignment:
Q  20 aaataaacaacgggactaactagaaacatggattctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagtt 114  Q
    ||||||||| ||||||||||||| |||  |  ||||| ||||||  ||| ||| ||| ||||   |||||||||| |||||||||||||||||||    
T  40490060 aaataaacagcgggactaactagtaacgcgacttctcttgcaagagcatgagcgacctcattggtttgtcgcctaacaaactccaccctagagtt 40490154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 770 - 831
Target Start/End: Complemental strand, 29768888 - 29768827
Alignment:
Q  770 tggagccaattttgcttcagctggaattggcattctcaacgatactggagttcaatttgtaa 831  Q
    |||||||||||||||||||||||| ||||| ||||| || || || ||  ||||||||||||    
T  29768888 tggagccaattttgcttcagctgggattggaattcttaatgacaccggcattcaatttgtaa 29768827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 1e-68; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 49499504 - 49499263
Alignment:
Q  20 aaataaacaacgggactaactagaaacatggattctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagttggtnn 119  Q
    ||||||| |||| ||||| |||||||| ||| ||||| |||||| |||| |||| |||||||| ||||||||||||||||||||||||||||||||||      
T  49499504 aaataaataacgagactagctagaaacgtggcttctcttgcaagaacatgagcagccacatttgcttgtcgcctagcaaactccaccctagagttggtaa 49499405  T
Q  120 nnnnngagttgaatagagatcgacaagaagaaataacgcacccaaattcagaaatgtcttcttgagtagaatgaaaagcgtcatgggtaatcttggaatc 219  Q
         ||| |||| |||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  49499404 aaaaagagctgaacagagatcgacaagaagaaataatgcacccgaattctgaaatgtcttcttgagtagaatgaaaagcgtcacgagtaatcttggaatc 49499305  T
Q  220 gggttcaaaatcaacattgtcaaattgcatattacttaacca 261  Q
    |  |||||||||||||| ||||||||||| || |||||||||    
T  49499304 gatttcaaaatcaacatcgtcaaattgcaaatcacttaacca 49499263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 264 - 359
Target Start/End: Complemental strand, 49499237 - 49499142
Alignment:
Q  264 gcttcaccaacatcaaccgaataaatacatggaaaactgacgatctttgccaagacaaacgtaccatcagaatcccaaatacaaatgccaattcca 359  Q
    ||||| |||||||||||||| ||||||||||||||||||||    |||||||||||||| ||||| |||||||||| || ||||||| ||||||||    
T  49499237 gcttcgccaacatcaaccgagtaaatacatggaaaactgacagcttttgccaagacaaatgtaccgtcagaatcccgaacacaaatgtcaattcca 49499142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 16739476 - 16739572
Alignment:
Q  20 aaataaacaacgggactaactagaaacatggattctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagttgg 116  Q
    |||||||||||||||||| |||| ||| ||| ||||| ||||||  ||| ||||| | | ||   |||||||||| |||||||||||| ||||||||    
T  16739476 aaataaacaacgggactagctagtaacgtggcttctcttgcaagagcattagcaatctcgttggtttgtcgcctaacaaactccacccgagagttgg 16739572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 4e-59; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 37061095 - 37061324
Alignment:
Q  20 aaataaacaacgggactaactagaaacatggattctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagttggtnn 119  Q
    |||||||||||||||||| |||||||||||| ||||| ||||||||||| |||||||||||||  ||||| |||||||||||||||||||||||||||      
T  37061095 aaataaacaacgggactagctagaaacatggcttctcttgcaagcacatgagcaaccacatttgtttgtcacctagcaaactccaccctagagttggtaa 37061194  T
Q  120 nnnnngagttgaatagagatcgacaagaagaaataacgcacccaaattcagaaatgtcttcttgagtagaatgaaaagcgtcatgggtaatcttggaatc 219  Q
         ||| |||| |||||| ||||||||||||||| |||||||||||||||||| || ||||||||||||| ||||| || | | ||||||||| | ||    
T  37061195 aagaagagctgaaaagagattgacaagaagaaataatgcacccaaattcagaaatatcgtcttgagtagaataaaaagtgttacgagtaatcttgtagtc 37061294  T
Q  220 gggttcaaaatcaacattgtcaaattgcat 249  Q
    || ||| ||||||||||||| |||||||||    
T  37061295 ggtttcgaaatcaacattgttaaattgcat 37061324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 20 - 249
Target Start/End: Complemental strand, 13686102 - 13685873
Alignment:
Q  20 aaataaacaacgggactaactagaaacatggattctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagttggtnn 119  Q
    |||||||||| ||||||| |||| ||| ||  ||||| |||||| |||| ||||||| | ||| ||||||||||| ||||||||||||||||||||||      
T  13686102 aaataaacaatgggactagctagtaacgtgacttctcttgcaagaacatgagcaaccccgtttgcttgtcgcctaacaaactccaccctagagttggtaa 13686003  T
Q  120 nnnnngagttgaatagagatcgacaagaagaaataacgcacccaaattcagaaatgtcttcttgagtagaatgaaaagcgtcatgggtaatcttggaatc 219  Q
         ||  |||| | ||| ||||| || || |||| |||||||||||||||| ||||  ||||| ||| ||| || || |||   |||| |||||||||    
T  13686002 acaaagaactgaacaaagaccgacatgatgagataatgcacccaaattcagaagtgtcgccttgattagcatggaatgcatcacaagtaagcttggaatc 13685903  T
Q  220 gggttcaaaatcaacattgtcaaattgcat 249  Q
     | ||||||| | || ||||||||||||||    
T  13685902 cgtttcaaaaccgacgttgtcaaattgcat 13685873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 780 - 833
Target Start/End: Complemental strand, 6342831 - 6342778
Alignment:
Q  780 tttgcttcagctggaattggcattctcaacgatactggagttcaatttgtaagt 833  Q
    |||||||| ||||| ||||| |||||||| || |||||||||||||||||||||    
T  6342831 tttgcttctgctgggattggaattctcaatgacactggagttcaatttgtaagt 6342778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 26949288 - 26949227
Alignment:
Q  53 tctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagtt 114  Q
    |||||||||||| ||| |||  |||||||| |||||||| ||| ||||||||||||||||||    
T  26949288 tctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaaactccaccctagagtt 26949227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 117
Target Start/End: Complemental strand, 12355264 - 12355221
Alignment:
Q  74 accacatttacttgtcgcctagcaaactccaccctagagttggt 117  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||    
T  12355264 accacattaccttgtcgcctaacaaactccaccctagagttggt 12355221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 27066640 - 27066683
Alignment:
Q  74 accacatttacttgtcgcctagcaaactccaccctagagttggt 117  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||    
T  27066640 accacattagcttgtcgcctaacaaactccaccctagagttggt 27066683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 27066834 - 27066877
Alignment:
Q  74 accacatttacttgtcgcctagcaaactccaccctagagttggt 117  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||    
T  27066834 accacattagcttgtcgcctaacaaactccaccctagagttggt 27066877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 27087547 - 27087590
Alignment:
Q  74 accacatttacttgtcgcctagcaaactccaccctagagttggt 117  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||    
T  27087547 accacattagcttgtcgcctaacaaactccaccctagagttggt 27087590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 16431401 - 16431495
Alignment:
Q  20 aaataaacaacgggactaactagaaacatggattctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagtt 114  Q
    ||||||||| ||||| ||||||| ||| ||| ||||| ||||||  ||| | ||||| | ||   |||||||||| |||||||||||||||||||    
T  16431401 aaataaacagcgggagtaactagtaacgtggcttctcttgcaagagcatgaacaacctcgttggtttgtcgcctaacaaactccaccctagagtt 16431495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 6e-46; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 92 - 251
Target Start/End: Complemental strand, 23622542 - 23622383
Alignment:
Q  92 ctagcaaactccaccctagagttggtnnnnnnngagttgaatagagatcgacaagaagaaataacgcacccaaattcagaaatgtcttcttgagtagaat 191  Q
    ||||||||||||||||||||||||||       ||| |||| |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||    
T  23622542 ctagcaaactccaccctagagttggtaaaagaagagctgaaaagagatcgacaagaagaaataatgcacccaaattcagaaatgtcgtctcgagtagaat 23622443  T
Q  192 gaaaagcgtcatgggtaatcttggaatcgggttcaaaatcaacattgtcaaattgcatat 251  Q
    ||||||| ||| | ||||||||||  |||| |||||||||||||||||||||||||||||    
T  23622442 gaaaagcatcaagagtaatcttggtgtcggtttcaaaatcaacattgtcaaattgcatat 23622383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 264 - 365
Target Start/End: Original strand, 29955757 - 29955858
Alignment:
Q  264 gcttcaccaacatcaaccgaataaatacatggaaaactgacgatctttgccaagacaaacgtaccatcagaatcccaaatacaaatgccaattccagttt 363  Q
    |||||||||||||||||||| |||||||||||||||||| | |  |||||||||||||||| ||| ||| |||||| || ||||||| |||||| |||||    
T  29955757 gcttcaccaacatcaaccgagtaaatacatggaaaactggcaacttttgccaagacaaacgcaccttcaaaatcccgaacacaaatgtcaattctagttt 29955856  T
Q  364 gg 365  Q
    ||    
T  29955857 gg 29955858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 29955510 - 29955674
Alignment:
Q  20 aaataaacaacgggactaactagaaacatggattctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagttggtnn 119  Q
    |||||||||| | |||||  ||||||| ||  ||||| | ||||||||| |||||||| ||||  ||||||||||||||||||||   ||||||||||      
T  29955510 aaataaacaatgagactagttagaaacgtgacttctcttacaagcacatgagcaaccatatttgtttgtcgcctagcaaactcca---tagagttggtaa 29955606  T
Q  120 nnnnngagttgaatagagatcgacaagaagaaataacgcacccaaattcagaaatgtcttcttgagta 187  Q
         ||| ||||||||||||||||||||||||||| |||  ||||| |||||||||| ||| |||||    
T  29955607 aagaagagctgaatagagatcgacaagaagaaataatgcatgcaaatccagaaatgtcgtctcgagta 29955674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 53 - 257
Target Start/End: Complemental strand, 19237727 - 19237523
Alignment:
Q  53 tctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagttggtnnnnnnngagttgaatagagatcgacaagaagaaa 152  Q
    |||| |||||| |||| ||||||| ||||| |||||||||||  |||||||||||||||||||||       ||   ||| ||||||||||| || || |    
T  19237727 tctcttgcaagaacatgagcaacctcatttgcttgtcgcctaataaactccaccctagagttggtaaagaaagaaccgaagagagatcgacatgatgaga 19237628  T
Q  153 taacgcacccaaattcagaaatgtcttcttgagtagaatgaaaagcgtcatgggtaatcttggaatcgggttcaaaatcaacattgtcaaattgcatatt 252  Q
    ||| ||||||||||||| || |||| ||| ||  || ||| || || |||   |||| ||||||||| | |||||||||||| ||||||||||||||||     
T  19237627 taatgcacccaaattcaaaagtgtcatctcgatgagcatggaaggcatcacaagtaagcttggaatccgtttcaaaatcaacgttgtcaaattgcatatc 19237528  T
Q  253 actta 257  Q
    |||||    
T  19237527 actta 19237523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 264 - 362
Target Start/End: Complemental strand, 23622347 - 23622249
Alignment:
Q  264 gcttcaccaacatcaaccgaataaatacatggaaaactgacgatctttgccaagacaaacgtaccatcagaatcccaaatacaaatgccaattccagtt 362  Q
    ||||||||||| |||||||| |||||||||||||||||||| |  || |||||||||||| |||| ||||| ||   || |||||||||||||||||||    
T  23622347 gcttcaccaacgtcaaccgagtaaatacatggaaaactgacaactttggccaagacaaacttaccttcagagtcatgaacacaaatgccaattccagtt 23622249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 2157823 - 2157919
Alignment:
Q  20 aaataaacaacgggactaactagaaacatggattctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagttgg 116  Q
    |||||||||||||||||| |||| ||| ||| ||||| ||||||  ||||||||| | | ||  ||||||||||| |||||||||||| ||||||||    
T  2157823 aaataaacaacgggactagctagtaacgtggcttctcttgcaagagcataagcaatctcgttggcttgtcgcctaacaaactccacccgagagttgg 2157919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 23622597 - 23622542
Alignment:
Q  20 aaataaacaacgggactaactagaaacatggattctcctgcaagcacataagcaac 75  Q
    |||||||||||| ||||| |||||||| ||| ||||||||||||||||| ||||||    
T  23622597 aaataaacaacgagactagctagaaacgtggcttctcctgcaagcacatgagcaac 23622542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 29755053 - 29755096
Alignment:
Q  74 accacatttacttgtcgcctagcaaactccaccctagagttggt 117  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||    
T  29755053 accacattagcttgtcgcctaacaaactccaccctagagttggt 29755096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 6783371 - 6783313
Alignment:
Q  56 cctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagtt 114  Q
    |||||||| |||  || |||||||||| |||||||||||  ||||||||||||||||||    
T  6783371 cctgcaaggacacgagtaaccacatttgcttgtcgcctattaaactccaccctagagtt 6783313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 40299946 - 40299901
Alignment:
Q  70 agcaaccacatttacttgtcgcctagcaaactccaccctagagttg 115  Q
    ||||||||| ||| ||||||||||| |||||||||||| |||||||    
T  40299946 agcaaccacgtttgcttgtcgcctaacaaactccacccgagagttg 40299901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 1e-40; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 33650971 - 33650723
Alignment:
Q  20 aaataaacaacgggactaactagaaacatggattctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagttggtnn 119  Q
    |||||||||||||||||| |||||||| ||  |||| |||||||||||| | ||||| ||||| ||||| |||| ||||||| ||| |||||||||||      
T  33650971 aaataaacaacgggactagctagaaacgtgacttcttctgcaagcacatgaacaaccgcatttgcttgttgcctggcaaacttcactctagagttggtaa 33650872  T
Q  120 nnnnn-------gagttgaatagagatcgacaagaagaaataacgcacccaaattcagaaatgtcttcttgagtagaatgaaaagcgtcatgggtaatct 212  Q
                ||||||||||||||||||||||||||||||| |||| |||||||||||||||  ||| |||||||| |||||| || |   |||||||    
T  33650871 aaaaaaaaaaaagagttgaatagagatcgacaagaagaaataatgcactcaaattcagaaatgtagtctcgagtagaaagaaaagtgttacaagtaatct 33650772  T
Q  213 tggaatcgggttcaaaatcaacattgtcaaattgcatattacttaacca 261  Q
    || |||||  ||||||||||||||||||||||||||||| ||| |||||    
T  33650771 tgaaatcgatttcaaaatcaacattgtcaaattgcatatcactcaacca 33650723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 11818489 - 11818586
Alignment:
Q  20 aaataaacaacgggactaactagaaacatggattctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagttggt 117  Q
    ||||||| |||||||||| |||| ||| ||| |||||||||||| |||| ||||||| | ||| ||||||||||| ||||||||||||||||||||||    
T  11818489 aaataaataacgggactagctagtaacgtggcttctcctgcaagaacatgagcaacctcgtttgcttgtcgcctaacaaactccaccctagagttggt 11818586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 264 - 357
Target Start/End: Complemental strand, 33650697 - 33650606
Alignment:
Q  264 gcttcaccaacatcaaccgaataaatacatggaaaactgacgatctttgccaagacaaacgtaccatcagaatcccaaatacaaatgccaattc 357  Q
    ||||||||||||  |||||  |||||||||||||||||||| |  |||||||||||||||  ||| ||| |||||  || ||||||||||||||    
T  33650697 gcttcaccaacacaaaccgggtaaatacatggaaaactgacaacttttgccaagacaaac--accttcacaatcctgaacacaaatgccaattc 33650606  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 27267935 - 27268028
Alignment:
Q  21 aataaacaacgggactaactagaaacatggattctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagtt 114  Q
    ||||||||| |||||||||||| ||| ||| ||||| ||||||   || ||||||| | ||  |||||| |||| |||||||||||||||||||    
T  27267935 aataaacaatgggactaactagtaacgtggcttctcttgcaagtgtatgagcaacctcgttagcttgtcacctaacaaactccaccctagagtt 27268028  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 36641453 - 36641358
Alignment:
Q  20 aaataaacaacgggactaactagaaacatggattctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagttg 115  Q
    |||||||||||||||||| |||| ||  ||| ||||  ||||||  ||| ||||||| | ||  ||||||||||| |||||||||||| |||||||    
T  36641453 aaataaacaacgggactagctagtaatgtggcttcttttgcaagagcatgagcaacctcgttggcttgtcgcctaacaaactccacccgagagttg 36641358  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 11553410 - 11553324
Alignment:
Q  31 gggactaactagaaacatggattctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagttggt 117  Q
    ||||||| |||| ||  ||| ||||||||| || |||| | ||||| ||||  ||||||||| || |||||||||||||||||||||    
T  11553410 gggactagctagtaatgtggcttctcctgcgagaacatgatcaacctcattagcttgtcgccgagtaaactccaccctagagttggt 11553324  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 44886357 - 44886295
Alignment:
Q  52 ttctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagtt 114  Q
    ||||| ||||||  ||| ||||||| | || |||||||||||| |||||||||||||||||||    
T  44886357 ttctcttgcaagtgcatgagcaaccgcgttgacttgtcgcctaacaaactccaccctagagtt 44886295  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 14995241 - 14995196
Alignment:
Q  70 agcaaccacatttacttgtcgcctagcaaactccaccctagagttg 115  Q
    ||||| ||||||| |||||| ||||||||||||||||| |||||||    
T  14995241 agcaatcacatttccttgtctcctagcaaactccacccgagagttg 14995196  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 17826791 - 17826750
Alignment:
Q  74 accacatttacttgtcgcctagcaaactccaccctagagttg 115  Q
    ||||||||  ||||||||||||||||||||||| ||||||||    
T  17826791 accacattatcttgtcgcctagcaaactccaccgtagagttg 17826750  T

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Target: chr8 (Bit Score: 53; Significance: 7e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 2246767 - 2247004
Alignment:
Q  20 aaataaacaacgggactaactagaaacatggattctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagttggtnn 119  Q
    |||||||||||  ||||| |||| ||||||  |||||||||||| |||| ||||||| | ||| ||||| ||||| ||||||||||||||||||||||      
T  2246767 aaataaacaacatgactagctagtaacatgacttctcctgcaagaacatgagcaacctcgtttgcttgttgcctaacaaactccaccctagagttggtaa 2246866  T
Q  120 nnnnngagttgaatagagatcgacaagaagaaataacgcacccaaattcagaaatgtcttcttgagtagaatgaaaagcgtcatgggtaatcttggaatc 219  Q
         || || || ||||| ||||| || || |||| |||||||||||||||| |||| ||| || ||| |||  | || |||   ||||  ||||||||    
T  2246867 agaaagaattaaacagagaccgacatgatgagataatgcacccaaattcagaagtgtcatctcgattagcatgggaggcatcacaagtaagtttggaatc 2246966  T
Q  220 gggttcaaaatcaacattgtcaaattgcatattactta 257  Q
     | ||||||||| || |||| ||||||||||| |||||    
T  2246967 cgtttcaaaatcgacgttgttaaattgcatatcactta 2247004  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 953764 - 953675
Alignment:
Q  20 aaataaacaacgggactaactagaaacatggattctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccacccta 109  Q
    |||||||||||||||||| |||| ||| ||  |||||||||||| |||| ||||| | | ||| ||||||||  | ||||||||||||||    
T  953764 aaataaacaacgggactagctagtaacgtgacttctcctgcaagaacatgagcaaactcgtttgcttgtcgctaaacaaactccacccta 953675  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 42080558 - 42080463
Alignment:
Q  20 aaataaacaacgggactaactagaaacatggattctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagttg 115  Q
    ||||||||||||||| |  ||| |||  |||  |||||||||||   || ||||| ||||||| |||||| ||||||||||||||||| |||||||    
T  42080558 aaataaacaacgggattggctacaaatgtggtctctcctgcaagagtatgagcaatcacatttgcttgtctcctagcaaactccacccgagagttg 42080463  T

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Target: chr6 (Bit Score: 50; Significance: 4e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 23 - 257
Target Start/End: Original strand, 23508899 - 23509133
Alignment:
Q  23 taaacaacgggactaactagaaacatggattctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagttggtnnnnn 122  Q
    ||||||||||||||| || | ||  ||| |||||||||||| |||| ||||||| ||||| ||||||||||| |||||||||||||||| |||||         
T  23508899 taaacaacgggactagctcgtaatgtggcttctcctgcaagaacatgagcaaccccatttgcttgtcgcctaacaaactccaccctagaattggtaaaga 23508998  T
Q  123 nngagttgaatagagatcgacaagaagaaataacgcacccaaattcagaaatgtcttcttgagtagaatgaaaagcgtcatgggtaatcttggaatcggg 222  Q
      ||  | |||||||| ||||| || || |||| ||||| |||||||||| |||| ||| || ||| ||| || || |||    ||| |||||||||       
T  23508999 aagaactaaatagagaccgacatgatgagataatgcacctaaattcagaagtgtcatctcgattagcatggaaggcatcacaattaagcttggaatccat 23509098  T
Q  223 ttcaaaatcaacattgtcaaattgcatattactta 257  Q
    ||||||||| || |||| ||||||||||| |||||    
T  23509099 ttcaaaatcgacgttgtaaaattgcatatcactta 23509133  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 725 - 831
Target Start/End: Complemental strand, 7387614 - 7387508
Alignment:
Q  725 attgccatacttgagtccacgactaagaggtgaaaagcttttagctggagccaattttgcttcagctggaattggcattctcaacgatactggagttcaa 824  Q
    |||||||||||| |||||   | ||||||| ||||||||| ||| |||||| ||||||||||||||||||||||| || ||||| || |||||  |||||    
T  7387614 attgccatacttaagtcctgaattaagaggagaaaagcttctagttggagctaattttgcttcagctggaattggaatactcaatgacactgggattcaa 7387515  T
Q  825 tttgtaa 831  Q
    |||||||    
T  7387514 tttgtaa 7387508  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 16416662 - 16416598
Alignment:
Q  53 tctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagttggt 117  Q
    ||||||||||| | |  ||||||| ||||||||||||||||| |||||| |||||||||||||||    
T  16416662 tctcctgcaagaatacgagcaacctcatttacttgtcgcctaacaaactacaccctagagttggt 16416598  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 30141038 - 30141081
Alignment:
Q  74 accacatttacttgtcgcctagcaaactccaccctagagttggt 117  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||    
T  30141038 accacattagcttgtcgcctaacaaactccaccctagagttggt 30141081  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 34355790 - 34355884
Alignment:
Q  20 aaataaacaacgggactaactagaaacatggattctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagtt 114  Q
    ||||||||| |||||||| |||| ||||||| ||||| ||||||  ||| ||||||| | ||  ||| |||| || |||||| ||||||||||||    
T  34355790 aaataaacagcgggactagctagtaacatggtttctcttgcaagagcatgagcaacctcgttggcttttcgcataacaaacttcaccctagagtt 34355884  T

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Target: scaffold0019 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 73387 - 73479
Alignment:
Q  23 taaacaacgggactaactagaaacatggattctcctgcaagcacataagcaaccacatttacttgtcgcctagcaaactccaccctagagttg 115  Q
    ||||||||||||||| |||||||| |||  |||||||| ||   || ||||||||||||| |||||| | ||||||||||||||| |||||||    
T  73387 taaacaacgggactagctagaaacgtggtctctcctgcgagtgtatcagcaaccacatttgcttgtctcttagcaaactccacccgagagttg 73479  T

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