View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2887-Insertion-3 (Length: 957)

Name: NF2887-Insertion-3
Description: NF2887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2887-Insertion-3
NF2887-Insertion-3
[»] chr3 (36 HSPs)
chr3 (8-640)||(26630197-26630829)
chr3 (642-950)||(26629931-26630231)
chr3 (16-147)||(28084397-28084531)
chr3 (12-148)||(27389231-27389370)
chr3 (164-230)||(26128196-26128262)
chr3 (164-230)||(26178246-26178312)
chr3 (44-209)||(19477130-19477294)
chr3 (43-211)||(28005122-28005290)
chr3 (48-143)||(27349947-27350042)
chr3 (166-240)||(27459619-27459693)
chr3 (12-223)||(28003461-28003677)
chr3 (12-100)||(11420458-11420546)
chr3 (12-100)||(27919741-27919829)
chr3 (166-223)||(28036704-28036761)
chr3 (12-143)||(27379285-27379415)
chr3 (164-230)||(26129500-26129566)
chr3 (164-226)||(26179550-26179612)
chr3 (164-230)||(26202083-26202149)
chr3 (164-226)||(26235981-26236043)
chr3 (170-228)||(27377535-27377593)
chr3 (12-86)||(28054931-28055004)
chr3 (12-86)||(28065356-28065429)
chr3 (11-84)||(27377679-27377751)
chr3 (25-100)||(26629052-26629129)
chr3 (12-84)||(27390701-27390772)
chr3 (194-233)||(11420322-11420361)
chr3 (164-231)||(19476128-19476195)
chr3 (12-100)||(27979869-27979959)
chr3 (50-84)||(12147134-12147168)
chr3 (50-88)||(19476250-19476288)
chr3 (166-224)||(27390827-27390885)
chr3 (45-87)||(27775530-27775572)
chr3 (164-236)||(8539827-8539900)
chr3 (166-223)||(27919615-27919672)
chr3 (166-223)||(27979743-27979800)
chr3 (12-85)||(28149172-28149244)
[»] scaffold1142 (1 HSPs)
scaffold1142 (12-240)||(1315-1542)
[»] chr2 (4 HSPs)
chr2 (48-100)||(22394306-22394358)
chr2 (166-228)||(22392464-22392526)
chr2 (11-84)||(22392608-22392680)
chr2 (66-147)||(22399987-22400068)
[»] scaffold0043 (1 HSPs)
scaffold0043 (166-228)||(53885-53947)


Alignment Details
Target: chr3 (Bit Score: 556; Significance: 0; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 8 - 640
Target Start/End: Complemental strand, 26630829 - 26630197
Alignment:
Q  8 gtaatataattcaatacctgcattaaaaaagagtcaaaaaagaatacaagcaaaataggggaaatgccttttgtttaggagccactaattgtaaatctgt 107  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26630829 gtaatataattcaattcctgcattaaaaaagagtcaaaaaagaatacaagcaaaataggggaaatgccttttgtttaggagccactaattgtaaatctgt 26630730  T
Q  108 ctcattctttgttcctgaaatgatggacaaacttgctgcttatattttgcctaacttagaaccctccaactaattgcaaaccatggaaatgtaaattagt 207  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26630729 ctcattctttgttcctgaaatgatggacaaacttgctgcttctattttgcctaacatagaaccctccaactaattgcaaaccatggaaatgtaaattagt 26630630  T
Q  208 tgcatgatatttttaagtagtagttgaagtaaatgcttgaaagcttggttccatacagtaaactcacatgcgaagatgttttatgctcataaataactaa 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||    
T  26630629 tgcatgatatttttaagtagtagttgaagtaaatgcttgaaagcttggttccatacagtaaactcacatgtgaagatgttttaagctcataagtaactaa 26630530  T
Q  308 tggccctgatgatgaaatattcggttctgaatgagttggcgatgttattgtcttggcattagctatagttgttgtatcttcaaaacttaacttgataacc 407  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26630529 tggccctgatgatgaaatattcggttctgaatgagttgccgatgttattgtcttggcattagctatagttgttgtatcttcaaaacttaacttgataacc 26630430  T
Q  408 ttcataaaattaaaaagatattacagtgggctgcaatttagcataattgatttccaatataagttgnnnnnnngtcaagcgaatagttgccttttgtata 507  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||       ||| |||||||||||||||||||| |     
T  26630429 ttcataaaattaaaaagatattacagtgggttgcaatttagcataattgatttccaatataagttgaaagagagtcgagcgaatagttgccttttgtttg 26630330  T
Q  508 ggagcagctaattgtatagtagactcgttccttgtttctgaaacggtggcaaaggttgttgcgacagttttctgtaaagtagaaccctcttgaatacttt 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  26630329 ggagcagctaattgtatagtagactcgttccttgtttctgaaacggtggcaaaagttgttgcgacagttttctgtaacgtagaaccctcttgaatacttt 26630230  T
Q  608 gatccatcaaacattgttgactctttgattgtt 640  Q
    ||||||||||||||||||||||| |||||||||    
T  26630229 gatccatcaaacattgttgactcgttgattgtt 26630197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 642 - 950
Target Start/End: Complemental strand, 26630231 - 26629931
Alignment:
Q  642 ttgatccatcaaacattgttgactcgttgattgttcattcaacaacttctacaatttggaaactaagcgttagatatgtgaaactactaattacatccct 741  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || | ||| ||||| ||||||||||| ||||||||||||||||||||| |||    
T  26630231 ttgatccatcaaacattgttgactcgttgattgttcattcaacaactcctgcgattaggaaattaagcgttagagatgtgaaactactaattacattcct 26630132  T
Q  742 tatacttagccattcattatatccataagaacggatttcataagaagaatatcgaaggaagggacatggctggaaaattacttgtgaatttgttggtgaa 841  Q
    ||||        ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26630131 tata--------ttcattatatccataagaatggattttataagaagaatatcgaaggaagggacatggctggaaaattacttgtgaaattgttggtgaa 26630040  T
Q  842 tttgctactgaaggtatctctaaaccaggaatgtttaagacaaagtttggctttctctcttctgtttgtttcatttttgtctccactacatttgacttat 941  Q
    |||||||| ||||| ||||||||||||||||||||||  ||||| | | ||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  26630039 tttgctaccgaaggaatctctaaaccaggaatgtttacaacaaattcttgctttctctcttctgtttgtttcatttttgtctccacaacatttgactcat 26629940  T
Q  942 tgccatttt 950  Q
    |||||||||    
T  26629939 tgccatttt 26629931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 28084531 - 28084397
Alignment:
Q  16 attcaatacctgcattaaaaaagagtcaaaaaagaatacaagcaaaataggggaaatgccttttgtttaggagcca---ctaattgtaaatctgtctcat 112  Q
    ||||||| |||||||| | ||| | || |||||||||||||||||||||||||| ||||||||||||||||||| |   ||||||||| |  |  |||||    
T  28084531 attcaattcctgcattgagaaaaactcgaaaaagaatacaagcaaaataggggatatgccttttgtttaggagcaacgtctaattgtataggtagctcat 28084432  T
Q  113 tctttgttcctgaaatgatggacaaacttgctgct 147  Q
    ||||||||||||||||| |||||||  ||||||||    
T  28084431 tctttgttcctgaaatggtggacaatgttgctgct 28084397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 27389231 - 27389370
Alignment:
Q  12 tataattcaatacctgcattaaaaaagagtcaaaaaagaatacaagcaaaataggggaaatgccttttgtttaggagcca---ctaattgtaaatctgtc 108  Q
    ||||||| ||| |||||||| | ||| ||| ||||||||||| ||||||||||||| |||| ||||||||||||| || |   ||||||||| |  || |    
T  27389231 tataattgaattcctgcattgagaaaaagtaaaaaaagaatagaagcaaaatagggaaaataccttttgtttaggtgcaacgtctaattgtataggtggc 27389330  T
Q  109 tcattctttgttcctgaaatgatggacaaacttgctgctt 148  Q
    |||||||||||| |||||||| |||| ||  |||||||||    
T  27389331 tcattctttgtttctgaaatggtggaaaattttgctgctt 27389370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 26128196 - 26128262
Alignment:
Q  164 tagaaccctccaactaattgcaaaccatggaaatgtaaattagttgcatgatatttttaagtagtag 230  Q
    |||||||||| ||||||||||| | |||| ||||||||||||||||||| ||||||| |||||||||    
T  26128196 tagaaccctctaactaattgcatagcatgaaaatgtaaattagttgcattatattttcaagtagtag 26128262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 26178246 - 26178312
Alignment:
Q  164 tagaaccctccaactaattgcaaaccatggaaatgtaaattagttgcatgatatttttaagtagtag 230  Q
    |||||||||| ||||||||||| | |||| ||||||||||||||||||| ||||||| |||||||||    
T  26178246 tagaaccctctaactaattgcatagcatgaaaatgtaaattagttgcattatattttcaagtagtag 26178312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 209
Target Start/End: Complemental strand, 19477294 - 19477130
Alignment:
Q  44 aaaaagaatacaagcaaaataggggaaatgccttttgtttaggagccactaattgtaaatctgtctcattctttgttcctgaaatgatggacaaacttgc 143  Q
    ||||| ||||||||||||  |||| |||| |||||||||||||||| |||||||| | |  || || |||||||||| || ||||| |||||||| | |     
T  19477294 aaaaacaatacaagcaaac-agggcaaataccttttgtttaggagcaactaattgcatagttggcttattctttgtttctaaaatggtggacaaagtcgt 19477196  T
Q  144 tgcttatattttgcctaacttagaaccctccaactaattgcaaaccatggaaatgtaaattagttg 209  Q
    ||||| ||||||  ||||  | ||| |||||||||||||||| |  ||| ||||||||||| ||||    
T  19477195 tgcttctattttttctaatattgaaacctccaactaattgcatagaatgcaaatgtaaattggttg 19477130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 211
Target Start/End: Complemental strand, 28005290 - 28005122
Alignment:
Q  43 aaaaaagaatacaagcaaaataggggaaatgccttttgtttaggagccactaattgtaaatctgtctcattctttgttcctgaaatgatggacaaacttg 142  Q
    ||||||||||||||| |||||  |||| || |||||||||  ||||  |||||||||| |   | |||||| ||||||||||||||| |||||||| ||     
T  28005290 aaaaaagaatacaagaaaaattagggagataccttttgttccggagaaactaattgtataggaggctcattttttgttcctgaaatggtggacaaagttt 28005191  T
Q  143 ctgcttatattttgcctaacttagaaccctccaactaattgcaaaccatggaaatgtaaattagttgca 211  Q
    |  ||  || |||  || |  |||| ||||||||||||||||| | |||| ||||||||||||||||||    
T  28005190 cacctactaatttttctgatgtagagccctccaactaattgcatagcatgaaaatgtaaattagttgca 28005122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 143
Target Start/End: Complemental strand, 27350042 - 27349947
Alignment:
Q  48 agaatacaagcaaaataggggaaatgccttttgtttaggagccactaattgtaaatctgtctcattctttgttcctgaaatgatggacaaacttgc 143  Q
    ||||||| || |||||| |||||||||||||||||||||||| |||||||||| |  || |||||   ||||| |||||||| |||||||| ||||    
T  27350042 agaatactaggaaaataagggaaatgccttttgtttaggagcaactaattgtataggtggctcatcgattgtttctgaaatggtggacaaagttgc 27349947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 27459619 - 27459693
Alignment:
Q  166 gaaccctccaactaattgcaaaccatggaaatgtaaattagttgcatgatatttttaagtagtagttgaagtaaa 240  Q
    |||||||||||||  ||||| | |||| ||||||||||||||||||   ||||||||||||||| ||||||||||    
T  27459619 gaaccctccaactgcttgcataacatgaaaatgtaaattagttgcaacttatttttaagtagtatttgaagtaaa 27459693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 28003677 - 28003461
Alignment:
Q  12 tataattcaatacctgcattaaaaaagagtcaaaaaagaa-tacaagcaaaat-aggggaaatgccttttgtttaggagccactaattgtaaatctgtct 109  Q
    ||||||||||| ||| |||| |||||| ||||||||| || ||||||||||||  ||| ||||||||||||||| | | | |||||||||| |  |  ||    
T  28003677 tataattcaattcctacattgaaaaagtgtcaaaaaaaaagtacaagcaaaatgtgggaaaatgccttttgttttgaatcaactaattgtataggtagct 28003578  T
Q  110 cattct---ttgttcctgaaatgatggacaaacttgctgcttatattttgcctaacttagaaccctccaactaattgcaaaccatggaaatgtaaattag 206  Q
    ||||||   ||||| |||||||| |||||||| ||| ||||    ||||  || |  | ||||||||||||| |||||| | |||| ||||||||||||     
T  28003577 cattctttgttgtttctgaaatggtggacaaagttgatgctacatttttttctgatgttgaaccctccaactgattgcataacatgaaaatgtaaattac 28003478  T
Q  207 ttgcatgatatttttaa 223  Q
    |||||  ||||||||||    
T  28003477 ttgcaacatatttttaa 28003461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 11420546 - 11420458
Alignment:
Q  12 tataattcaatacctgcattaaaaaagagtcaaaaaagaatacaagcaaaat-aggggaaatgccttttgtttaggagccactaattgta 100  Q
    ||||||| |||  ||||||||||||||||| ||| ||||||||||| ||||| |||||||||||||| ||||||| |||  |||||||||    
T  11420546 tataattaaatttctgcattaaaaaagagt-aaagaagaatacaagaaaaatgaggggaaatgccttatgtttagaagcagctaattgta 11420458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 27919829 - 27919741
Alignment:
Q  12 tataattcaatacctgcattaaaaaagagtcaaaaaagaatacaagcaaaat-aggggaaatgccttttgtttaggagccactaattgta 100  Q
    ||||||||||| ||| |||| |||||| || |||||  |||||||| ||||| |||||||||||||||||||||||||  ||||||||||    
T  27919829 tataattcaattcctacattgaaaaagtgttaaaaat-aatacaagaaaaatgaggggaaatgccttttgtttaggagaaactaattgta 27919741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 28036761 - 28036704
Alignment:
Q  166 gaaccctccaactaattgcaaaccatggaaatgtaaattagttgcatgatatttttaa 223  Q
    ||||||||||||| |||||| | |||| ||||||||||||||||||| ||||||||||    
T  28036761 gaaccctccaactgattgcataacatgaaaatgtaaattagttgcatcatatttttaa 28036704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 143
Target Start/End: Complemental strand, 27379415 - 27379285
Alignment:
Q  12 tataattcaatacctgcattaaaaaagagtcaaaaaagaatacaagcaaaataggggaaatgccttttgtttaggagccactaattgtaaatctgtctca 111  Q
    |||||||||||  ||||||| |||| | |||||| | |||||| |  |||||| |||||||||||||||||| ||||| |||||||||| |  || ||||    
T  27379415 tataattcaattactgcattgaaaatgtgtcaaaca-gaatactaagaaaataagggaaatgccttttgtttcggagcaactaattgtataggtggctca 27379317  T
Q  112 ttctttgttcctgaaatgatggacaaacttgc 143  Q
    |   ||||| |||||||| |||||||| ||||    
T  27379316 tcgattgtttctgaaatggtggacaaagttgc 27379285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 26129500 - 26129566
Alignment:
Q  164 tagaaccctccaactaattgcaaaccatggaaatgtaaattagttgcatgatatttttaagtagtag 230  Q
    |||||||||||| |||| |||| | |||| |||||||| |||||||||  |||||||||||||||||    
T  26129500 tagaaccctccagctaaatgcatagcatgaaaatgtaatttagttgcagcatatttttaagtagtag 26129566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 26179550 - 26179612
Alignment:
Q  164 tagaaccctccaactaattgcaaaccatggaaatgtaaattagttgcatgatatttttaagta 226  Q
    ||||||||||||||||||||||   |||| |||||||| |||||||||  |||||||||||||    
T  26179550 tagaaccctccaactaattgcattgcatgaaaatgtaagttagttgcagcatatttttaagta 26179612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 26202083 - 26202149
Alignment:
Q  164 tagaaccctccaactaattgcaaaccatggaaatgtaaattagttgcatgatatttttaagtagtag 230  Q
    |||||||||||| || | |||| | |||| ||||||||||||||||||| ||||||| |||||||||    
T  26202083 tagaaccctccagctgaatgcatagcatgaaaatgtaaattagttgcattatattttcaagtagtag 26202149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 26235981 - 26236043
Alignment:
Q  164 tagaaccctccaactaattgcaaaccatggaaatgtaaattagttgcatgatatttttaagta 226  Q
    ||||||||||||||||||||||   |||| ||||||||||||||||||  |||||| ||||||    
T  26235981 tagaaccctccaactaattgcattgcatgaaaatgtaaattagttgcagcatatttataagta 26236043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 27377593 - 27377535
Alignment:
Q  170 cctccaactaattgcaaaccatggaaatgtaaattagttgcatgatatttttaagtagt 228  Q
    |||||||||||||||| | |||| |||| |||||||||||||  |||||||||||||||    
T  27377593 cctccaactaattgcatagcatgaaaatataaattagttgcagaatatttttaagtagt 27377535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 28055004 - 28054931
Alignment:
Q  12 tataattcaatacctgcattaaaaaagagtcaaaaaagaatacaagcaaaataggggaaatgccttttgtttagg 86  Q
    ||||||||||| |||||||| | |||| || |||||| ||||||||||||  |||||||||||||||||| ||||    
T  28055004 tataattcaattcctgcattgacaaagtgttaaaaaa-aatacaagcaaatcaggggaaatgccttttgtatagg 28054931  T

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Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 28065429 - 28065356
Alignment:
Q  12 tataattcaatacctgcattaaaaaagagtcaaaaaagaatacaagcaaaataggggaaatgccttttgtttagg 86  Q
    ||||||||||| |||||||| | |||| || |||||| ||||||||||||  |||||||||||||||||| ||||    
T  28065429 tataattcaattcctgcattgacaaagtgttaaaaaa-aatacaagcaaatcaggggaaatgccttttgtatagg 28065356  T

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Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 27377751 - 27377679
Alignment:
Q  11 atataattcaatacctgcattaaaaaagagtcaaaaaagaatacaagcaaaataggggaaatgccttttgttta 84  Q
    |||||||||||| ||||||||  ||||| |||| || | ||||| |||||||||| ||||||||||||||||||    
T  27377751 atataattcaattcctgcattggaaaagtgtcagaata-aatacgagcaaaatagaggaaatgccttttgttta 27377679  T

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Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 26629129 - 26629052
Alignment:
Q  25 ctgcattaaaaaagagtcaaaaaagaatacaagcaaaatagggga---aatgccttttgtttaggagccactaattgta 100  Q
    ||||||| |||||| |||||||  |||||||||||||||||||||   | |||||||||||||||||  ||||||||||    
T  26629129 ctgcattgaaaaagtgtcaaaac-gaatacaagcaaaataggggaatcagtgccttttgtttaggagtaactaattgta 26629052  T

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Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 27390701 - 27390772
Alignment:
Q  12 tataattcaatacctgcattaaaaaagagtcaaaaaagaatacaagcaaaataggggaaatgccttttgttta 84  Q
    ||||||| ||| |||||||| ||||||  ||| |||| |||||| ||||||||| ||||||||||||||||||    
T  27390701 tataatttaattcctgcattgaaaaagtttcagaaaa-aatacaggcaaaatagaggaaatgccttttgttta 27390772  T

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Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 233
Target Start/End: Complemental strand, 11420361 - 11420322
Alignment:
Q  194 aaatgtaaattagttgcatgatatttttaagtagtagttg 233  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  11420361 aaatgtaaattagttgcaacatatttttaagtagtagttg 11420322  T

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Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 19476195 - 19476128
Alignment:
Q  164 tagaaccctccaactaattgcaaaccatggaaatgtaaattagttgcatgatatttttaagtagtagt 231  Q
    ||||||||||||||||||| || | || | |||||||||||||||| |  |||||||||||| |||||    
T  19476195 tagaaccctccaactaattccatagcaagaaaatgtaaattagttgtaacatatttttaagttgtagt 19476128  T

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Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 27979959 - 27979869
Alignment:
Q  12 tataattcaatacctgcattaaaaaagagtcaa--aaaagaatacaagcaaaataggggaaatgccttttgtttaggagccactaattgta 100  Q
    ||||| ||||| |||||||| |||||| || ||  ||||||||||||| |||||  |||| |||| |||||||||||||  ||||||||||    
T  27979959 tataactcaattcctgcattgaaaaagtgtaaattaaaagaatacaagaaaaattagggagatgctttttgtttaggagaaactaattgta 27979869  T

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Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 12147168 - 12147134
Alignment:
Q  50 aatacaagcaaaataggggaaatgccttttgttta 84  Q
    |||||||||||||||| ||||||||||||||||||    
T  12147168 aatacaagcaaaatagaggaaatgccttttgttta 12147134  T

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Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 88
Target Start/End: Complemental strand, 19476288 - 19476250
Alignment:
Q  50 aatacaagcaaaataggggaaatgccttttgtttaggag 88  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  19476288 aatacaagcaaaatagaggaaatgcctttagtttaggag 19476250  T

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Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 27390827 - 27390885
Alignment:
Q  166 gaaccctccaactaattgcaaaccatggaaatgtaaattagttgcatgatatttttaag 224  Q
    |||||||||||||||||||| | |||| |||| |||||||||||||  ||||| |||||    
T  27390827 gaaccctccaactaattgcataacatgaaaatttaaattagttgcagcatattattaag 27390885  T

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Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 27775572 - 27775530
Alignment:
Q  45 aaaagaatacaagcaaaataggggaaatgccttttgtttagga 87  Q
    ||||||||| ||| ||||| |||||||||||||||||||||||    
T  27775572 aaaagaatataagaaaaatcggggaaatgccttttgtttagga 27775530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 8539827 - 8539900
Alignment:
Q  164 tagaaccctccaactaattgcaaaccatggaaatgtaaattagttgcatgatatttt-taagtagtagttgaag 236  Q
    ||||||||||||||| |||||| |  ||| ||||||||||||||||| | ||||||| |||||| ||| |||||    
T  8539827 tagaaccctccaactgattgcataaaatgaaaatgtaaattagttgcgtcatattttgtaagtattagatgaag 8539900  T

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Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 27919672 - 27919615
Alignment:
Q  166 gaaccctccaactaattgcaaaccatggaaatgtaaattagttgcatgatatttttaa 223  Q
    ||||||||||||| |||||| | || | ||||||||||||||||||  ||||||||||    
T  27919672 gaaccctccaactgattgcataacaagaaaatgtaaattagttgcaacatatttttaa 27919615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 27979800 - 27979743
Alignment:
Q  166 gaaccctccaactaattgcaaaccatggaaatgtaaattagttgcatgatatttttaa 223  Q
    ||||||||||||| |||||| | || | ||||||||||||||||||  ||||||||||    
T  27979800 gaaccctccaactgattgcataacaagaaaatgtaaattagttgcaacatatttttaa 27979743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 28149244 - 28149172
Alignment:
Q  12 tataattcaatacctgcattaaaaaagagtcaaaaaagaatacaagcaaaataggggaaatgccttttgtttag 85  Q
    ||||||||||| |||||||| | |||| ||  |||| |||||| ||||||||  ||||||||||||||||||||    
T  28149244 tataattcaattcctgcattgacaaagtgttcaaaa-gaatactagcaaaatgagggaaatgccttttgtttag 28149172  T

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Target: scaffold1142 (Bit Score: 57; Significance: 3e-23; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 1542 - 1315
Alignment:
Q  12 tataattcaatacctgcattaaaaaagagtcaaaaaagaatacaagcaaaataggggaaatgccttttgtttaggagccactaattgtaaatctgtctca 111  Q
    |||| |||||| |||||||| |||| | |||||||| |||||| || || ||| |||||||||||||| ||  ||||  |||||||||| |  || ||||    
T  1542 tatatttcaattcctgcattgaaaaggcgtcaaaaa-gaatactagaaatataagggaaatgcctttttttccggagaaactaattgtataggtggctca 1444  T
Q  112 ttctttgttcctgaaatgatggacaaacttgctgcttatattttgcctaacttagaaccctccaactaattgcaaaccatggaaatgtaaattagttgca 211  Q
    ||  |||||||||||||| |||||||| ||||  ||  || |||  || |    || ||||||||||||||||| |||||  ||||||||||||||||||    
T  1443 ttgattgttcctgaaatggtggacaaagttgcacctgctaatttttctgatgctgagccctccaactaattgcataccataaaaatgtaaattagttgca 1344  T
Q  212 tgatatttttaagtagtagttgaagtaaa 240  Q
      ||||||||||||||||||| |||||||    
T  1343 gcatatttttaagtagtagttaaagtaaa 1315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 22394358 - 22394306
Alignment:
Q  48 agaatacaagcaaaataggggaaatgccttttgtttaggagccactaattgta 100  Q
    ||||||| || |||||| |||||||||||||||||||||||| ||||||||||    
T  22394358 agaatactaggaaaataagggaaatgccttttgtttaggagcaactaattgta 22394306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 22392526 - 22392464
Alignment:
Q  166 gaaccctccaactaattgcaaaccatggaaatgtaaattagttgcatgatatttttaagtagt 228  Q
    ||||||||||||| |||||  | |||| ||||||||||||||||||  |||||||||||||||    
T  22392526 gaaccctccaactgattgcgtagcatgaaaatgtaaattagttgcagaatatttttaagtagt 22392464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 22392680 - 22392608
Alignment:
Q  11 atataattcaatacctgcattaaaaaagagtcaaaaaagaatacaagcaaaataggggaaatgccttttgttta 84  Q
    ||||||| |||| ||||||||  ||||| |||| ||  ||||||||| ||||||| ||||||||||||||||||    
T  22392680 atataatacaattcctgcattggaaaagtgtcagaat-gaatacaagaaaaatagaggaaatgccttttgttta 22392608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 22400068 - 22399987
Alignment:
Q  66 gggaaatgccttttgtttaggagccactaattgtaaatctgtctcattctttgttcctgaaatgatggacaaacttgctgct 147  Q
    ||||||||||||| ||||| |||| |||||||||| |  || ||||||| |||| ||| ||||| |||| ||| ||||||||    
T  22400068 gggaaatgcctttggtttaagagcaactaattgtataggtggctcattccttgtacctaaaatggtggaaaaagttgctgct 22399987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 53885 - 53947
Alignment:
Q  166 gaaccctccaactaattgcaaaccatggaaatgtaaattagttgcatgatatttttaagtagt 228  Q
    ||||||||||||| || ||| | |||| ||||||||||||||||||  |||||||||||||||    
T  53885 gaaccctccaactgatagcatagcatgaaaatgtaaattagttgcacaatatttttaagtagt 53947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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