View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2887-Insertion-4 (Length: 976)

Name: NF2887-Insertion-4
Description: NF2887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2887-Insertion-4
NF2887-Insertion-4
[»] chr6 (3 HSPs)
chr6 (73-876)||(19747177-19747989)
chr6 (418-512)||(5978151-5978245)
chr6 (424-512)||(33568012-33568100)
[»] chr5 (1 HSPs)
chr5 (418-744)||(23085864-23086190)
[»] chr7 (3 HSPs)
chr7 (418-565)||(15507858-15508005)
chr7 (429-572)||(26235981-26236124)
chr7 (460-513)||(26255963-26256016)
[»] chr8 (2 HSPs)
chr8 (429-550)||(11345954-11346075)
chr8 (487-538)||(11359865-11359916)
[»] chr4 (1 HSPs)
chr4 (453-589)||(23839864-23840000)
[»] chr3 (1 HSPs)
chr3 (429-577)||(36339250-36339398)
[»] scaffold0649 (1 HSPs)
scaffold0649 (424-570)||(4592-4738)
[»] scaffold0707 (1 HSPs)
scaffold0707 (424-512)||(4406-4494)


Alignment Details
Target: chr6 (Bit Score: 707; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 707; E-Value: 0
Query Start/End: Original strand, 73 - 876
Target Start/End: Complemental strand, 19747989 - 19747177
Alignment:
Q  73 ccctgtaatcgtggatctcagattaatacaattgcagaacctattactctttccattctattactatactactcttatcttccagcatcagactccatca 172  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19747989 ccctgtaatcgtggatctcagattaatacaattgtagaacctattactctttccattctattactatactactcttatcttccagcatcagactccatca 19747890  T
Q  173 ggattggcttcaatattcatcacagagcaattttcgtttattaaacaaaaaatattcgtagatcttcacaccttttttatttgttttggttcatataaat 272  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19747889 ggattggcttcaatattcaccacagagcaattttcgtttattaaacaaaaaatattcgtagatcttcacaccttttttatttgttttggttcatataaat 19747790  T
Q  273 gtgcggcgtgcaaatttagataccaacatactttacatattcagata-------tataaatttagggttgaggagcgtcacagctctgatggagatcctt 365  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||       |||||||||||||||||| |||||||||||||||||||||||||||    
T  19747789 gtgcggcgtgcaaatttagataccatcatactttacatattcagatacacttcatataaatttagggttgagaagcgtcacagctctgatggagatcctt 19747690  T
Q  366 caggttaagaagcgtggtcaatccgactcacaacagctaacggtgcccctcgttcccgacgagctcatcgcagaaatcctatcctttcttaacgtgaaaa 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  19747689 caggttaagaagcgtggtcaatccgactcacaacagctaacggtgcccttcgttcccgacgaacttatcgcagaaatcctatcctttcttaacgtgaaaa 19747590  T
Q  466 ccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcgaccttcgtacaaaaacacctcaagaagtcttcacaaaacccaca 565  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19747589 ccatcatgcaattaaaatgtgtgagcaagtcatggaactctctcatcaatgattcgaccttcgtacaaaaacacctcaagaagtcttcacaaaatccaca 19747490  T
Q  566 catcatactcacaccaccaactttgaactatcctatcagtagtgtagagtccttccccgtgagtcgtttactcgagaatccttcaaatactgtttttggt 665  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  19747489 catcatactcacaccaccaactttgaaatatcctatcagtagtgtagagtccttccccgtgagtcgtttactcgagaatccttcaatcactgtttttggt 19747390  T
Q  666 gacaatttacatgattcgaatgatacttgtcaggttgttggttcctgcaatggattgttttgcttgattttccattctctccataggaagtatacaaaat 765  Q
    |||||||| ||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19747389 gacaatttccatgatttgaatgacacttgtcaggttattggttcctgcaatggattgttttgcttgattttccattctctccataggaagtatacaaaat 19747290  T
Q  766 actggttttgtttatggaatcctgccacgagaacaatatctgaagaattagggactttccgatgctac-acacttcatcagaaactttcaagttcgg-tt 863  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  19747289 actggttttgtttatggaatcctgccacgagaacaatatctgaagaattagggactttccgatgctacaacacttcatcagaaactttcaagttcggttt 19747190  T
Q  864 tggttgtgatatt 876  Q
    |||||||||||||    
T  19747189 tggttgtgatatt 19747177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 418 - 512
Target Start/End: Original strand, 5978151 - 5978245
Alignment:
Q  418 ttcccgacgagctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatc 512  Q
    |||| ||||| |||||||  ||||||||||| || |||| |||||||||||||   | ||| || ||||||| ||||||||||||| ||||||||    
T  5978151 ttcctgacgaactcatcgtcgaaatcctatcgttccttagcgtgaaaaccatcgcacgattcaagtgcgtgaacaagtcatggaacactctcatc 5978245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 424 - 512
Target Start/End: Original strand, 33568012 - 33568100
Alignment:
Q  424 acgagctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatc 512  Q
    |||| ||||| || |||||||| || ||||||| |||||| |||||||  ||||| || ||||| ||||| ||||||||||| ||||||    
T  33568012 acgaactcatagctgaaatcctttcttttcttagcgtgaagaccatcacacaattcaagtgcgtaagcaaatcatggaactcgctcatc 33568100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 5e-37; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 418 - 744
Target Start/End: Original strand, 23085864 - 23086190
Alignment:
Q  418 ttcccgacgagctcatcgcagaaatcct-atcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatg 516  Q
    |||||||||| ||||| || |||||||| || ||| ||||||  |||||| |||  || ||| |||||||| ||||||||||||||| ||||| ||   |    
T  23085864 ttcccgacgaactcattgccgaaatccttattctt-cttaacccgaaaacaatcgcgctattcaaatgcgtaagcaagtcatggaacactctcgtctccg 23085962  T
Q  517 attcgaccttcgtacaaaaacacctcaagaagtcttcacaaaacccacacatcatactcacaccaccaactttgaactatcctatcagtagtgtagagtc 616  Q
    || | | |||| || | || || || |||||||| |||||||||||||   ||||||||||||||| ||||| ||| || |||||||||| ||| || ||    
T  23085963 atccaatcttcataaagaatcatcttaagaagtcatcacaaaacccacgtctcatactcacaccactaacttcgaagtaccctatcagtaatgtcgaatc 23086062  T
Q  617 cttccccgtgagtcgtttactcgagaatccttcaaatactgtttttggtgacaatttacatgattcgaatgatacttgtcaggttgttggttcctgcaat 716  Q
    |||| | ||||||||||||||||||||| |||| |  | |||||  ||||||||||  ||||  ||  | || || ||||| ||||||||||||||||||    
T  23086063 cttctctgtgagtcgtttactcgagaattcttcgatcattgtttccggtgacaattgccatggatcagaggacacatgtcatgttgttggttcctgcaat 23086162  T
Q  717 ggattgttttgcttgattttccattctc 744  Q
    |||||| |||||||| ||||||||||||    
T  23086163 ggattgctttgcttgcttttccattctc 23086190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 3e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 418 - 565
Target Start/End: Original strand, 15507858 - 15508005
Alignment:
Q  418 ttcccgacgagctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatga 517  Q
    |||||||||||||||| || ||| |||||||||| |||||| | ||||||||| ||||| | |||||| ||||||||||||||||  |||||||   |||    
T  15507858 ttcccgacgagctcatagccgaagtcctatccttccttaacataaaaaccatcgtgcaactcaaatgcttgagcaagtcatggaaagctctcatatctga 15507957  T
Q  518 ttcgaccttcgtacaaaaacacctcaagaagtcttcacaaaacccaca 565  Q
    | | |||||| |  |||| ||||| |||||||| |||||||| |||||    
T  15507958 tccaaccttcatcgaaaagcaccttaagaagtcgtcacaaaagccaca 15508005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 429 - 572
Target Start/End: Original strand, 26235981 - 26236124
Alignment:
Q  429 ctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcgaccttcg 528  Q
    |||||| | |||||||| ||||| |||  ||| |||||| ||| || ||| ||||||||||||||||| |||||| ||||||||  |||| | |||||||    
T  26235981 ctcatcaccgaaatcctgtccttgctttgcgttaaaaccctcacgcgattcaaatgcgtgagcaagtcctggaacactctcatctctgatccaaccttcg 26236080  T
Q  529 tacaaaaacacctcaagaagtcttcacaaaacccacacatcata 572  Q
    |  | || || || |||||||| |||||||| |  |||||||||    
T  26236081 tcgacaaccatcttaagaagtcatcacaaaaacagcacatcata 26236124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 460 - 513
Target Start/End: Original strand, 26255963 - 26256016
Alignment:
Q  460 tgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatca 513  Q
    ||||||||||| ||| ||| ||||||||||||||||| |||||| |||||||||    
T  26255963 tgaaaaccatcgtgctattcaaatgcgtgagcaagtcttggaacactctcatca 26256016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 429 - 550
Target Start/End: Complemental strand, 11346075 - 11345954
Alignment:
Q  429 ctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcgaccttcg 528  Q
    ||||| || ||||||||||| || |||||||||||||||||  | ||||| |||||||||||||||||||||||| ||||||||   ||| |  ||||||    
T  11346075 ctcatagccgaaatcctatcattacttaacgtgaaaaccattgtccaattcaaatgcgtgagcaagtcatggaacactctcatctccgatccacccttcg 11345976  T
Q  529 tacaaaaacacctcaagaagtc 550  Q
    | ||||||||||| || |||||    
T  11345975 tccaaaaacaccttaaaaagtc 11345954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 487 - 538
Target Start/End: Complemental strand, 11359916 - 11359865
Alignment:
Q  487 tgagcaagtcatggaactctctcatcaatgattcgaccttcgtacaaaaaca 538  Q
    ||||||||||||||||| ||||||||  |||| |||||||||| ||||||||    
T  11359916 tgagcaagtcatggaacactctcatctctgatccgaccttcgtccaaaaaca 11359865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 453 - 589
Target Start/End: Original strand, 23839864 - 23840000
Alignment:
Q  453 cttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcgaccttcgtacaaaaacacctcaagaagtctt 552  Q
    |||||||||||||||||| ||| ||| ||||| |||||||||||||||||| ||||||||   ||| |  |||  ||  ||||| |||| || ||||| |    
T  23839864 cttaacgtgaaaaccatcttgcgattcaaatgtgtgagcaagtcatggaacactctcatctccgatccagcctatgtcaaaaaataccttaacaagtcgt 23839963  T
Q  553 cacaaaacccacacatcatactcacaccaccaacttt 589  Q
    || | ||||||||| ||||||||| ||||||||||||    
T  23839964 caaataacccacacctcatactcaaaccaccaacttt 23840000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 429 - 577
Target Start/End: Original strand, 36339250 - 36339398
Alignment:
Q  429 ctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcgaccttcg 528  Q
    |||||||| ||||||||||  || |||| ||||||||||||  ||| ||| || || |||||||||||||||||| ||||||||   ||| | || |||     
T  36339250 ctcatcgccgaaatcctattgttacttagcgtgaaaaccattgtgcgattcaagtgtgtgagcaagtcatggaacactctcatctcagatccaactttca 36339349  T
Q  529 tacaaaaacacctcaagaagtcttcacaaaacccacacatcatactcac 577  Q
    |  |||  ||||| ||||| |||||||||||||| ||| ||||||||||    
T  36339350 tcaaaatgcaccttaagaaatcttcacaaaaccctcacttcatactcac 36339398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0649 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 424 - 570
Target Start/End: Original strand, 4592 - 4738
Alignment:
Q  424 acgagctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcgac 523  Q
    |||| ||| |||| |||||||||||||| ||| |||||||| |  | | | || | ||||| |||||||| ||||||||||| ||||||   ||| | |     
T  4592 acgacctcgtcgccgaaatcctatccttccttgacgtgaaatctcttacgaaactcaaatgtgtgagcaaatcatggaactcactcatctccgatcccat 4691  T
Q  524 cttcgtacaaaaacacctcaagaagtcttcacaaaacccacacatca 570  Q
    |||||| ||||  ||||||||||| || |||||||||||||||||||    
T  4692 cttcgtccaaatgcacctcaagaaatcatcacaaaacccacacatca 4738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 424 - 512
Target Start/End: Original strand, 4406 - 4494
Alignment:
Q  424 acgagctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatc 512  Q
    |||| ||||| || |||||||| || ||||||| |||||| |||||||  ||||| || ||||| ||||| ||||||||||| ||||||    
T  4406 acgaactcatagctgaaatcctttcttttcttagcgtgaagaccatcacacaattcaagtgcgtaagcaaatcatggaactcgctcatc 4494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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