View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2887-Insertion-5 (Length: 815)

Name: NF2887-Insertion-5
Description: NF2887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2887-Insertion-5
NF2887-Insertion-5
[»] chr3 (7 HSPs)
chr3 (244-791)||(40583472-40584021)
chr3 (8-280)||(40583199-40583471)
chr3 (152-460)||(54873093-54873405)
chr3 (345-465)||(55430172-55430293)
chr3 (707-791)||(54873622-54873706)
chr3 (678-791)||(55429880-55429990)
chr3 (581-657)||(55430007-55430079)
[»] chr8 (2 HSPs)
chr8 (259-465)||(15919305-15919514)
chr8 (705-780)||(15919003-15919078)
[»] chr2 (3 HSPs)
chr2 (346-465)||(37785627-37785747)
chr2 (678-791)||(37785322-37785432)
chr2 (105-153)||(37785898-37785945)
[»] chr6 (4 HSPs)
chr6 (152-309)||(7020241-7020399)
chr6 (707-791)||(7020697-7020779)
chr6 (424-465)||(7020443-7020484)
chr6 (100-148)||(7020220-7020267)
[»] chr4 (2 HSPs)
chr4 (717-780)||(21373768-21373831)
chr4 (717-791)||(36253152-36253225)


Alignment Details
Target: chr3 (Bit Score: 477; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 244 - 791
Target Start/End: Original strand, 40583472 - 40584021
Alignment:
Q  244 taaagaggtacgcttgataatgttattatcgtccaggaaatagttcataacatgactaagaagaaaaggnnnnnnnttatttgatgtttaaaattaattt 343  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  40583472 taaagaggtacggttgataatgttattatcgtccaggaaatagttcataacatgactaagaagaaaaggaaaaaaattatttgatgtttaaaattaattt 40583571  T
Q  344 caaaaa-gcttatgatgtagtatattgaaatttcattcgcattactttttaggattttggttt-cctacttccattgttactcttattatgtactgcata 441  Q
    |||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  40583572 caaaaaagcttatgatgtagtatattgaaatttcattggcattagtttttaggattttggttttcctacttccattgttactcttattatgaactgcata 40583671  T
Q  442 acctcttctactttatctttgaagcagataagagacaaactatagagttttattctaaaaaaggcttaaaagtaaatggatcttatgtctccttaccttt 541  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40583672 acctcttctgctttatctttgaagcagataagagacaaactatagagttttattctaaaaaaggcttaaaagtaaatggatcttatgtctcattaccttt 40583771  T
Q  542 ttatcattgcatggaatgaaagttttctatgttacatggaaaattttctatgttaattcaggagaattaagattcaatacaacgaatggtacccgatcaa 641  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40583772 ttatcattgcatggaatgaaagttttctatgttacatggaaaattttctatgttaattcaggagaattaagattcaatacaacgaatggtacccgatcaa 40583871  T
Q  642 aatctccaataatggtatgactatttgtcatttatttcttttatttactcaagctaaataatactctcaagccataataatgaaagaggtgttagatagt 741  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40583872 aatctccaataatggtatgattatttgtcatttatttcttttatttactcaagctaaataatactctcaagccataataatgaaagagatgttagatagt 40583971  T
Q  742 ttttgtaatgcttctcggttgaaagttaatattcaaaaacctatattcat 791  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40583972 ttttgtaatgcttctcggttaaaagttaatattcaaaaacctatattcat 40584021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 8 - 280
Target Start/End: Original strand, 40583199 - 40583471
Alignment:
Q  8 caatcaggtactattgatccaaaaatgattgcggctcttataatctcaattcctaaaattgattgatgctcctttgtttttaagnnnnnnnnaggcctat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||        ||||||||    
T  40583199 caatcaggtactattgatccaaaaatgattgcggctcttataatatcaattcctaaaattgattgatgctcctttgtttttaagttttttttaggcctat 40583298  T
Q  108 tagcctttgcaaatattatgcttaaaattatttcaaaggtgttggttatgcttaaaattacttcaaaagtgctggtgatgaggattatacatcacttaaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  40583299 tagcctttgcaaatattatgcttaaaattatttcaaaggtgttggttatgcttaaaattacttcaaaggtgctggtgatgaggtttatacatcacttaaa 40583398  T
Q  208 tagccttatcaacccaatccaaagtggttttattcctaaagaggtacgcttgataatgttattatcgtccagg 280  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  40583399 tagccttatcaacccaattcaaagtggttttattcctaaagaggtatggttgataatgttattatcgtccagg 40583471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 152 - 460
Target Start/End: Original strand, 54873093 - 54873405
Alignment:
Q  152 gttatgcttaaaattacttcaaaagtgctggtgatgaggattatacatcacttaaatagccttatcaacccaatccaaagtggttttattcctaaa-gag 250  Q
    |||||||||||||||| ||| || |||||||||  |||||||| || ||| |||||||||||||||| |||  | |||||| |||||||||||||| ||     
T  54873093 gttatgcttaaaattatttctaaggtgctggtggggaggattagacctcatttaaatagccttatcagcccttttcaaagtagttttattcctaaacgaa 54873192  T
Q  251 gtacgcttgataatgttattatcgtccaggaaatagttcataacatgactaagaagaaaagg-nnnnnnnttatttgatgtttaaaatt-aatttcaaaa 348  Q
    | |||  |||||||||||||||||| || ||||||||||||||||||| |||||||||| ||        |||| |  |||| |||||| | ||| ||||    
T  54873193 gcacgactgataatgttattatcgtacatgaaatagttcataacatgaataagaagaaagggaaaaaaggttatcttttgttcaaaattgattttgaaaa 54873292  T
Q  349 agcttatgatgtagtatattgaaatttcattcgcattactttttaggattttggttt-cctacttccattgttactcttattatgtactgcataacctct 447  Q
    ||||||||||  |||| |||| |||||| |||| ||||||||  | ||||||||||| |||||||| ||| |||||||||||||| |||| |||| ||||    
T  54873293 agcttatgatagagtagattggaatttccttcgtattactttacatgattttggtttccctacttctattattactcttattatgaactgtataagctct 54873392  T
Q  448 tctactttatctt 460  Q
    |||||||||||||    
T  54873393 tctactttatctt 54873405  T

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Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 345 - 465
Target Start/End: Complemental strand, 55430293 - 55430172
Alignment:
Q  345 aaaaagcttatgatgtagtatattgaaatttcattcgcattactttttaggattttggtttcc-tacttccattgttactcttattatgtactgcataac 443  Q
    ||||||||||||||  |||| |||| |||||| |||| ||||||||  | ||||||||||||| ||||| |||| |||||||||||||| |||| |||||    
T  55430293 aaaaagcttatgatagagtagattggaatttccttcgtattactttacatgattttggtttccctactttcattattactcttattatgaactgtataac 55430194  T
Q  444 ctcttctactttatctttgaag 465  Q
    ||||||||||||||||||||||    
T  55430193 ctcttctactttatctttgaag 55430172  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 707 - 791
Target Start/End: Original strand, 54873622 - 54873706
Alignment:
Q  707 ctcaagccataataatgaaagaggtgttagatagtttttgtaatgcttctcggttgaaagttaatattcaaaaacctatattcat 791  Q
    ||||||| | |||| |||||||||| ||||| ||||||||| |||||||| ||||||||||||||||||||| | ||| ||||||    
T  54873622 ctcaagctagaatagtgaaagaggtattagagagtttttgtcatgcttctgggttgaaagttaatattcaaatatctagattcat 54873706  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 678 - 791
Target Start/End: Complemental strand, 55429990 - 55429880
Alignment:
Q  678 tcttttatttactcaagctaaataatactctcaagccataataatgaaagaggtgttagatagtttttgtaatgcttctcggttgaaagttaatattcaa 777  Q
    |||||| |||| |||||||||||    ||||||||| | |||| |||||||||| ||| | ||||||||| |||||||| |||| |||||||||||||||    
T  55429990 tcttttgtttaatcaagctaaatc---ctctcaagctagaatagtgaaagaggtcttaaagagtttttgtcatgcttctgggttaaaagttaatattcaa 55429894  T
Q  778 aaacctatattcat 791  Q
    ||| ||| ||||||    
T  55429893 aaatctagattcat 55429880  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 581 - 657
Target Start/End: Complemental strand, 55430079 - 55430007
Alignment:
Q  581 aaaattttctatgttaattcaggagaattaagattcaatacaacgaatggtacccgatcaaaatctccaataatggt 657  Q
    |||| ||||||||||||||||||||||    | ||||||  || |||||| | ||||||||||||||||||||||||    
T  55430079 aaaaatttctatgttaattcaggagaa----ggttcaatctaatgaatggcatccgatcaaaatctccaataatggt 55430007  T

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Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 259 - 465
Target Start/End: Complemental strand, 15919514 - 15919305
Alignment:
Q  259 gataatgttattatcgtccaggaaatagttcataacatgactaagaagaaaaggnnnnnnn-ttatttgatgtttaaaattaatttc-aaaaagcttatg 356  Q
    ||||||||||||||||   ||||||||||||||| ||||| |||||||||| ||        |||| |  |||| |||||| ||||  ||||||||||||    
T  15919514 gataatgttattatcgcataggaaatagttcatagcatgaataagaagaaagggaaaaacggttatattttgttcaaaattgattttgaaaaagcttatg 15919415  T
Q  357 atgtagtatattgaaatttcattcgcattactttttaggattttggtttcc-tacttccattgttactcttattatgtactgcataacctcttctacttt 455  Q
    ||  |||| |||| |||||  |||||||||||||    ||||||||||||| |||||||||| |||||||||||||| | || ||||||||||  |||||    
T  15919414 atagagtagattggaattttcttcgcattactttacgtgattttggtttccctacttccattattactcttattatgaagtgtataacctctttcacttt 15919315  T
Q  456 atctttgaag 465  Q
    ||||||||||    
T  15919314 atctttgaag 15919305  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 705 - 780
Target Start/End: Complemental strand, 15919078 - 15919003
Alignment:
Q  705 ctctcaagccataataatgaaagaggtgttagatagtttttgtaatgcttctcggttgaaagttaatattcaaaaa 780  Q
    ||||||||| | |||| ||||| |||||||||| ||||||||| |||||||| ||||||||||||||||| |||||    
T  15919078 ctctcaagctagaatagtgaaacaggtgttagagagtttttgtcatgcttctgggttgaaagttaatattaaaaaa 15919003  T

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Target: chr2 (Bit Score: 53; Significance: 5e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 346 - 465
Target Start/End: Complemental strand, 37785747 - 37785627
Alignment:
Q  346 aaaagcttatgatgtagtatattgaaatttcattcgcattactttttaggattttggtttcc-tacttccattgttactcttattatgtactgcataacc 444  Q
    |||||| |||||  ||||| |||| |||||| |||| ||||||||  | ||||||  ||||| |||||||||| |||||||||||||| |||| ||||||    
T  37785747 aaaagcatatgacatagtagattggaatttccttcgtattactttacatgattttaatttccctacttccattattactcttattatggactgtataacc 37785648  T
Q  445 tcttctactttatctttgaag 465  Q
    |||||||||||||||||||||    
T  37785647 tcttctactttatctttgaag 37785627  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 678 - 791
Target Start/End: Complemental strand, 37785432 - 37785322
Alignment:
Q  678 tcttttatttactcaagctaaataatactctcaagccataataatgaaagaggtgttagatagtttttgtaatgcttctcggttgaaagttaatattcaa 777  Q
    |||||| ||||||||||||||||    |||| |||| | |||| |||||||||||||| | || |||| | |||||||| | ||||||||||||||||||    
T  37785432 tcttttgtttactcaagctaaatc---ctcttaagctagaatagtgaaagaggtgttaaagagattttttcatgcttctggattgaaagttaatattcaa 37785336  T
Q  778 aaacctatattcat 791  Q
    ||| ||| ||||||    
T  37785335 aaatctagattcat 37785322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 37785945 - 37785898
Alignment:
Q  105 tattagcctttgcaaatattatgcttaaaattatttcaaaggtgttggt 153  Q
    ||||||||||||||| ||||||||||||||||||||  |||||||||||    
T  37785945 tattagcctttgcaa-tattatgcttaaaattattttcaaggtgttggt 37785898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 9e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 152 - 309
Target Start/End: Original strand, 7020241 - 7020399
Alignment:
Q  152 gttatgcttaaaattacttcaaaagtgctggtgatgaggattatacatcacttaaatagccttatcaacccaatccaaagtggttttattcctaaa-gag 250  Q
    |||||||||||||||| ||| || ||||| |||  |||||||| || ||| |||||||| ||||||| |||  | |||||| |||||||||||||| |||    
T  7020241 gttatgcttaaaattatttctaaggtgctagtggggaggattagacctcatttaaatagtcttatcagcccttttcaaagtagttttattcctaaacgag 7020340  T
Q  251 gtacgcttgataatgttattatcgtccaggaaatagttcataacatgactaagaagaaa 309  Q
    | |||  |||||||||||||||||  || ||||||||||||| ||| | ||| ||||||    
T  7020341 gcacgactgataatgttattatcgcacacgaaatagttcatagcataaataaaaagaaa 7020399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 707 - 791
Target Start/End: Original strand, 7020697 - 7020779
Alignment:
Q  707 ctcaagccataataatgaaagaggtgttagatagtttttgtaatgcttctcggttgaaagttaatattcaaaaacctatattcat 791  Q
    ||||||| | |||| |||||||||||| |||  |||||||| |||||||| ||||||||||||||||||| ||| ||| ||||||    
T  7020697 ctcaagctagaatagtgaaagaggtgtgaga--gtttttgtcatgcttctgggttgaaagttaatattcagaaatctagattcat 7020779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 424 - 465
Target Start/End: Original strand, 7020443 - 7020484
Alignment:
Q  424 cttattatgtactgcataacctcttctactttatctttgaag 465  Q
    ||||||||| |||| |||||||||||||||||||||||||||    
T  7020443 cttattatgaactgtataacctcttctactttatctttgaag 7020484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 7020220 - 7020267
Alignment:
Q  100 aggcctattagcctttgcaaatattatgcttaaaattatttcaaaggtg 148  Q
    |||||||||||||||||||| | ||||||||||||||||||| ||||||    
T  7020220 aggcctattagcctttgcaa-tgttatgcttaaaattatttctaaggtg 7020267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 717 - 780
Target Start/End: Original strand, 21373768 - 21373831
Alignment:
Q  717 aataatgaaagaggtgttagatagtttttgtaatgcttctcggttgaaagttaatattcaaaaa 780  Q
    |||| |||||||||||||||| ||||||||| |||||| | |||||||||||||||||||||||    
T  21373768 aatagtgaaagaggtgttagagagtttttgtcatgcttttgggttgaaagttaatattcaaaaa 21373831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 717 - 791
Target Start/End: Complemental strand, 36253225 - 36253152
Alignment:
Q  717 aataatgaaagaggtgttagatagtttttgtaatgcttctcggttgaaagttaatattcaaaaacctatattcat 791  Q
    |||| ||||||||||| |||| ||||||||| |||||||| |||| |||||||||||||||||| ||| ||||||    
T  36253225 aatattgaaagaggtggtagaaagtttttgtcatgcttct-ggttaaaagttaatattcaaaaatctagattcat 36253152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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