View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2887-Insertion-7 (Length: 676)

Name: NF2887-Insertion-7
Description: NF2887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2887-Insertion-7
NF2887-Insertion-7
[»] chr2 (22 HSPs)
chr2 (8-666)||(8403451-8404106)
chr2 (56-378)||(8429362-8429676)
chr2 (190-294)||(8376193-8376297)
chr2 (334-413)||(8368104-8368183)
chr2 (334-413)||(8401227-8401306)
chr2 (334-413)||(8422804-8422883)
chr2 (348-402)||(8411867-8411921)
chr2 (348-402)||(8433965-8434019)
chr2 (348-400)||(8376087-8376139)
chr2 (190-294)||(8395879-8395983)
chr2 (190-294)||(8405589-8405693)
chr2 (348-400)||(8431018-8431070)
chr2 (219-294)||(8430889-8430964)
chr2 (357-416)||(8459649-8459708)
chr2 (352-401)||(8416952-8417001)
chr2 (190-294)||(8411709-8411813)
chr2 (190-294)||(8433807-8433911)
chr2 (219-294)||(8416822-8416897)
chr2 (348-398)||(8405747-8405797)
chr2 (544-580)||(8368314-8368350)
chr2 (544-580)||(8401060-8401096)
chr2 (544-580)||(8422637-8422673)
[»] chr4 (2 HSPs)
chr4 (220-393)||(55335978-55336151)
chr4 (190-394)||(55330516-55330720)
[»] scaffold1738 (1 HSPs)
scaffold1738 (190-294)||(25-129)


Alignment Details
Target: chr2 (Bit Score: 581; Significance: 0; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 8 - 666
Target Start/End: Original strand, 8403451 - 8404106
Alignment:
Q  8 ctaacatgtgttaagtaagagtttcacctcaaacgttcaacatctttatttattttcaaaataatcgaaagaatctatatgtaaagaatgaatcaaacaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8403451 ctaacatgtgttaagtaagagtttcacctcaaacgttcaacatctttatttattttcaaaataatcgaaagaatctatatgtaaagaatgaatcaaacaa 8403550  T
Q  108 gaaattaaaacaaaaatgttgttttcagaagagcttgttggcgaattcatcgatctcacgtccttccatccgatagacatcagattttgaggcaagctct 207  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8403551 gaaatcaaaacaaaaatgttgttttcagaagagcttgttggcgaattcatcgatctcacgtccttccatccgatagacatcagattttgaggcaagctct 8403650  T
Q  208 ctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctcttcaatagtttgtt 307  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||    
T  8403651 ctcatctgcattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcatcattttctcttttattcaaatctttctcttcaataatttctt 8403750  T
Q  308 caactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaacaacagt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8403751 caactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaacaacagt 8403850  T
Q  408 tgccaaagcaccggaaaaagcaggaacaaaatttaccaacatttcatcacctacaaatgatgatcctatagctgcaattcctgttaacaaaggtccaaaa 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  8403851 tgccaaagcaccggaaaaagcaggaacaaaatttaccaacatttcatcacctacaaatgatgaccctatagctgcaattcctgttaacaaaggtcctaaa 8403950  T
Q  508 attgctaaacccttgttaatctttgatgcaatattccctaatctctcataatcctcaatatcttttctcttcaccacttcaattacctcattcatttcat 607  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8403951 attgctaaactcttgttaatctttaatgcaatattccctaatctctcataatcctcaatatcttttctcttcaccacttcaattacctccttcatttcat 8404050  T
Q  608 cttccaattccaaattccacccattattgctctcattattaatctccatcttattgttc 666  Q
     |||||| ||||||||||| |||||||| | |||   |||||||||||||||| |||||    
T  8404051 tttccaactccaaattccatccattattcccctc---attaatctccatcttactgttc 8404106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 56 - 378
Target Start/End: Original strand, 8429362 - 8429676
Alignment:
Q  56 tttattttcaaaataatcgaaagaatctatatgtaaagaatgaatcaaacaagaaattaaaacaaaaatgttgttttcagaagagcttgttggcgaattc 155  Q
    ||||||||||||||||| ||||||||   |||| |||||||||||||||||| |||        ||||||||||||||||||||| ||||||||||||||    
T  8429362 tttattttcaaaataattgaaagaattcgtatgaaaagaatgaatcaaacaaaaaa--------aaaatgttgttttcagaagagtttgttggcgaattc 8429453  T
Q  156 atcgatctcacgtccttccatccgatagacatcagattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctca 255  Q
    ||| ||||||||||||||||||||||||| | ||||||| |||||||  |||||||||||||||||||||||||||||||  || ||||||||||| |||    
T  8429454 atctatctcacgtccttccatccgatagagagcagatttcgaggcaaattctctcatctccattacacttcttcccaattttaaagcaatcttcatttca 8429553  T
Q  256 aacacctcaccattttctcttttattcaaatctttctcttcaatagtttgttcaactgtctcttccaaaagctcaaaaaatccaccacagtttctataca 355  Q
    ||||| || || ||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  8429554 aacacttccccgttttctcttttattcaaatctttatcttcaatagtttcttcaaccgtctcttccaaaagctcaaaaaatccactacagtttctataca 8429653  T
Q  356 tctcaaacaccataccaacttgt 378  Q
    ||| ||||| |||||||||||||    
T  8429654 tctgaaacatcataccaacttgt 8429676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 190 - 294
Target Start/End: Complemental strand, 8376297 - 8376193
Alignment:
Q  190 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 289  Q
    |||||||||||||| || |||| |||   ||||||||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  |||||||    
T  8376297 gattttgaggcaagttccctcagctctgatacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctt 8376198  T
Q  290 tctct 294  Q
    |||||    
T  8376197 tctct 8376193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 334 - 413
Target Start/End: Original strand, 8368104 - 8368183
Alignment:
Q  334 aatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaacaacagttgccaa 413  Q
    |||||||||||   ||||||||| ||| | ||||||||||||||||| ||||||||||||| ||||||| |||| |||||    
T  8368104 aatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaa 8368183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 334 - 413
Target Start/End: Complemental strand, 8401306 - 8401227
Alignment:
Q  334 aatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaacaacagttgccaa 413  Q
    |||||||||||   ||||||||| ||| | ||||||||||||||||| ||||||||||||| ||||||| |||| |||||    
T  8401306 aatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaa 8401227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 334 - 413
Target Start/End: Complemental strand, 8422883 - 8422804
Alignment:
Q  334 aatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaacaacagttgccaa 413  Q
    |||||||||||   ||||||||| ||| | ||||||||||||||||| ||||||||||||| ||||||| |||| |||||    
T  8422883 aatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaa 8422804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 348 - 402
Target Start/End: Original strand, 8411867 - 8411921
Alignment:
Q  348 tctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaaca 402  Q
    ||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||    
T  8411867 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaaca 8411921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 348 - 402
Target Start/End: Original strand, 8433965 - 8434019
Alignment:
Q  348 tctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaaca 402  Q
    ||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||    
T  8433965 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaaca 8434019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 348 - 400
Target Start/End: Complemental strand, 8376139 - 8376087
Alignment:
Q  348 tctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaa 400  Q
    ||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||    
T  8376139 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaa 8376087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 294
Target Start/End: Complemental strand, 8395983 - 8395879
Alignment:
Q  190 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 289  Q
    |||||||| ||||| || |||| |||   ||||||||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  |||||||    
T  8395983 gattttgatgcaagttccctcagctctgatacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctt 8395884  T
Q  290 tctct 294  Q
    |||||    
T  8395883 tctct 8395879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 294
Target Start/End: Original strand, 8405589 - 8405693
Alignment:
Q  190 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 289  Q
    |||||||| ||||| || |||| |||   ||||||||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  |||||||    
T  8405589 gattttgatgcaagttccctcagctcagatacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctt 8405688  T
Q  290 tctct 294  Q
    |||||    
T  8405689 tctct 8405693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 348 - 400
Target Start/End: Original strand, 8431018 - 8431070
Alignment:
Q  348 tctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaa 400  Q
    ||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||    
T  8431018 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaa 8431070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 219 - 294
Target Start/End: Original strand, 8430889 - 8430964
Alignment:
Q  219 tacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctct 294  Q
    ||||||| ||||||||||||| || |||||||| ||||| | ||| |||||||||||||| |  ||||||||||||    
T  8430889 tacactttttcccaattgcaaagccatcttcatttcaaatagctctccattttctcttttctctaaatctttctct 8430964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 357 - 416
Target Start/End: Complemental strand, 8459708 - 8459649
Alignment:
Q  357 ctcaaacaccataccaacttgtcctccatgctcaaaagtattaacaacagttgccaaagc 416  Q
    |||||| |||||||||||||| |||||||| || || || ||||||||||||||||||||    
T  8459708 ctcaaaaaccataccaacttgccctccatgttctaatgtgttaacaacagttgccaaagc 8459649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 352 - 401
Target Start/End: Original strand, 8416952 - 8417001
Alignment:
Q  352 tacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaac 401  Q
    ||||| ||||| ||||| ||||||||||| ||||||||||||||||||||    
T  8416952 tacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaac 8417001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 190 - 294
Target Start/End: Original strand, 8411709 - 8411813
Alignment:
Q  190 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 289  Q
    |||||||||||||| || |||| |||  | ||||||||||||||| |||| || || ||||  ||||| | ||| |||||||||||||| |  |||||||    
T  8411709 gattttgaggcaagttccctcagctctgtgacacttcttcccaatcgcaaagccattttcaattcaaatagctctccattttctcttttctctaaatctt 8411808  T
Q  290 tctct 294  Q
    |||||    
T  8411809 tctct 8411813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 190 - 294
Target Start/End: Original strand, 8433807 - 8433911
Alignment:
Q  190 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 289  Q
    |||||||||||||| || |||| |||  | ||||||||||||||| |||| || || ||||  ||||| | ||| |||||||||||||| |  |||||||    
T  8433807 gattttgaggcaagttccctcagctctgtgacacttcttcccaatcgcaaagccattttcaattcaaatagctctccattttctcttttctctaaatctt 8433906  T
Q  290 tctct 294  Q
    |||||    
T  8433907 tctct 8433911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 294
Target Start/End: Original strand, 8416822 - 8416897
Alignment:
Q  219 tacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctct 294  Q
    |||| |||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  ||||||||||||    
T  8416822 tacatttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctttctct 8416897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 348 - 398
Target Start/End: Original strand, 8405747 - 8405797
Alignment:
Q  348 tctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtatt 398  Q
    ||||||||| ||||| ||||| ||||||||||| ||||| |||||||||||    
T  8405747 tctatacatttcaaaaaccatgccaacttgtccaccatgttcaaaagtatt 8405797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 544 - 580
Target Start/End: Original strand, 8368314 - 8368350
Alignment:
Q  544 cctaatctctcataatcctcaatatcttttctcttca 580  Q
    ||||||||||||||||| || ||||||||||||||||    
T  8368314 cctaatctctcataatcttccatatcttttctcttca 8368350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 544 - 580
Target Start/End: Complemental strand, 8401096 - 8401060
Alignment:
Q  544 cctaatctctcataatcctcaatatcttttctcttca 580  Q
    ||||||||||||||||| || ||||||||||||||||    
T  8401096 cctaatctctcataatcttccatatcttttctcttca 8401060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 544 - 580
Target Start/End: Complemental strand, 8422673 - 8422637
Alignment:
Q  544 cctaatctctcataatcctcaatatcttttctcttca 580  Q
    ||||||||||||||||| || ||||||||||||||||    
T  8422673 cctaatctctcataatcttccatatcttttctcttca 8422637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 8e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 220 - 393
Target Start/End: Original strand, 55335978 - 55336151
Alignment:
Q  220 acacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctcttcaatagtttgttcaactgtctctt 319  Q
    ||||||||||| ||   |||||| || ||||| ||||| | |||||||||||||||||| | |||||||||||| ||||  ||   |||||   |||||     
T  55335978 acacttcttcctaacatcaatgccattttcatttcaaatatctcaccattttctcttttttccaaatctttctcctcaagtgtgctttcaatactctctc 55336077  T
Q  320 ccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaa 393  Q
    | || | || ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  55336078 caaacatcttaaaaaatccaccacagtttctatacatttcaaacaccataccaacttgtccaccatgctcaaaa 55336151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 190 - 394
Target Start/End: Original strand, 55330516 - 55330720
Alignment:
Q  190 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 289  Q
    |||||||| |||||||||||||||||    ||| ||||||||||   ||| || || ||||| ||||| | ||| |||||||||||  | |  |||||||    
T  55330516 gattttgaagcaagctctctcatctcagaaacatttcttcccaacatcaaagccattttcatttcaaataactctccattttctctcatctcaaaatctt 55330615  T
Q  290 tctcttcaatagtttgttcaactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctc 389  Q
    ||||||| |  ||||  ||||| ||||||||||| |||| ||  ||||||||||| ||||||||||| ||||| |||||||||| |||||| ||||| ||    
T  55330616 tctcttccaatgtttcatcaacagtctcttccaacagcttaaggaatccaccacaatttctatacatttcaaataccataccaatttgtccaccatgttc 55330715  T
Q  390 aaaag 394  Q
    |||||    
T  55330716 aaaag 55330720  T

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Target: scaffold1738 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1738
Description:

Target: scaffold1738; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 294
Target Start/End: Complemental strand, 129 - 25
Alignment:
Q  190 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 289  Q
    |||||||| ||||| || |||| |||   ||||||||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  |||||||    
T  129 gattttgatgcaagttccctcagctctgatacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctt 30  T
Q  290 tctct 294  Q
    |||||    
T  29 tctct 25  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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