View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2887-Insertion-8 (Length: 652)
Name: NF2887-Insertion-8
Description: NF2887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2887-Insertion-8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 629; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 8 - 652
Target Start/End: Complemental strand, 33368118 - 33367474
Alignment:
| Q |
8 |
tccataactaaagctctggttcactacgcctcctcctcgaactccaccaccaaatccatgtccttttcagaaatcaacgccataacaaccactcttcacc |
107 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33368118 |
tccataactaaagctctcgttcactacgcctcctcctcgaactccaccaccaaatccatgtccttttcagaaatcaacgccataacaaccactcttcacc |
33368019 |
T |
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| Q |
108 |
ttacaccaaaccccaacttccttatctttggtctcacccaagagtcccttctctggtctgcactgaataacaatggccgcactgttttcatcgatgaaaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33368018 |
ttacaccaaaccccaacttccttatctttggtctcacccaagagtcccttctctggtctgcactgaataacaatggtcgcactgttttcatcgatgaaaa |
33367919 |
T |
|
| Q |
208 |
cgaatatattatctcaaaattcgaacagtccaacccaggtatcgaagcttacgatgttcagttcacaagcaaagttagtgagtatccaaagttgctttct |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33367918 |
cgaatatattatctcaaaattcgaacagtccaacccaggtatcgaagcttacgatgttcagttcacaagcaaagttagtgagtatccaaagttgctttct |
33367819 |
T |
|
| Q |
308 |
catgcaaaagaagagtccaaacgtgatggtaagccggtacaaaatttgttattctcagaatgtaaactcggaatcaatgatatgccgaaccacatttacc |
407 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33367818 |
catgcaaaagaagagtccaaacgtgattgtaagccggtacaaaatttgttattctcagaatgtaaactcggaatcaatgatatgccgaaccacatttacc |
33367719 |
T |
|
| Q |
408 |
aagtctcttgggacgtgattctagttgatgggccaagagggtactttccggcagcttcagggagaatgtcggcaatatttactgcggcagtgttagctcg |
507 |
Q |
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| T |
33367718 |
aagtctcttgggacgtgattctagttgatgggccaagagggtactttccggcagctccagggagaatgtcggcaatatttactgcggcagtgttagctcg |
33367619 |
T |
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| Q |
508 |
tagcaagaaagtgggaaaaactcacgtttttgttcatgatttttggagagaagtggagaagattttcagctatgagtttctttgtgaagagaatttggtt |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33367618 |
tagcaagaaagtgggaaaaactcacgtttttgttcatgatttttggagagaagtggagaagattttcagctatgagtttctttgtgaagagaatttggtt |
33367519 |
T |
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| Q |
608 |
aacaatgtagatcagttaaggcattttgtgataaagagtgaaacc |
652 |
Q |
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| T |
33367518 |
aacaatgtagatcagttaaggcattttgtgataaagagtgaaacc |
33367474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 29 - 652
Target Start/End: Complemental strand, 33372298 - 33371675
Alignment:
| Q |
29 |
cactacgcctcctcctcgaactccaccaccaaatccatgtccttttcagaaatcaacgccataacaaccactcttcaccttacaccaaaccccaacttcc |
128 |
Q |
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||||| |||||||||| ||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
33372298 |
cactatgcctcctccttaaacaccaccaccaaatccatgtcctttgaagaaatcaacgctataacaaccactcttcaccttacaccacaccccaacttcc |
33372199 |
T |
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| Q |
129 |
ttatctttggtctcacccaagagtcccttctctggtctgcactgaataacaatggccgcactgttttcatcgatgaaaacgaatatattatctcaaaatt |
228 |
Q |
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| T |
33372198 |
tcatctttggtctcacccatgagtcacttctctggtctgcactaaaccaaaatggccgcactgttttcatcgacgaaaacgaatacatgatctcaaaatt |
33372099 |
T |
|
| Q |
229 |
cgaacagtccaacccaggtatcgaagcttacgatgttcagttcacaagcaaagttagtgagtatccaaagttgctttctcatgcaaaagaagagtccaaa |
328 |
Q |
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| T |
33372098 |
tgaacagtccaacccaggaatagaagcttatgatgttcagttcacaaccaaagttagtgagtatcctaagcttctttctcatgcaaaagcaaagtctaaa |
33371999 |
T |
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| Q |
329 |
cgtgatggtaagccggtacaaaatttgttattctcagaatgtaaactcggaatcaatgatatgccgaaccacatttaccaagtctcttgggacgtgattc |
428 |
Q |
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| ||| |||| || || || ||||||||||||||||| ||||||||||||||||| ||| ||||||| ||||||||||||||||||||||| ||||||| |
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| T |
33371998 |
cacgattgtaaacctgtgcagaatttgttattctcagagtgtaaactcggaatcaacgatttgccgaatcacatttaccaagtctcttgggatgtgattc |
33371899 |
T |
|
| Q |
429 |
tagttgatgggccaagagggtactttccggcagcttcagggagaatgtcggcaatatttactgcggcagtgttagctcgtagcaagaaagtgggaaaaac |
528 |
Q |
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| ||||||||||||||||||||||||||||||||| | |||||||||||||| || ||||| || |||||||| ||| | ||||||||| |||||||||| |
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| T |
33371898 |
ttgttgatgggccaagagggtactttccggcagctccggggagaatgtcggcgatctttacagcagcagtgttggctaggagcaagaaaatgggaaaaac |
33371799 |
T |
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| Q |
529 |
tcacgtttttgttcatgatttttggagagaagtggagaagattttcagctatgagtttctttgtgaagagaatttggttaacaatgtagatcagttaagg |
628 |
Q |
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|||| | ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33371798 |
tcacatatttgttcatgattttggaagagaagtggagaagattttcagctatgagtttctttgtgaagagaatttggttaacaatgtagatcagttaggg |
33371699 |
T |
|
| Q |
629 |
cattttgtgataaagagtgaaacc |
652 |
Q |
| |
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||||||||| | |||||||||||| |
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| T |
33371698 |
cattttgtggtgaagagtgaaacc |
33371675 |
T |
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