View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2887R-Insertion-1 (Length: 965)
Name: NF2887R-Insertion-1
Description: NF2887R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2887R-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 431 - 921
Target Start/End: Complemental strand, 8402635 - 8402149
Alignment:
| Q |
431 |
tatcccaaattacccatgttcataggggatattggggaatcgaccattgaatacattgcaaaattctccacaaaaatatgggaatttgcaatggttaaaa |
530 |
Q |
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| T |
8402635 |
tatcccaaattacccatgttcataggggatattggggaatcgagcattgaatacattgcaaaattctccacaaaaatatgggaatttgcaatggttaaaa |
8402536 |
T |
|
| Q |
531 |
atgagtttatcacaggttctttaaccaagaatgcaatatcatggatcttctattcactcattgactcggttagaataatgcacctttcacaagcaattat |
630 |
Q |
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| T |
8402535 |
-tgagtttatcacaggttctttaaccaagaatgcaatatcatggctcttctattcactcattgactcggttagaat---gcacctttcacaagcaattat |
8402440 |
T |
|
| Q |
631 |
ttagaggcgacttaaagattacattggtggattagttaagtatnnnnnnnttagtaacgattttgccgacaattacctatagaggttaagacaaatgaaa |
730 |
Q |
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| T |
8402439 |
ttagaggcgacttacagattacattggtggattagttaaatataaaaaaattagtaacgattttgccgacaattacctatagaggtttagacaaatgaag |
8402340 |
T |
|
| Q |
731 |
agtaggtgcttcacacctatactagaactggaagttaccaaaacagttgttggtggtttaaatttttacattagagaaaattggttgaccaacatcttgt |
830 |
Q |
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| T |
8402339 |
agtatgagcttcacacctatactaaaactggaagttgccaaaacagttgttggtggtttaaatttttacattagagaaaattggttgaccaacatcttgt |
8402240 |
T |
|
| Q |
831 |
tgacttggcccaatttggagaaaaattggacaaatatcaacaacttggttgacttttaagtccattccagcataatgtcaacaatgtcgaa |
921 |
Q |
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| T |
8402239 |
tgacttagcccaatttggagaaaaattgaacaaatatcaacatcttggttgacttttaagtccatttcagcataatatcaacaatgtcgaa |
8402149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 9 - 372
Target Start/End: Complemental strand, 8403455 - 8403091
Alignment:
| Q |
9 |
gttagagaattgtataatgtactcccatttttctcataataaatacaatgggtacaaaaatgcttgatgaatatatattacaatgcttgatcaattttgg |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8403455 |
gttagagaattgtataatgtactcccatttttctcataataaatacaatgggtacgacaatgcttgatgaatatatataacaatgcttgatcaattttgg |
8403356 |
T |
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| Q |
109 |
ccacctagatggccagattgaaccaagtgttgggcgttgacacaacccggacagggaaatattctccatgatatgaacaaaaatgatgtatcctctaatt |
208 |
Q |
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| T |
8403355 |
ccacctagatggccagattgaaccaagtgttgggcgttgacgcaacccggatagggaaatattctccatgatatgaac-aaaatgatgtatcccctaatt |
8403257 |
T |
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| Q |
209 |
aac--aaaaaatgtcatattcacatgaatcttggaaatgttaatgagcaaaagggacaaatgaatagcggcatggttcaaacatagttctaaaatgataa |
306 |
Q |
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| T |
8403256 |
aacaaaaaaaatgccatattcacatgaatcttggaaatgttaatgagcaaaagggacaaatgaatagcggcatggttcaaacatagttctaaaatgataa |
8403157 |
T |
|
| Q |
307 |
tgttgacgataaacattatattttgcctgcattgcaatttgagaattttaattcattattgagcaa |
372 |
Q |
| |
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| T |
8403156 |
tgttgacgataaccattatcttttgcctccattgcaatttgagaattttaattcattattgagcaa |
8403091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 403 - 574
Target Start/End: Complemental strand, 8428796 - 8428626
Alignment:
| Q |
403 |
acatattgaagtcccaagaggcgctaaatatcccaaattacccatgttcataggggatattggggaatcgaccattgaatacattgcaaaattctccaca |
502 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||| || |||||||||||||||||||| |
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| T |
8428796 |
acatgttgaagtcccaagaggcgctaaatatcccaaattggccatgttcataggggatattggggaatcaatcattaaacacattgcaaaattctccaca |
8428697 |
T |
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| Q |
503 |
aaaatatgggaatttgcaatggttaaaaatgagtttatcacaggttctttaaccaagaatgcaatatcatgg |
574 |
Q |
| |
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| T |
8428696 |
aaaatatgggaatttgcaatagtt-aaaatgagtttatcccaagttctttaaccaagaatgcattctcatgg |
8428626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 10 - 352
Target Start/End: Complemental strand, 8429336 - 8428991
Alignment:
| Q |
10 |
ttagagaattgtataatgtactcccatttttctcataataaatacaatgggtacaaaaatgcttgatgaatatatattacaatgcttgatcaattttggc |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||| ||||||||| |||||| | |||||||| ||| ||| | || |||||||||| ||||||| |
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| T |
8429336 |
ttagagaattgtataatgtactcccatttttcttatagtaaatacaacgggtacgataatgcttgtggaaaataca--acgatgcttgatctgttttggc |
8429239 |
T |
|
| Q |
110 |
cacctagat-----ggccagattgaaccaagtgttgggcgttgacacaacccggacagggaaatattctccatgatatgaacaaaaatgatgtatcctct |
204 |
Q |
| |
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||||||||| || || ||||||||||||||| ||| ||||||||||| ||| ||||||| | |||||| |||| |||||| | || ||||| || |
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| T |
8429238 |
cacctagattaggtggtcacattgaaccaagtgttaggcattgacacaacctggatagggaaacactctccaggata---acaaaa-tcatttatcccct |
8429143 |
T |
|
| Q |
205 |
aattaacaaaaaatgtcatattca----catgaatcttggaaatgttaatgagcaaaagggacaaatgaatagcggcatggttcaaacatagttctaaaa |
300 |
Q |
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|||| || ||||||| |||||||| |||||||||||| |||||||||||||| | | ||||||||||||||| |||||||||||||||||||||||| |
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| T |
8429142 |
aattgacgaaaaatgccatattcatatgcatgaatcttgggaatgttaatgagcataggagacaaatgaatagcgacatggttcaaacatagttctaaaa |
8429043 |
T |
|
| Q |
301 |
tgataatgttgacgataaacattatattttgcctgcattgcaatttgagaat |
352 |
Q |
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|| ||| | ||| ||| |||||| |||||| ||||||||| ||||||| |
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| T |
8429042 |
tgccaatctcgacattaaccattatcgtttgccaccattgcaatatgagaat |
8428991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 780 - 855
Target Start/End: Complemental strand, 8427991 - 8427915
Alignment:
| Q |
780 |
ttggtggtttaaatttttacattagagaaaa-ttggttgaccaacatcttgttgacttggcccaatttggagaaaaa |
855 |
Q |
| |
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||||||||||| ||||||||||||||||||| ||||| | ||||||||||||||||||| |||||| ||||||||| |
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| T |
8427991 |
ttggtggtttagatttttacattagagaaaaattggtcaatcaacatcttgttgacttggtccaattaggagaaaaa |
8427915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 723
Target Start/End: Complemental strand, 8428047 - 8428008
Alignment:
| Q |
684 |
gtaacgattttgccgacaattacctatagaggttaagaca |
723 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| ||||| |
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| T |
8428047 |
gtaacgattttgccgacaattacctataaaggtttagaca |
8428008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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