View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2887R-Insertion-2 (Length: 965)
Name: NF2887R-Insertion-2
Description: NF2887R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2887R-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 704; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 704; E-Value: 0
Query Start/End: Original strand, 9 - 894
Target Start/End: Complemental strand, 40583203 - 40582339
Alignment:
| Q |
9 |
gattgaaaagcagaggaagccaatttatgaacttaaggaaacaatattccaaaatgttttcaagaaaataagttggaacccatttggaaaaggatccata |
108 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40583203 |
gattgaaaagcagaggaaaccaatttatgaacttaaggaaacaatattccaaaatgttttcaagaaaataagttggaacccatttggaaaaggatccata |
40583104 |
T |
|
| Q |
109 |
tatgaattcatcgatataagagctgacttgacctctttgaagacttgggttaaggcaaagagagtcgtaaagatcagcgctgatatgaggaaagttcgag |
208 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40583103 |
tatgaattcatcgataaaagagctgacttgacctctttgaggacttgggttaaggcaaagagagtcgtaaagatcagcgctgatatgaggaaagttcgag |
40583004 |
T |
|
| Q |
209 |
aactggatgctagcaaaactagttgatcccttgtcttgaaataagctcccaaaggattgacaaagatcgacaaagatattgtattcttattctcaaattt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40583003 |
aactggatgctagcaaaactagttgatcccttgtcttgaaataagctcccaaaggattgacaaagat----------attgtattcttattctcaaattt |
40582914 |
T |
|
| Q |
309 |
aactcaattctctcttgatttttgataccataacatcttgtcttgagccaaaaccttgttatactcatttggcaaatgtctttcaaaattgacaagatca |
408 |
Q |
| |
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||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40582913 |
aacccaattctctcttgattttttataccataacatcttgtcttgagccaaaaccttgttatactcatttggcaaatgtctttcaaaattgacaagatca |
40582814 |
T |
|
| Q |
409 |
gaagattgacaataatcaagttgttgatgcattcgttccatcctagtctccaactgtcttttatttttataatgttgccaaagatatcaggattaaatct |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40582813 |
gaagattgacaataatcaagttgttgatgcattccttccatcctagcctccaactgtcttttatttttataatgttgccaaagatatcaggattaaatct |
40582714 |
T |
|
| Q |
509 |
ctctgaagatttgtggactgccttaagcttagagattgcattaacaacaatgtcactctattgaactaaaggtagccacatccactagacatctatcaag |
608 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
40582713 |
ctctgaagatttgtggactgc------------------attaacaacaatgtcactctattgaactaaaggtagccacatctactagacatctatcaag |
40582632 |
T |
|
| Q |
609 |
cttttcatgaatatctccaccatattgagaacttttcctccaactaaagatgccaccaattgtgtctaagtctacgaccccacaagcatcaaacatctga |
708 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40582631 |
cttttcatgaatatctccaccatattgagaacttttcctccaactaaagatgccaccaattgtgtctaagtctacgaccccacaagcatcaaacatctga |
40582532 |
T |
|
| Q |
709 |
gagacaagattgtcctcagacaaattgaagttcccaccagatatttttatgcaattgggaaccttgttaaaatcaccaatcatgatccaaggaccgaaat |
808 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40582531 |
gagacaagattgtcctcagacaaattgaagttcccaccagatatttttatgcaattgcgaaccttgttaaaatcaccaatcatgatccaaggaccgaaat |
40582432 |
T |
|
| Q |
809 |
tgcattcctaaatttac-aca-cgttat-atgaagatagaat-acatcaaattccaagtagtagtatca--ttatcgggggta-gagtgttca |
894 |
Q |
| |
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||||||||||||||||| ||| |||||| ||||||||||||| ||||||||||||||| |||||||||| | |||||||||| ||||||||| |
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| T |
40582431 |
tgcattcctaaatttacaacaccgttataatgaagatagaataacatcaaattccaaggagtagtatcaattaatcgggggtaggagtgttca |
40582339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 287 - 544
Target Start/End: Complemental strand, 54872619 - 54872361
Alignment:
| Q |
287 |
ttgtattcttattctcaaatttaactcaattctctcttgatttttgataccataacatcttgtcttgagccaaaaccttgttatactcatttggcaaatg |
386 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||| ||||||| |
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| T |
54872619 |
ttgtattcttattttcaaatttaatccaattctctcttgacttttgataccacaacatcttctcttgagccaagaccttgttatactcattttgcaaatg |
54872520 |
T |
|
| Q |
387 |
tctttcaaaattgacaagatcagaagattgacaataatcaagttgttgatgcattcgttccatcctagtctccaactgtcttttattttt-ataatgttg |
485 |
Q |
| |
|
||||||||||||| ||||||||| || ||||||||||||||||||||||||| || || ||| | | ||||| |||||||||||||| | ||| || |
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|
| T |
54872519 |
cctttcaaaattgataagatcagaggactgacaataatcaagttgttgatgcactcctttgatcattgcttccaattgtcttttatttttaaaaatatta |
54872420 |
T |
|
| Q |
486 |
ccaaagatatcaggattaaatctctctgaagatttgtggactgccttaagcttagagat |
544 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| || ||||| || | ||||||||||| |
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|
| T |
54872419 |
ccaaagatatcaaaattaaatctctcagaagacttttggaccgcttggagcttagagat |
54872361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 54872988 - 54872794
Alignment:
| Q |
10 |
attgaaaagcagaggaagccaatttatgaactta--aggaaacaatattccaaaatgttttcaagaaaataagttggaacccatttggaaaaggatccat |
107 |
Q |
| |
|
|||||||||||| |||| |||| ||||||||||| ||||||||||||||||||| ||||| ||||||||| |||| ||||||| | || |||| || | |
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|
| T |
54872988 |
attgaaaagcagtggaaaccaagttatgaacttatgaggaaacaatattccaaaaagttttaaagaaaataggttgaaacccatcttgaccaggagcctt |
54872889 |
T |
|
| Q |
108 |
atatgaattcatcgatataagagctgacttgacctctttgaagacttgggttaaggcaaagagagtcgtaaagatcagcgctgatatgaggaaagt |
203 |
Q |
| |
|
||| ||||||||||| | ||||| |||||||||| || |||||||||||| ||||||||||| | ||||||||| || ||||||||||||| |
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| T |
54872888 |
ataagaattcatcgaaaaaagagaaaacttgacctc-ttcaagacttgggttcaggcaaagagaattataaagatcaatactaatatgaggaaagt |
54872794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 2e-61; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 287 - 558
Target Start/End: Complemental strand, 7019767 - 7019496
Alignment:
| Q |
287 |
ttgtattcttattctcaaatttaactcaattctctcttgatttttgataccataacatcttgtcttgagccaaaaccttgttatactcatttggcaaatg |
386 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||| || ||||||||||| ||||| | ||||||||||| || ||||||||||||||| |||||| |
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|
| T |
7019767 |
ttgtattcttatttccaaatttaacccaattctctctcgacttttgataccacaacatatcctcttgagccaagac-ttgttatactcatttttcaaatg |
7019669 |
T |
|
| Q |
387 |
tctttcaaaattgacaagatcagaagattgacaataatcaagttgttgatgcattcgttccatcctagtctccaactgtcttttattttt-ataatgttg |
485 |
Q |
| |
|
||||| |||||||| |||||||||||| ||||||||||||||||||||||||| || || |||||| |||||| |||||||||||||| | |||||| |
|
|
| T |
7019668 |
tcttttaaaattgataagatcagaagactgacaataatcaagttgttgatgcactcctttaatcctaacctccaattgtcttttatttttaaaaatgtta |
7019569 |
T |
|
| Q |
486 |
ccaaagatatcaggattaaatctctctgaagatttgtggactgccttaagcttagagattgcattaacaacaa |
558 |
Q |
| |
|
||||||||||||| ||||||||| |||||||| || ||||| || | |||||||||||| ||||| |||||| |
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|
| T |
7019568 |
ccaaagatatcagaattaaatctttctgaagacttttggaccgcttgaagcttagagatcacattaccaacaa |
7019496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 7020137 - 7019942
Alignment:
| Q |
9 |
gattgaaaagcagaggaagccaatttatgaactta--aggaaacaatattccaaaatgttttcaagaaaataagttggaacccatttggaaaaggatcca |
106 |
Q |
| |
|
||||||||||||| |||| |||| |||||||||| ||||||| ||||||||||||||||| ||||||||| |||||||||||| |||| |||| || |
|
|
| T |
7020137 |
gattgaaaagcagtggaaaccaagttatgaacttctgaggaaacgatattccaaaatgttttgaagaaaataggttggaacccatctggaccaggagcct |
7020038 |
T |
|
| Q |
107 |
tatatgaattcatcgatataagagctgacttgacctctttgaagacttgggttaaggcaaagagagtcgtaaagatcagcgctgatatgaggaaagt |
203 |
Q |
| |
|
|||| |||||||| || | |||||| ||||||||||| || |||||||||||| |||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
7020037 |
tataagaattcattgagaaaagagcagacttgacctc-ttcaagacttgggttcaggcaaagagagtcgtaaagatcaatactaatatgaggaaagt |
7019942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 37786070 - 37786113
Alignment:
| Q |
44 |
aggaaacaatattccaaaatgttttcaagaaaataagttggaac |
87 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37786070 |
aggaaacaatattccaaaatgttttgaagaaaataagttggaac |
37786113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 302 - 344
Target Start/End: Original strand, 46785379 - 46785421
Alignment:
| Q |
302 |
caaatttaactcaattctctcttgatttttgataccataacat |
344 |
Q |
| |
|
|||||||||| |||||||| || |||||||||||||||||||| |
|
|
| T |
46785379 |
caaatttaacccaattctccctagatttttgataccataacat |
46785421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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