View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2887R-Insertion-3 (Length: 930)

Name: NF2887R-Insertion-3
Description: NF2887R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2887R-Insertion-3
NF2887R-Insertion-3
[»] chr7 (12 HSPs)
chr7 (607-930)||(32088403-32088728)
chr7 (8-253)||(32089516-32089761)
chr7 (423-604)||(32089334-32089515)
chr7 (8-193)||(32095476-32095661)
chr7 (441-604)||(32087979-32088142)
chr7 (463-604)||(32093091-32093232)
chr7 (231-354)||(32095354-32095477)
chr7 (507-604)||(32096807-32096904)
chr7 (441-577)||(32095035-32095174)
chr7 (397-440)||(32088252-32088295)
chr7 (572-604)||(41812156-41812188)
chr7 (574-604)||(41706698-41706728)
[»] chr4 (1 HSPs)
chr4 (841-879)||(51795915-51795953)
[»] chr8 (1 HSPs)
chr8 (571-604)||(21634875-21634908)
[»] chr3 (2 HSPs)
chr3 (572-604)||(48837982-48838014)
chr3 (573-604)||(38044590-38044621)
[»] chr6 (1 HSPs)
chr6 (573-604)||(26217303-26217334)
[»] chr1 (1 HSPs)
chr1 (575-604)||(31142017-31142046)


Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-162; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 607 - 930
Target Start/End: Complemental strand, 32088728 - 32088403
Alignment:
Q  607 accatcaggttcacctactttccattctttgctgaaagtattgggtttcttggcgtctggttttgtccaactagaagaattttatttccaggattatatt 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32088728 accatcaggttcacctactttccattctttgctgaaagtattgggtttcttggcgtctggttttgtccaactagaagaattttatttccaggattatatt 32088629  T
Q  707 ttatttgagatttggcacctgatatggtgtcatttaagctgcgtggcttaaatcctcgagttcttggacgctgaacttggaatacttgtgctgcgaaaag 806  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32088628 ttatttgagatttggcacctgatatgatgtcatttatgctgcgtggcttaaatcctcgagttcttggacgctgaacttggaatacttgtgctgtgaaaag 32088529  T
Q  807 gatagtggagttagcaattatttgcatttcagggaaaagggtcaactttttgttgattctattggatattagttgagag-tgagactatgttgta-gctg 904  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  32088528 gatagtggagttagcgattagttgcatttcagggaaaagggtcaactttttgttgattctattggatattagttgagagttgagactatgttgtaggctg 32088429  T
Q  905 gagatttttcaactccgtgtttgttt 930  Q
    ||||||||||||||||||||||||||    
T  32088428 gagatttttcaactccgtgtttgttt 32088403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 32089761 - 32089516
Alignment:
Q  8 aagatgaagactcttatggatgcgtaagattttgttttagtggatatttaatcttttaacttgcttaaaaattaactgcagcactaagcatcgagtaaga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32089761 aagatgaagactcttatggatgcgtaagattttgttttagtggatatttaatcttttaacttgcttaaaaattaactgcagcactaagcatcgagtaaga 32089662  T
Q  108 cacaaattgtgagtgaatcattatgaaaaatagggaaagggacactccagctttagtttaaatagaggatcacactcttgtatcctgtgtggcaaagcaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32089661 cacaaattgtgagtgaatcattatgaaaaatagggaaagggacactccagctttagtttaaatagaggatcacactcttgtatcctgtgtggcaaagcaa 32089562  T
Q  208 cataaatcctttcccttaacatactttggctctctttatagaaatc 253  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||    
T  32089561 cataaaccctttcccttaacatactttggctctctttataggaatc 32089516  T

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Target: chr7; HSP #3
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 423 - 604
Target Start/End: Complemental strand, 32089515 - 32089334
Alignment:
Q  423 gatatccgttatagtgatatctgaatcgcttgcttgcctcaggtgaaggttgagaaggatttgcatgttactgttacacttgctttttagtcccacattg 522  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  32089515 gatatccgttatagtgatatctgaatcgcttgcttgcctcaggtgaaagttgagaaggatttgcatgtaactgttacacttgctttttagtcccacatcg 32089416  T
Q  523 actgaaatagaaaatattttggcgtttatatagagcaagcaaaccataaggcttgtcccttcggggacatccgataaaattg 604  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32089415 actgaaatagaaaatattttggcgtatatatagagcaagcaaaccataaggcttgtcccttcggggacatccgataaaattg 32089334  T

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Target: chr7; HSP #4
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 32095661 - 32095476
Alignment:
Q  8 aagatgaagactcttatggatgcgtaagattttgttttagtggatatttaatcttttaacttgcttaaaaattaactgcagcactaagcatcgagtaaga 107  Q
    |||| ||||||||||||| ||| ||||||||||||||||||| |||||||||||| ||||||||||||||||| | || |||||||||||| ||||||||    
T  32095661 aagacgaagactcttatgaatgtgtaagattttgttttagtgaatatttaatcttgtaacttgcttaaaaattgagtggagcactaagcattgagtaaga 32095562  T
Q  108 cacaaattgtgagtgaatcattatgaaaaatagggaaagggacactccagctttagtttaaatagaggatcacactcttgtatcct 193  Q
    ||||| ||||||| |||||| ||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  32095561 cacaagttgtgagcgaatcagtatgaaaaataggcaaagggactctccagctttagtataaatagaggatcacactcttgtatcct 32095476  T

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Target: chr7; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 441 - 604
Target Start/End: Complemental strand, 32088142 - 32087979
Alignment:
Q  441 atctgaatcgcttgcttgcctcaggtgaaggttgagaaggatttgcatgttactgttacacttgctttttagtcccacattgactgaaatagaaaatatt 540  Q
    |||||| |||||||||||| ||||||||| |||||||||||| ||||| ||||| |||||||||| |||||||||||||| | |||||| ||||||||||    
T  32088142 atctgagtcgcttgcttgcttcaggtgaaagttgagaaggatatgcatattactattacacttgccttttagtcccacatcggctgaaacagaaaatatt 32088043  T
Q  541 ttggcgtttatatagagcaagcaaaccataaggcttgtcccttcggggacatccgataaaattg 604  Q
    || || |||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||    
T  32088042 ttagcatttatatagagcaagcgaaccgtaaggcttgtcccttcggggacatctgataaaattg 32087979  T

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Target: chr7; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 463 - 604
Target Start/End: Complemental strand, 32093232 - 32093091
Alignment:
Q  463 aggtgaaggttgagaaggatttgcatgttactgttacacttgctttttagtcccacattgactgaaatagaaaatattttggcgtttatatagagcaagc 562  Q
    ||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||| | |||||| |||||||||||  ||||||| |||   |||||    
T  32093232 aggtgaaagtcgagaaggatttgcatgttactattacacttgctttttagtcccacatcgtctgaaacagaaaatatttcagcgtttaaatacttcaagc 32093133  T
Q  563 aaaccataaggcttgtcccttcggggacatccgataaaattg 604  Q
     |||||  ||||||||||||||||||||||||||||||||||    
T  32093132 gaaccagtaggcttgtcccttcggggacatccgataaaattg 32093091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 231 - 354
Target Start/End: Complemental strand, 32095477 - 32095354
Alignment:
Q  231 ctttggctctctttatagaaatcttgctgtctggagaccatgctttcacgttgttaattaatttactccgtttgatgaatctctgaattgcatctttctc 330  Q
    |||||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||| || || |||||||| ||||||||||||||||||     
T  32095477 ctttggttctctttatagaaatcttgctgtgtagaggccatgctttcacgttgttaattaatttattctgtctgatgaatatctgaattgcatctttctg 32095378  T
Q  331 ttgaaataaaaatttgtgcgaaat 354  Q
    ||||| |||| |||| || |||||    
T  32095377 ttgaattaaagatttctgtgaaat 32095354  T

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Target: chr7; HSP #8
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 507 - 604
Target Start/End: Complemental strand, 32096904 - 32096807
Alignment:
Q  507 ttttagtcccacattgactgaaatagaaaatattttggcgtttatatagagcaagcaaaccataaggcttgtcccttcggggacatccgataaaattg 604  Q
    |||||||||||||| |||||||| ||||||||| | ||||||||||||  |||||| |||||||| | ||||||||||||||||||||||||||||||    
T  32096904 ttttagtcccacatcgactgaaacagaaaatatctaggcgtttatatactgcaagcgaaccataatgtttgtcccttcggggacatccgataaaattg 32096807  T

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Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 441 - 577
Target Start/End: Complemental strand, 32095174 - 32095035
Alignment:
Q  441 atctgaatcgcttgcttgcctcaggtgaaggttgagaaggatttgcatgttac---tgttacacttgctttttagtcccacattgactgaaatagaaaat 537  Q
    |||||| |||||||||||| ||||||| | |||||| ||||| ||||||||||   | ||| ||||||||||||||| ||||| |||||| | | |||||    
T  32095174 atctgagtcgcttgcttgcttcaggtgtaagttgaggaggatgtgcatgttactattattatacttgctttttagtcacacatcgactgacacaaaaaat 32095075  T
Q  538 attttggcgtttatatagagcaagcaaaccataaggcttg 577  Q
    || |   || |||||||  |||||| ||||| ||||||||    
T  32095074 atctcaacgattatatactgcaagcgaaccaaaaggcttg 32095035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 32088295 - 32088252
Alignment:
Q  397 gtgtggttacttgacaacaggaaattgatatccgttatagtgat 440  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||    
T  32088295 gtgtggttacttgacaacagggaatcgatatccgttatagtgat 32088252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 572 - 604
Target Start/End: Original strand, 41812156 - 41812188
Alignment:
Q  572 ggcttgtcccttcggggacatccgataaaattg 604  Q
    |||||||||||||||||||||||||||||||||    
T  41812156 ggcttgtcccttcggggacatccgataaaattg 41812188  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 574 - 604
Target Start/End: Complemental strand, 41706728 - 41706698
Alignment:
Q  574 cttgtcccttcggggacatccgataaaattg 604  Q
    |||||||||||||||||||||||||||||||    
T  41706728 cttgtcccttcggggacatccgataaaattg 41706698  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 841 - 879
Target Start/End: Original strand, 51795915 - 51795953
Alignment:
Q  841 aaaagggtcaactttttgttgattctattggatattagt 879  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  51795915 aaaagggtcatctttttgttgattctattggatattagt 51795953  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 571 - 604
Target Start/End: Complemental strand, 21634908 - 21634875
Alignment:
Q  571 aggcttgtcccttcggggacatccgataaaattg 604  Q
    ||||||||||||||||||||||||||||||||||    
T  21634908 aggcttgtcccttcggggacatccgataaaattg 21634875  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 572 - 604
Target Start/End: Original strand, 48837982 - 48838014
Alignment:
Q  572 ggcttgtcccttcggggacatccgataaaattg 604  Q
    |||||||||||||||||||||||||||||||||    
T  48837982 ggcttgtcccttcggggacatccgataaaattg 48838014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 573 - 604
Target Start/End: Complemental strand, 38044621 - 38044590
Alignment:
Q  573 gcttgtcccttcggggacatccgataaaattg 604  Q
    ||||||||||||||||||||||||||||||||    
T  38044621 gcttgtcccttcggggacatccgataaaattg 38044590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 573 - 604
Target Start/End: Complemental strand, 26217334 - 26217303
Alignment:
Q  573 gcttgtcccttcggggacatccgataaaattg 604  Q
    ||||||||||||||||||||||||||||||||    
T  26217334 gcttgtcccttcggggacatccgataaaattg 26217303  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 575 - 604
Target Start/End: Complemental strand, 31142046 - 31142017
Alignment:
Q  575 ttgtcccttcggggacatccgataaaattg 604  Q
    ||||||||||||||||||||||||||||||    
T  31142046 ttgtcccttcggggacatccgataaaattg 31142017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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