View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2887R-Insertion-4 (Length: 890)
Name: NF2887R-Insertion-4
Description: NF2887R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2887R-Insertion-4 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 539; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 8 - 821
Target Start/End: Complemental strand, 961682 - 960875
Alignment:
| Q |
8 |
aaaaaacttaagaaaccaagttatgtagcatttgtgatttaagtggctaaaataaaatgnnnnnnnctcggggtctagtggtttttcactaacacttata |
107 |
Q |
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| T |
961682 |
aaaaaacttaagaaaccaagttatgtagcatttgtaatttaagtggctaaaataaaatgaaaaaaactcggggtctagtggtttttcactaacacttata |
961583 |
T |
|
| Q |
108 |
ggaatatttacttttgt--caatctttcaataatttgttctccttttgggcttttctcatccttcatataacaacaaaatac--------------agtg |
191 |
Q |
| |
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| T |
961582 |
ggaatatttacttttgtgtcaatctttcaataatttgttctccttttgggcttttctcatccttcatataacaacaaaatacgtgaaggaaagtacagtg |
961483 |
T |
|
| Q |
192 |
aaagaattaaacttggggcaaaaatattcgaatttccctttcattgatatatatattacatgttccttgactatattgaaaatgaaaatggttttctttg |
291 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
961482 |
aaagaattaaacttggggcaaaaatattcaaatttccctttcattgatatatatattacatgttctttgactatattgaaaatgaaaatggttttgtttg |
961383 |
T |
|
| Q |
292 |
ttttggaaacaaaggctgtttcaaagtagaatatgcaaaagtataggcaggcacgtatggtacgcggagtannnnnnncttcttcttatgacaatcaagt |
391 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
961382 |
ttttggaaacaaaggctgtttcaaaatagaatatgcaaaagtataggcaggcacgtatggtacgcggagtatttttt--ttcttcttatgacaatcaatt |
961285 |
T |
|
| Q |
392 |
tttatgtgtagtttcattaatgtaacaacaaagattcttttttaagggatcattgttatcaaagataaactcttcatgtcttcaaaggttggtcaaagca |
491 |
Q |
| |
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| T |
961284 |
tttatgtgtagtttcatt---gtaacaacaaagattctt---------atcattgctatcaaagataaactcttcatgtcttcaaaagttggtcaaagaa |
961197 |
T |
|
| Q |
492 |
gcaaatgactgcttgtatttttggatgagcatgtcaaaattacggcgatacgataattttggagagtcaacaaaacatagtttttgtcgaaattgtagtg |
591 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
961196 |
gcaaatgactgcttgtatttttggatgagcatgtcaaaattacggtgatactataattttggagagtcaacaaaacatagtttttgtcgaaattacagtg |
961097 |
T |
|
| Q |
592 |
gctcatcataattctaattgttcaattgtcaaattcaaacatgtttataactagattatggagataaaatataatccttcttgtatattttcattttcat |
691 |
Q |
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| ||| |||||| ||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
961096 |
gttcactataattttaattgtccaattgtc-aattcaaacatg-ttataactagattatggagataaaatataatccttcttgtatattttcattttcat |
960999 |
T |
|
| Q |
692 |
aaatatacaaaagagtgaaataaaatataatgcaaaaggattcggattgagtgacttttatgggaggaaaagtttaccaccatatatttgtctctctgtg |
791 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| |||||||||| |||| |
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| T |
960998 |
aaatatacaaaagagtgaaataaaatataatgcaaaaggattcggattgagtgac-tttat-ggaggaaaagtt----accataaatttgtctctatgtg |
960905 |
T |
|
| Q |
792 |
ttatcttaactatcatttctcttttatctt |
821 |
Q |
| |
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| |||||||||||||||||||||| ||||| |
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| T |
960904 |
tcatcttaactatcatttctctttcatctt |
960875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 792 - 868
Target Start/End: Complemental strand, 960876 - 960801
Alignment:
| Q |
792 |
ttatcttaactatcatttctcttttatctttccctattataaaatattgaaaaattacactaaaatcaatataattt |
868 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
960876 |
ttatcttaactatcatttctcttttatctttctctattataaaatattgaaaaa-tacactaaaatcaatataattt |
960801 |
T |
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