View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2887R-Insertion-6 (Length: 623)

Name: NF2887R-Insertion-6
Description: NF2887R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2887R-Insertion-6
NF2887R-Insertion-6
[»] chr5 (2 HSPs)
chr5 (429-514)||(17088412-17088495)
chr5 (404-436)||(17088219-17088251)
[»] chr8 (1 HSPs)
chr8 (383-511)||(29268973-29269102)
[»] chr6 (2 HSPs)
chr6 (29-95)||(27659372-27659438)
chr6 (29-95)||(25080379-25080446)
[»] chr4 (1 HSPs)
chr4 (406-473)||(5103760-5103828)


Alignment Details
Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 429 - 514
Target Start/End: Original strand, 17088412 - 17088495
Alignment:
Q  429 ccatatatgactatttttatgtggaaataatggctcaaaggcatgcacttttagtcaatggataactgtgatttccatgatctatg 514  Q
    |||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||    
T  17088412 ccatatatgaatatttttatgtggaaataatggctcaaag-ca-gcacttttagtcaatggataactgtgatttgcatgatctatg 17088495  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 404 - 436
Target Start/End: Original strand, 17088219 - 17088251
Alignment:
Q  404 acattcatattttggtccacaatgtccatatat 436  Q
    ||||||||||||| |||||||||||||||||||    
T  17088219 acattcatatttttgtccacaatgtccatatat 17088251  T

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Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 383 - 511
Target Start/End: Complemental strand, 29269102 - 29268973
Alignment:
Q  383 actgtaagcaattcacttataacattcatattttgg-tccacaatgtccatatatgactatttttatgtggaaataatggctcaaaggcatgcactttta 481  Q
    |||||||||| ||||||||||||||||| ||||| | |||| ||||| ||| ||    | |||||||||||||||||||||||||||| |||||||||||    
T  29269102 actgtaagcacttcacttataacattcaaatttttgatccataatgttcatttacacttctttttatgtggaaataatggctcaaaggaatgcactttta 29269003  T
Q  482 gtcaatggataactgtgatttccatgatct 511  Q
    |||| ||| | ||||| ||| |||||||||    
T  29269002 gtcattggcttactgtaattaccatgatct 29268973  T

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Target: chr6 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 27659438 - 27659372
Alignment:
Q  29 tctttgttgtgttgtaaataaatcccttctataactgaaaaagtagtcaatttgtcagtcaatggct 95  Q
    ||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  27659438 tctttgtggtgttgtaaagaaatcccttgtataactgaaaaagtagtcaatttgtctgtcaatggct 27659372  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 25080379 - 25080446
Alignment:
Q  29 tctttgttgtgttgtaaataaatcccttctataactg-aaaaagtagtcaatttgtcagtcaatggct 95  Q
    ||||||| |||| ||||| |||||||||||| ||||| |||||||||| |||||||| ||||||||||    
T  25080379 tctttgtggtgtcgtaaagaaatcccttctacaactgaaaaaagtagttaatttgtctgtcaatggct 25080446  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 406 - 473
Target Start/End: Original strand, 5103760 - 5103828
Alignment:
Q  406 attcatat-tttggtccacaatgtccatatatgactatttttatgtggaaataatggctcaaaggcatg 473  Q
    |||||||| |||| |||||||  ||||||||||| | | ||||||| ||||||||||||||||||||||    
T  5103760 attcatatatttgatccacaagttccatatatgattctatttatgttgaaataatggctcaaaggcatg 5103828  T

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