View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2887R-Insertion-8 (Length: 417)
Name: NF2887R-Insertion-8
Description: NF2887R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2887R-Insertion-8 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 281
Target Start/End: Complemental strand, 8880811 - 8880538
Alignment:
| Q |
8 |
atgatgatgagtggggttcagagccttctgccgatgtggcagttgcggaggtgatagtgccagaaagtgaaacggagaagctgaagaaggacttggttgg |
107 |
Q |
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| T |
8880811 |
atgatgatgagtggggttcagagccttctgccgatgtggcagttgcggaggtgatagtgccagaaagtgagacggagaagctgaagaaggacttggttgg |
8880712 |
T |
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| Q |
108 |
ttccttttatgggactgctcgtggattgaaagcggcgagtgagacaagagcggagatttttgagcttattagtcagcttgaggctaagaatccaaccccc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8880711 |
ttccttttatgggactgctcgtggattgaaagcggcgagtgagacaagagcggagatttttgagcttattagtcagctcgaggctaagaatccaaccccc |
8880612 |
T |
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| Q |
208 |
gcttccactgatgctttgagtttgctcgatggaaaatggattcttgcgtaagcaaattcgttttactaactttc |
281 |
Q |
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| T |
8880611 |
gcttccactgatgctttgagtttgctcgatggaaaatggattcttgcgtaagcaaattcgttttactaactttc |
8880538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 74 - 259
Target Start/End: Complemental strand, 8884847 - 8884662
Alignment:
| Q |
74 |
gtgaaacggagaagctgaagaaggacttggttggttccttttatgggactgctcgtggattgaaagcggcgagtgagacaagagcggagatttttgagct |
173 |
Q |
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|||| ||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||| ||||||| || ||||| |||||| ||||||| |
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| T |
8884847 |
gtgagacggagaagctgaagaaggcgttggttggttcgttttatgggactgatcgtggattgaaagcgacgagtgaaactagagctgagattgttgagct |
8884748 |
T |
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| Q |
174 |
tattagtcagcttgaggctaagaatccaacccccgcttccactgatgctttgagtttgctcgatggaaaatggattcttgcgtaag |
259 |
Q |
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| T |
8884747 |
tattactcagctggaagctaagaatcccacacctgcttccactgatgccttgagtttgctcaatggaaaatggattcttgcgtaag |
8884662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 349 - 414
Target Start/End: Complemental strand, 8880470 - 8880405
Alignment:
| Q |
349 |
ttgttagacaatgatttgtgtttggaagggaattctcatattctgcttattattaatgttaacttt |
414 |
Q |
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| T |
8880470 |
ttgttagacaatgatttgtgtttggaagggaattctcatattctgcttattattaatgttaacttt |
8880405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 8884923 - 8884873
Alignment:
| Q |
10 |
gatgatgagtggggttcagagccttctgccgatgtggcagttgcggaggtg |
60 |
Q |
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| T |
8884923 |
gatgatgagtggggtccagagccttctgctggtgtcgcggttgcggaggtg |
8884873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 281
Target Start/End: Complemental strand, 45073950 - 45073677
Alignment:
| Q |
8 |
atgatgatgagtggggttcagagccttctgccgatgtggcagttgcggaggtgatagtgccagaaagtgaaacggagaagctgaagaaggacttggttgg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||| ||||||||||||||||||||||||||||| |
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| T |
45073950 |
atgatgatgagtggggttcagagccttctgccgatgtggcagttgcggaggtgatagtgacagatattgagacggagaagctgaagaaggacttggttgg |
45073851 |
T |
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| Q |
108 |
ttccttttatgggactgctcgtggattgaaagcggcgagtgagacaagagcggagatttttgagcttattagtcagcttgaggctaagaatccaaccccc |
207 |
Q |
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|| ||||||||||||| || ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| |
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| T |
45073850 |
tttgttttatgggactgatcatggatcgaaagccgcgagtgagacaagagcggagatttttgagcttattagtcagctcgaggctaagtttcccacccct |
45073751 |
T |
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| Q |
208 |
gcttccactgatgctttgagtttgctcgatggaaaatggattcttgcgtaagcaaattcgttttactaactttc |
281 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45073750 |
gcttccactgatgccttgagtttgctcgatggaaaatggattctcgcgtaagcaaattcgttttactaactttc |
45073677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 413
Target Start/End: Complemental strand, 45073611 - 45073546
Alignment:
| Q |
349 |
ttgttagacaatgatttgtgtttggaagggaa-ttctcatattctgcttattattaatgttaactt |
413 |
Q |
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|||||||||||||||||||||||||||||||| || |||| |||||||||||||| | |||||||| |
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| T |
45073611 |
ttgttagacaatgatttgtgtttggaagggaacttatcatgttctgcttattattgacgttaactt |
45073546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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