View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2887_high_3 (Length: 434)
Name: NF2887_high_3
Description: NF2887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2887_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 16 - 415
Target Start/End: Original strand, 18538105 - 18538502
Alignment:
| Q |
16 |
atcatgtatgcacttaccaatatcagaggagacatataaactttttagattataattatttaaaatttaacccaatattttataaacttttagaattgac |
115 |
Q |
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| T |
18538105 |
atcatgtatgcacttaccaatgtcaga--agacatataaactttttagattataattatttaaaatttaacccaatattttataaacttttagaattgac |
18538202 |
T |
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| Q |
116 |
ttctaagaaaagaaaagaaaaacttaaattaatgcatgcactctaaatccactatgatccaagtacactacggaagataggtaaggaaaacctttcggtc |
215 |
Q |
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| T |
18538203 |
ttctaagaaaagaagagaaaaacttaaattaatgcatgcactctaaatccactatgatccaagtacactacggaagataggtaaggaaaacctttcggtc |
18538302 |
T |
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| Q |
216 |
gttatcattattagaaacttgatttcactcatcacttatcatgatcctcatgaaataaataagtagtttaatacacaggtatggcttttaattttggtca |
315 |
Q |
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| T |
18538303 |
gttatcattattagaaacttgatttcactcatcacttgtcatgatcctcatgaaataaataagtagtttaatacataggtatggcttttaattttggtca |
18538402 |
T |
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| Q |
316 |
gtcactatatgtcacatgttctgttgctattgtattattatttttctgctgcaaagaaaagtggagtcatctaagtggattaattaaagcttttcaccag |
415 |
Q |
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| T |
18538403 |
gtcactatatgtcacatgttctgttgctattgtattattatttttctgctgcaaagaaaagtggagtcatctaagtggattaattaaagcttttcaccag |
18538502 |
T |
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