View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2887_high_5 (Length: 321)
Name: NF2887_high_5
Description: NF2887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2887_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 2840940 - 2840637
Alignment:
| Q |
11 |
tatattgagaatgaatgacataaaaatgagccacaaagatttttcttccttggtggtaccacaaaagcaattaagggcctttttgttttaaaaaatatca |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2840940 |
tatattgagaatgaatgacataaaaatgagccacaaagatttttcttccttggtgttaccacaaaagcaattaagggcctttttgtttt----aatatca |
2840845 |
T |
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| Q |
111 |
atatatattttctgttcttacttggaatcacaaaaatgttatcttatttttgtatttataggtgggag-nnnnnnnnntgaaacaaacagaannnnnnnc |
209 |
Q |
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| T |
2840844 |
--atatattctctgttcttacttggaatcacaaaaatgttatcttatttttgtatttatagatgggagaaaaaaaaaatgaaacaaacagaatttttttc |
2840747 |
T |
|
| Q |
210 |
cttaaaccgaacaactccgagattttcactttgtctgctaactaaagagtagatgtcatgatatacctgcagtttctcttcatcttgttcatcaaacagt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2840746 |
cttaaaccgaacaactccgagattttcactttgtctgctaactaaagagtagatgtcatgatatacctgcagtttctcttcatcttgttcatcaaacagt |
2840647 |
T |
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| Q |
310 |
gcctttgctt |
319 |
Q |
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||||| |||| |
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| T |
2840646 |
gccttggctt |
2840637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 2845627 - 2845324
Alignment:
| Q |
11 |
tatattgagaatgaatgacataaaaatgagccacaaagatttttcttccttggtggtaccacaaaagcaattaagggcctttttgttttaaaaaatatca |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2845627 |
tatattgagaatgaatgacataaaaatgagccacaaagatttttcttccttggtgttaccacaaaagcaattaagggcctttttgtttt----aatatca |
2845532 |
T |
|
| Q |
111 |
atatatattttctgttcttacttggaatcacaaaaatgttatcttatttttgtatttataggtgggag-nnnnnnnnntgaaacaaacagaannnnnnnc |
209 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| | |
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| T |
2845531 |
--atatattctctgttcttacttggaatcacaaaaatgttatcttatttttgtatttatagatgggagaaaaaaaaaatgaaacaaacagaatttttttc |
2845434 |
T |
|
| Q |
210 |
cttaaaccgaacaactccgagattttcactttgtctgctaactaaagagtagatgtcatgatatacctgcagtttctcttcatcttgttcatcaaacagt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2845433 |
cttaaaccgaacaactccgagattttcactttgtctgctaactaaagagtagatgtcatgatatacctgcagtttctcttcatcttgttcatcaaacagt |
2845334 |
T |
|
| Q |
310 |
gcctttgctt |
319 |
Q |
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||||| |||| |
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| T |
2845333 |
gccttggctt |
2845324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 2832463 - 2832553
Alignment:
| Q |
7 |
aaaatatattgagaatgaatgacataaaaatgagccacaaagatttttcttccttggtggtaccacaaaagcaattaagggcctttttgtt |
97 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
2832463 |
aaaatatattgagaatgaatgacataaaaatgagccacgaagatttttcttccttggtggtaccacaaaggcaattaagggcatttttgtt |
2832553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 212 - 319
Target Start/End: Original strand, 2832642 - 2832750
Alignment:
| Q |
212 |
taaaccgaacaactccgagatttt-cactttgtctgctaactaaagagtagatgtcatgatatacctgcagtttctcttcatcttgttcatcaaacagtg |
310 |
Q |
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|||||||| ||| ||| ||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
2832642 |
taaaccgatcaagtcctagatttttcactttgtctgctaactaaagtgtagatgtcgtgatatacctgcagtttttcttcatcttgttcaccaaacagtg |
2832741 |
T |
|
| Q |
311 |
cctttgctt |
319 |
Q |
| |
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|||| |||| |
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| T |
2832742 |
ccttggctt |
2832750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 2832556 - 2832607
Alignment:
| Q |
123 |
tgttcttacttggaatcacaaaaatgttatcttatttttgtatttataggtg |
174 |
Q |
| |
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||||| ||||||||||||||||| ||| |||| ||||||||||||||||||| |
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| T |
2832556 |
tgttcatacttggaatcacaaaactgtcatctgatttttgtatttataggtg |
2832607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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