View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2887_low_1 (Length: 544)
Name: NF2887_low_1
Description: NF2887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2887_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 8403448 - 8403091
Alignment:
| Q |
1 |
aattgtataatgtactcccatttttctcataataaatacaatgggtacaaaaatgcttgatgaatatatattacaatgcttgatcaattttggccaccta |
100 |
Q |
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| T |
8403448 |
aattgtataatgtactcccatttttctcataataaatacaatgggtacgacaatgcttgatgaatatatataacaatgcttgatcaattttggccaccta |
8403349 |
T |
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| Q |
101 |
gatggccagattgaaccaagtgttgggcgttgacacaacccggacagggaaatattctccatgatatgaacaaaaatgatgtatcctctaattaac--aa |
198 |
Q |
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| T |
8403348 |
gatggccagattgaaccaagtgttgggcgttgacgcaacccggatagggaaatattctccatgatatgaac-aaaatgatgtatcccctaattaacaaaa |
8403250 |
T |
|
| Q |
199 |
aaaatgtcatattcacatgaatcttggaaatgttaatgagcaaaagggacaaatgaatagcggcatggttcaaacatagttctaaaatgataatgttgac |
298 |
Q |
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| T |
8403249 |
aaaatgccatattcacatgaatcttggaaatgttaatgagcaaaagggacaaatgaatagcggcatggttcaaacatagttctaaaatgataatgttgac |
8403150 |
T |
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| Q |
299 |
gataaacattatattttgcctgcattgcaatttgagaattttaattcattattgagcaa |
357 |
Q |
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| T |
8403149 |
gataaccattatcttttgcctccattgcaatttgagaattttaattcattattgagcaa |
8403091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 416 - 535
Target Start/End: Complemental strand, 8402635 - 8402517
Alignment:
| Q |
416 |
tatcccaaattacccatgttcataggggatattggggaatcgaccattgaatacattgcaaaattctccacaaaaatatgggaatttgcaatggttaaaa |
515 |
Q |
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| T |
8402635 |
tatcccaaattacccatgttcataggggatattggggaatcgagcattgaatacattgcaaaattctccacaaaaatatgggaatttgcaatggtt-aaa |
8402537 |
T |
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| Q |
516 |
atgagtttatcacaggttct |
535 |
Q |
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| T |
8402536 |
atgagtttatcacaggttct |
8402517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 388 - 535
Target Start/End: Complemental strand, 8428796 - 8428650
Alignment:
| Q |
388 |
acatattgaagtcccaagaggcgctaaatatcccaaattacccatgttcataggggatattggggaatcgaccattgaatacattgcaaaattctccaca |
487 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||| || |||||||||||||||||||| |
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| T |
8428796 |
acatgttgaagtcccaagaggcgctaaatatcccaaattggccatgttcataggggatattggggaatcaatcattaaacacattgcaaaattctccaca |
8428697 |
T |
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| Q |
488 |
aaaatatgggaatttgcaatggttaaaaatgagtttatcacaggttct |
535 |
Q |
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| T |
8428696 |
aaaatatgggaatttgcaatagtt-aaaatgagtttatcccaagttct |
8428650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 8429330 - 8428991
Alignment:
| Q |
1 |
aattgtataatgtactcccatttttctcataataaatacaatgggtacaaaaatgcttgatgaatatatattacaatgcttgatcaattttggccaccta |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||| |||||| | |||||||| ||| ||| | || |||||||||| ||||||||||||| |
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| T |
8429330 |
aattgtataatgtactcccatttttcttatagtaaatacaacgggtacgataatgcttgtggaaaataca--acgatgcttgatctgttttggccaccta |
8429233 |
T |
|
| Q |
101 |
gat-----ggccagattgaaccaagtgttgggcgttgacacaacccggacagggaaatattctccatgatatgaacaaaaatgatgtatcctctaattaa |
195 |
Q |
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||| || || ||||||||||||||| ||| ||||||||||| ||| ||||||| | |||||| |||| |||||| | || ||||| |||||| | |
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| T |
8429232 |
gattaggtggtcacattgaaccaagtgttaggcattgacacaacctggatagggaaacactctccaggata---acaaaa-tcatttatcccctaattga |
8429137 |
T |
|
| Q |
196 |
caaaaaatgtcatattca----catgaatcttggaaatgttaatgagcaaaagggacaaatgaatagcggcatggttcaaacatagttctaaaatgataa |
291 |
Q |
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| T |
8429136 |
cgaaaaatgccatattcatatgcatgaatcttgggaatgttaatgagcataggagacaaatgaatagcgacatggttcaaacatagttctaaaatgccaa |
8429037 |
T |
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| Q |
292 |
tgttgacgataaacattatattttgcctgcattgcaatttgagaat |
337 |
Q |
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| | ||| ||| |||||| |||||| ||||||||| ||||||| |
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| T |
8429036 |
tctcgacattaaccattatcgtttgccaccattgcaatatgagaat |
8428991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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