View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2887_low_4 (Length: 401)
Name: NF2887_low_4
Description: NF2887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2887_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 10 - 385
Target Start/End: Complemental strand, 43533134 - 43532758
Alignment:
| Q |
10 |
atcatcaagaaaatagaatgattcaagggaagaagatgaaggtgaaagtgatgatgaataagaggagaatgaagcggttcggcgagaagatggatactta |
109 |
Q |
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| T |
43533134 |
atcatcaagaaaatagaatgattcaagggaagaagatgaaggtgaaagtgatgatgaataagaggagaatgaagcggttcggcgagaagatggatactta |
43533035 |
T |
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| Q |
110 |
ccaggaaggaaggtttcacattgtgttggaacatccttggcatgatgtctgagatttggtgatgaatccattgttgtttgtaggaagtgaggaagaaaga |
209 |
Q |
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| T |
43533034 |
ccgggaaggaaggtttcacattgtgttggaacatccttggcatgatgtctgagatttggtgatgaatccattgttgtttgtaggaagtgaggaagaaaga |
43532935 |
T |
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| Q |
210 |
aaagatgagtgtttggttggtagatcacttggttttttgttcttta-accaggcccnnnnnnncttcacattttaatatatataagccaagggcatagag |
308 |
Q |
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| T |
43532934 |
aaagatgagtgtttggttggtagatcacttggttttttgttctttataccaggccctttttttcttcacattttaatatatataagccaagggcatagag |
43532835 |
T |
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| Q |
309 |
aaaaacaagggcacaagtcctattctaatatcttttgttatccctcgaggtatttagatctaggcatgacatgtttc |
385 |
Q |
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| T |
43532834 |
aaaaacaagggcacaagtcctattctaatatcttttgttatccctcgaggtatttagatctaggcatgacatgtttc |
43532758 |
T |
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