View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2887_low_6 (Length: 346)
Name: NF2887_low_6
Description: NF2887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2887_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 123; Significance: 4e-63; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 176 - 330
Target Start/End: Original strand, 40284572 - 40284725
Alignment:
| Q |
176 |
tatcaagtgtccagagatactgatccagatcaagaattcaagatcaaaccaaacaaacaaattctaaaaacaaaagggatgcacagaaaatataatgaat |
275 |
Q |
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| T |
40284572 |
tatcaagtgtccagagatactgatccagatcaagaattca-gatcaaaccaaacaaacaaattctaaaaacaaaagggatgcacagaaaatataatgaat |
40284670 |
T |
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| Q |
276 |
ttgtagtactctatgaaaggaacggtgagtttggttggagctgtttgcataaacc |
330 |
Q |
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| T |
40284671 |
ttgtagtactctatggaaggaaggatttgtttggttggagttgtttgcataaacc |
40284725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 40284450 - 40284542
Alignment:
| Q |
15 |
atatcaactactgagactgagagatgtactctattaatcaaagtaacaatgttcattagaataaaaatggatacgagcacgcatgaaagaatt |
107 |
Q |
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| T |
40284450 |
atatcaactactaagactgagagatgtactatattaatcaaagtaacaatgttcattaaaataaaaatggacacgagcacgcatgaaagaatt |
40284542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 40279707 - 40279764
Alignment:
| Q |
273 |
aatttgtagtactctatgaaaggaacggtgagtttggttggagctgtttgcataaacc |
330 |
Q |
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| T |
40279707 |
aatttgtagtactctatggaaggaagggcgtgtttggttggagctgtttgcataaacc |
40279764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 40458643 - 40458586
Alignment:
| Q |
273 |
aatttgtagtactctatgaaaggaacggtgagtttggttggagctgtttgcataaacc |
330 |
Q |
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| T |
40458643 |
aatttgtagtactctatggaaggaagggcgtgtttggttggagctgtttgcataaacc |
40458586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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