View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2888-Insertion-10 (Length: 754)

Name: NF2888-Insertion-10
Description: NF2888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2888-Insertion-10
NF2888-Insertion-10
[»] chr1 (2 HSPs)
chr1 (28-737)||(41659216-41659928)
chr1 (668-725)||(41658252-41658309)


Alignment Details
Target: chr1 (Bit Score: 596; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 28 - 737
Target Start/End: Complemental strand, 41659928 - 41659216
Alignment:
Q  28 caatgccacactacttactaaaatcaatgtctaaatcaatcccacaatagtaagatcaaattgatattaggcggttttgaattatttatacaaatgggga 127  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41659928 caatgccacactacttactaaaatcaatgtctaaatcaatgccacaatagtaagatcaaattgatattaggcggttttgaattatttatacaaatgggga 41659829  T
Q  128 aacccttggaagattgttaggtttttgacccatgacaatgttctcttttatttttcctaagaaaaccgctaaatctgactattttacaagcgtatc---- 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  41659828 aacccttggaagattgttaggtttttgacccatgacaatgttctcttttatttttcctaagaaaaccgctaaatctgactattttacaagcgtatcttag 41659729  T
Q  224 --------aggtcataaggtaggttttatttcagctagactttgaaatttagaaatttctttgaaagagtgagtg--ataattttgattttttgaagttg 313  Q
            | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||| |||||||    
T  41659728 agcatatcaagtcataaggtaggttttatttcagctagactttgaaatttagaaattcctttgaaagagtgagtgtgataattttgattttt-gaagttg 41659630  T
Q  314 aactctttattagtctttaacaccttaaagccttagacctttttatagtgattagttcaacattgtaacacaagtatccagttttgatagggataatcac 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41659629 aactctttattagtctttaacaccttaaagccttagacctttttatagtgattagttcaacattgtaacacaagtatccagtcttgatagggataatcac 41659530  T
Q  414 tgtgctattatgacaatagtaggctatatcatttctacatctatactatactctgtagttttcaccttcagacttgagagatttatggtcatgtttattg 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||| |||||||||||    
T  41659529 tgtgctattatgacaatagtaggctatatcatttctacatctatact-----ctgtagttttcaccttcagacttgagagatttatggccatgtttattg 41659435  T
Q  514 aattcttttgttcttctcaacttttcccgcttcttgttttcatgattttccaaatatttgattatgcgagattattattgaatcttggttatttttactt 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41659434 aattcttttgttcttctcaacttttcccgcttcttgttttcatgattttccaaatatttgattatgcgagattattattgaatcttggttatttttactt 41659335  T
Q  614 catattcaagtaaaataatacatagacttcaagaaatccatgaacactgaactgaaaaggttagtagttttagaaattaggttagtgtaccgatttggtt 713  Q
    |||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  41659334 catattcaagtaaaataatacatagacttcaagaaatccatgaacac-----tgaaaaggttagtagttttagaatttaggttagtgtaccaatttggtt 41659240  T
Q  714 ttactaaactactttgtctttagt 737  Q
    ||||||||||||||||||||||||    
T  41659239 ttactaaactactttgtctttagt 41659216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 668 - 725
Target Start/End: Complemental strand, 41658309 - 41658252
Alignment:
Q  668 aaaaggttagtagttttagaaattaggttagtgtaccgatttggttttactaaactac 725  Q
    ||||||||||||| || ||||||||||||||||| || |||||||| |||||||||||    
T  41658309 aaaaggttagtagattcagaaattaggttagtgtgccaatttggttgtactaaactac 41658252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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