View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2888-Insertion-11 (Length: 618)
Name: NF2888-Insertion-11
Description: NF2888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2888-Insertion-11 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 8 - 300
Target Start/End: Original strand, 4460230 - 4460522
Alignment:
| Q |
8 |
tgttgtagtccatgtttatgttggatctgatgcttctaaaggttgaacatttaatttaattctttctaaatcaactacatgcataaagattaaaatgaat |
107 |
Q |
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| T |
4460230 |
tgttgtagtccatgtttatgttggatctgatgcttctaaaggttgaacatttaatttaattctttctaaatcaactacatgcataaagattaaaatgaat |
4460329 |
T |
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| Q |
108 |
atgtcacatacattagagatcaatttcaacattgagcaaatttttaagagtaaaataaaataagaaagtgcaaaagcaaaaactatatatttgatatttt |
207 |
Q |
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| T |
4460330 |
atgtcacatacattagagatcaatttcaacattgagcaaatttttaagagtaaaataaaataagaaagtgcaaaagcaaaaactatatatttgatatttt |
4460429 |
T |
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| Q |
208 |
gctttctgaattgtgtgcgatgacattacttgtttgttccacagtcttagtggtgaagcaatccatgttcatattcaaagctctacgacagtt |
300 |
Q |
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| T |
4460430 |
gctttctgaattgtgtgcgatgacattacttgttagttcctcagtcttagtggtgaagcaattcatgttcatattcaaagctctacaacagtt |
4460522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 303 - 614
Target Start/End: Original strand, 17477739 - 17478050
Alignment:
| Q |
303 |
tttactgtcactcaaggtgctgctaatcaatatcggtatcgtggaagtgtcttcagtgaatgcacttctccgtggctgctctgtcattgaaactctggat |
402 |
Q |
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| T |
17477739 |
tttaccgtcactaaagatgctgctaatcaatattggtcatatggaagtaccttccattaatgcactcctctgtggctgcccaaatatagaatctctgaat |
17477838 |
T |
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| Q |
403 |
ctttgcttttctgcggatcgcttggacacagtttgcatcccaacttccttaaaacggctgacgatcgccattgagaatgatgttggggcttgccttgaaa |
502 |
Q |
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| T |
17477839 |
cttggcttttctccgcaaagcttagacaaagtttgcatcccacctcccttgaaaaggcttaaaatcaccgtagcaaatgttgttggggcttaccttgaaa |
17477938 |
T |
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| Q |
503 |
taaatgcgcctgatcttgagtatcttcacactactggaatcacattcagccatgttttcagcatgtacaacttgaacaacgtggtgaaagcctgtcttga |
602 |
Q |
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| T |
17477939 |
taaatgcaccgaatcttgagtaccttaacattaccggaatcacattcggccaagttttcaccatgtataacttgcacaatgtggtggaagcgtatcttga |
17478038 |
T |
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| Q |
603 |
tttctttcccca |
614 |
Q |
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| T |
17478039 |
tgtctttcccca |
17478050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 479 - 614
Target Start/End: Complemental strand, 29585487 - 29585352
Alignment:
| Q |
479 |
atgatgttggggcttgccttgaaataaatgcgcctgatcttgagtatcttcacactactggaatcacattcagccatgttttcagcatgtacaacttgaa |
578 |
Q |
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| T |
29585487 |
atgaagttggggtttaccttgaaataaatgcgcctgatcttgagtaccttaacattacccgaatcacatttggccaggatttcagcatgtacaacttaca |
29585388 |
T |
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| Q |
579 |
caacgtggtgaaagcctgtcttgatttctttcccca |
614 |
Q |
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| T |
29585387 |
caaagtcgtggaagcgtatcttgatgtctttcccca |
29585352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 432 - 593
Target Start/End: Complemental strand, 4427819 - 4427658
Alignment:
| Q |
432 |
agtttgcatcccaacttccttaaaacggctgacgatcgccattgagaatgatgttggggcttgccttgaaataaatgcgcctgatcttgagtatcttcac |
531 |
Q |
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| T |
4427819 |
agtttgcgtcccaccttctttgaaaaggttgacaatcatcattgataatgaagttggggcttaccttgaaatgaaagcaccggatcttgagtacctttac |
4427720 |
T |
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| Q |
532 |
actactggaatcacattcagccatgttttcagcatgtacaacttgaacaacgtggtgaaagc |
593 |
Q |
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| T |
4427719 |
atcaacggaatcacatccggcgaagtttttagcatgtacaacttgcacaatgtggtggaagc |
4427658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 346 - 612
Target Start/End: Original strand, 8340837 - 8341103
Alignment:
| Q |
346 |
gaagtgtcttcagtgaatgcacttctccgtggctgctctgtcattgaaactctggatctttgcttttctgcggatcgcttggacacagtttgcatcccaa |
445 |
Q |
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| T |
8340837 |
gaagtatcttctgtgaatgcacttcttgatggctgctcaagtatagaaattctggatcttggcttttcagcccaaagcttggataaagtttgtgtcccgc |
8340936 |
T |
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| Q |
446 |
cttccttaaaacggctgacgatcgccattgagaatgatgttggggcttgccttgaaataaatgcgcctgatcttgagtatcttcacactactggaatcac |
545 |
Q |
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| T |
8340937 |
cttccttgaaaaggttgaaaatcaccattgagaatgatgttggagcttacttggaagtaaatgcgccggatcttcaataccttaacattacccaaatcac |
8341036 |
T |
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| Q |
546 |
attcagccatgttttcagcatgtacaacttgaacaacgtggtgaaagcctgtcttgatttctttccc |
612 |
Q |
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| T |
8341037 |
attcggcgaaggtttcagcttgtacagcttgcccaacgtggtggaagcgtatcttgatgtctttccc |
8341103 |
T |
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