View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2888-Insertion-12 (Length: 605)
Name: NF2888-Insertion-12
Description: NF2888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2888-Insertion-12 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 514; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 8 - 605
Target Start/End: Original strand, 36861982 - 36862576
Alignment:
| Q |
8 |
gaccactataatggtgtatatctgaattcgccatgtgctcctcttcctgtaagtttatttgacaaacgctgttattgatagcatacatgcaacctctgtt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36861982 |
gaccactataatggtgtatatctgaattcgccatgtgctcctcttcctgtaagtctatttgacaaacgctgttattgatagcatacatgcaacctctgtt |
36862081 |
T |
|
| Q |
108 |
taaatgcttggtgtaattgtttgtacttgtaggatttgtcttattgcaagggaaagaacaaagaggaactccgtgccatgggaaagtgagatcaactcaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36862082 |
taaatgcttggtgtaattgtttgtacttgtaggatttgtcttattgcaagggaaagaacaaagaggaactccgtgccatgggaaagcgagatcaactcaa |
36862181 |
T |
|
| Q |
208 |
gaaaggtttgtttctttttgatctaaatcacaatgcgtggacactttgcatgcttgacttgattactttgttttattcaacaacaaacaaactttatccc |
307 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36862182 |
gaaaggtttgcttctttatgatctaaatcacaatgcgtggacactatgcatgcttgacttgattactttgttttattcaacaacaagcaaactttatccc |
36862281 |
T |
|
| Q |
308 |
actaaatagggttagctacatcgaccaaacgaaacaaaactttgaatcttgatcaatgttgctaattctttattagctttgagacaatggtgggatttta |
407 |
Q |
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|| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36862282 |
acgaagtagggttggctacatcgaccaaacgaaacaaaactttgaatcttgatcaatgttgctaattctttattaactttgagacaatggtgggatttta |
36862381 |
T |
|
| Q |
408 |
nnnnnnnngtaatggtctgctttcattttatctgattggctttatgacatttgattaatttaggggataaagctttggaatgatatcagaatgctaccac |
507 |
Q |
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| T |
36862382 |
-tttttttgtaatggtctgctttcattttatctgattggctttatgacatttgattaatttaggggataaagctttggaatgatatcagaatgctaccac |
36862480 |
T |
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| Q |
508 |
cttccagaatgctgccttcatttatttattttaattggacccataaataagaatatggcgaatgtagacaattatgtaatgtgcctgagttgtgtgca |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36862481 |
cttccagaatgctgccttcatttatttattttaattggacccataaataaga--atggcaaatgtagacaattatgtaatgtgcctgagttgtgtgca |
36862576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 8 - 293
Target Start/End: Original strand, 36851527 - 36851814
Alignment:
| Q |
8 |
gaccactataatggtgtatatctgaattcgccatgtgctcctcttcctgtaagtttatttgacaaacgctgttattgatagcatacatgcaacctctgtt |
107 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| |||||| |||||||| |||||||||| | ||||||||||||||||||| |||||| |||| |
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| T |
36851527 |
gaccactataattctgtatatctgaattcgccatgttttcctctacctgtaaggctatttgacaa-ctttgttattgatagcatacatacaacctgtgtt |
36851625 |
T |
|
| Q |
108 |
taaatgcttggtgtaattgtttgtacttg----taggatttgtcttattgcaagggaaagaacaaagaggaactccgtgccatgggaaagtgagatcaac |
203 |
Q |
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| T |
36851626 |
tgaatgcatggtgtaattgtttgtatgtgcacgtaggatttgtcttattctatgggaaagaacaaagaggaactccttgccatggcaaagggacatcaac |
36851725 |
T |
|
| Q |
204 |
tcaagaaaggtttgtttctttttgatctaaatcacaatgcgtggacactttgcatgcttgacttgattactttgttttattcaacaacaa |
293 |
Q |
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| T |
36851726 |
tcaagaaaggtttgcttcttgatgatcgaaatcacaatttgtggagattttgcatgcttgacttgattacttt-ttttattcaacaacaa |
36851814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 37371471 - 37371191
Alignment:
| Q |
8 |
gaccactataatggtgtatatctgaattcgccatgtgctcctcttcctgtaagtttatttgacaaacgctgttattgatagcatacatgcaacctctgtt |
107 |
Q |
| |
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|||||||||||| ||||||| ||||||| |||||| |||| | ||||||||| |||| ||||| | ||||||||||||||||| |||| |||| |||| |
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| T |
37371471 |
gaccactataatactgtatatgtgaattcaccatgttttcctgtacctgtaagtctattcgacaa-ctctgttattgatagcatagatgcgacctgtgtt |
37371373 |
T |
|
| Q |
108 |
taaatgcttggtgtaattgtttgtacttg----taggatttgtcttattgcaagggaaagaacaaagaggaactccgtgccatgggaaagtgagatcaac |
203 |
Q |
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| T |
37371372 |
tgaatgcatggtgtaattgtttgtatgtgcacataggatttgtctcatttttcgggaaagaacaaagaggaactccttgccatggcaaagggaaatcaag |
37371273 |
T |
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| Q |
204 |
tcaagaaaggtttgtttctttttgatctaaatcacaatgcgtggacactttgcatgcttgacttgattactttgttttattc |
285 |
Q |
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| T |
37371272 |
tcaagaaaggtttgcttcttaatgatctaaattacagtttgtgtagattttgcatgcttgaattggttactttgttttattc |
37371191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 10 - 284
Target Start/End: Original strand, 36868029 - 36868308
Alignment:
| Q |
10 |
ccactataatggtgtatatctgaattcgccatgtgctcctcttcctgtaagtttatttgacaaacgctgttattgatagcatacatgcaacctctgttta |
109 |
Q |
| |
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||||||||||| |||||||||||||| ||||| | |||||| |||||||| |||||||||| | |||||||||||||||||||||| | ||||| |
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| T |
36868029 |
ccactataatgatgtatatctgaatttgccatcttttcctctacctgtaaggctatttgacaactctttttattgatagcatacatgcaacatgtgtttg |
36868128 |
T |
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| Q |
110 |
aatgcttggtgtaattgtttgtactt----gtaggatttgtcttattgcaagggaaagaacaaagaggaactccgtgccatgggaaagtgagatcaactc |
205 |
Q |
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||||| ||||||||||||||||| | ||||||||||||||||| | | |||| ||||||||||||||| |||||||| |||| ||||| ||||| |
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| T |
36868129 |
aatgcatggtgtaattgtttgtatgtggacgtaggatttgtcttattctatgagaaaaaacaaagaggaactcattgccatggcaaagggagattaactc |
36868228 |
T |
|
| Q |
206 |
aagaaaggtttg-tttctttttgatctaaatcacaatgcgtggacactttgcatgcttgacttgattactttgttttatt |
284 |
Q |
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|| ||||||||| || ||| ||||||||||||| || ||||| | ||||||| ||||||||||||| |||||||||| |
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| T |
36868229 |
aataaaggtttgcttccttaatgatctaaatcaccatttgtggagattttgcatccttgacttgattaacttgttttatt |
36868308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 8 - 281
Target Start/End: Complemental strand, 17615934 - 17615648
Alignment:
| Q |
8 |
gaccactataatggtgtatatctgaattcgccatgtgctcctcttcctgtaagtttatttgacaaacgctgttattgatagcatacatgcaacctctgtt |
107 |
Q |
| |
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|||||||||| | |||||| ||||||| |||||| |||| | ||||||| |||||||||||| | ||||||||||||||||||||| |||| |||| |
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| T |
17615934 |
gaccactatagtactgtatacgtgaattcaccatgttttcctgtacctgtaaatttatttgacaa-cactgttattgatagcatacatgtgacctgtgtt |
17615836 |
T |
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| Q |
108 |
taa----atgcttggtgtaattgtttgtac-ttg---------taggatttgtcttattgcaagggaaagaacaaagaggaactccgtgccatgggaaag |
193 |
Q |
| |
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| | |||| ||||||||||||||||| ||| |||||||||||| ||| ||| ||||||||||||||||||| |||||||| |||| |
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| T |
17615835 |
tgactgcatgcgtggtgtaattgtttgtatgttgatgttcacataggatttgtctcatttttcggggaagaacaaagaggaactccttgccatggaaaag |
17615736 |
T |
|
| Q |
194 |
tgagatcaactcaagaaaggtttgtttctttttgatctaaatcacaatgcgtggacactttgcatgcttgacttgattactttgtttt |
281 |
Q |
| |
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|| |||| |||||||||||||| ||||| |||||||||||||||| ||| | | ||| ||||||||| ||| |||||||||||| |
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| T |
17615735 |
ggaaatcatgtcaagaaaggtttgcttcttaatgatctaaatcacaatttgtgtagatttttcatgcttgaattggttactttgtttt |
17615648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 285 - 319
Target Start/End: Complemental strand, 14031076 - 14031042
Alignment:
| Q |
285 |
caacaacaaacaaactttatcccactaaatagggt |
319 |
Q |
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||||||||| ||||||||||||||||||||||||| |
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| T |
14031076 |
caacaacaaccaaactttatcccactaaatagggt |
14031042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 12026014 - 12026067
Alignment:
| Q |
286 |
aacaacaaacaaactttatcccactaaatagggttagctacatcgaccaaacga |
339 |
Q |
| |
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|||||||| |||||||||||||||||| | |||| |||||||| || ||||||| |
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| T |
12026014 |
aacaacaaccaaactttatcccactaagtggggtcagctacatggatcaaacga |
12026067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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