View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2888-Insertion-14 (Length: 609)
Name: NF2888-Insertion-14
Description: NF2888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2888-Insertion-14 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 285 - 593
Target Start/End: Original strand, 29039581 - 29039889
Alignment:
| Q |
285 |
tacttgtatttgttgtatccactgaagtcttgtttttccctctgttatcggtcctcagttttccggtcagcgactgctctttttctgaaaaatctatgaa |
384 |
Q |
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| T |
29039581 |
tacttgtatttgttgtatccactgaagtcttgtttttccctctgttatcggtcctcagttttctggtcagcgactgctctttttctgaaaaatctatgaa |
29039680 |
T |
|
| Q |
385 |
atcctgcacaacgctctgcactccatttgaggaaattgtagaattcattctttcacgtccatgattaacatctgacgtcggtttcacattcttaatcaga |
484 |
Q |
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| T |
29039681 |
atcctgcacaacgctctgcactccatttgaggaaattgtagaattcattctttcacgtccatgattaacatctgacgtcggtttcacattcttaatcaga |
29039780 |
T |
|
| Q |
485 |
tctgcatcaccaagtgtaccttctggatgaccaatatcaggggaggatagtaaaggtgaggtaattgttgactggttctggccagcaggatcagtggtag |
584 |
Q |
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| T |
29039781 |
tctgcatcaccaagtgtaccttctggatgaccaatatcagaggaggatagtaaaggtgaagtaattgttgactggttctggtcagcaggatcagtggtag |
29039880 |
T |
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| Q |
585 |
aatattctt |
593 |
Q |
| |
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||||||||| |
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| T |
29039881 |
aatattctt |
29039889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 29039302 - 29039523
Alignment:
| Q |
8 |
aaaattgcattgaagggattctagtggaaatcttcatcgttcaatcaagtcttagtc--tcatcgactttgaccacatgcagtagagataaatgagcggt |
105 |
Q |
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| T |
29039302 |
aaaattgcattggagggattctagtggaaatcttcatcgttcaatcaaatcttcatcgctcatcgactttgaccgcatgcagtagagataaataagcggt |
29039401 |
T |
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| Q |
106 |
tgaaattctactgcagaaaatttccaccggagagaacccgttcccaactaagagacagttatgcaggttttatgattctaatgctcagctaagtatccct |
205 |
Q |
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| T |
29039402 |
ggaaattctactgcagaaaatttccaccggagagaacccgttcccaactaagagacagttatgcaggttttatgattctaatgctcagctaagtatccct |
29039501 |
T |
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| Q |
206 |
atgatttagctagattcttttt |
227 |
Q |
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|||||||||||||||||||||| |
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| T |
29039502 |
atgatttagctagattcttttt |
29039523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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