View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2888-Insertion-17 (Length: 595)
Name: NF2888-Insertion-17
Description: NF2888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2888-Insertion-17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 568; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 7 - 595
Target Start/End: Original strand, 5330150 - 5330740
Alignment:
| Q |
7 |
atgaaattgaagcaattatgtatttataacagagttgcctcaagttttgtacttgccacaagtcaaaagaccataaggaggacagaaaaactgaaagaca |
106 |
Q |
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| T |
5330150 |
atgaaattgaagcaattgtgtatttataacagagttgcctcaagttttgtacttgccacaagtcaaaagaccataaggaggacagaaaaactgaaagaca |
5330249 |
T |
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| Q |
107 |
ctgtggttggcataggagaagaagctcttggggccataaacagagtaatgagaacaactaaacagatgcagtatcttcttcttccttataatccacaaat |
206 |
Q |
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| T |
5330250 |
ctgtggttggcataggagaagaagctcttggggccataaacagagtaatgagaacaactaaacagatgcagtatcttcttcttccttataatccacaaat |
5330349 |
T |
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| Q |
207 |
atgcgcgagttt--gaattccactaccgatgatctcagaacaaactcgcgagtgattcgtcgttttatcgacaaaagtgaacaatcattcaacaaagcca |
304 |
Q |
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| T |
5330350 |
atgcgcgagttttagaattccactaccgatgatctcagaacaaactcgcgtgtgattcgtcgttttatcgacaaaagtgaacaatcattcaacaaagcca |
5330449 |
T |
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| Q |
305 |
ttgatactttgtatgcattaaacttgatttctctttaaataaactaatcctgtttcttgctttttaatttagtttaatttattgatttgatgctcttaat |
404 |
Q |
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| T |
5330450 |
ttgatactttgtatgcattaaacttgatttctctttaaataaactaatcctgtttcttgctttttaatttagtttaatttattgatttgatgctcttaat |
5330549 |
T |
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| Q |
405 |
gtgtcataggcatacagcacatatagttgttctaacggtcaacttagtaacactagttgcagcactaggtaagcatattaatccaatagacccataaaaa |
504 |
Q |
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| T |
5330550 |
gtgtcataggcatacagcacatatagttgttctaacggtcaacttagtaacactagttgcagcactaggtaagcatattaatccaatagacccataaaaa |
5330649 |
T |
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| Q |
505 |
ctttaccatttttagtatttgattaatttcctaacacaattagtgaaattaaaacctttgatttgatttaactaatggtttggtttctttg |
595 |
Q |
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| T |
5330650 |
ctttaccattattagtatttgattaatttcctaacacaattagtgaaattaaaacctttgatttgatttaactaatggtttggtttctttg |
5330740 |
T |
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