View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2888-Insertion-18 (Length: 572)

Name: NF2888-Insertion-18
Description: NF2888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2888-Insertion-18
NF2888-Insertion-18
[»] chr5 (9 HSPs)
chr5 (8-572)||(29712453-29713017)
chr5 (283-513)||(29687640-29687870)
chr5 (292-533)||(29695721-29695962)
chr5 (47-244)||(29696064-29696261)
chr5 (419-488)||(42562726-42562795)
chr5 (168-237)||(42562478-42562547)
chr5 (422-484)||(1812043-1812105)
chr5 (44-184)||(29688023-29688166)
chr5 (422-483)||(178638-178699)
[»] chr1 (6 HSPs)
chr1 (385-483)||(24309796-24309894)
chr1 (422-497)||(24322067-24322142)
chr1 (359-484)||(24340032-24340157)
chr1 (425-483)||(24415456-24415514)
chr1 (68-110)||(24310163-24310205)
chr1 (422-470)||(24366787-24366835)
[»] chr8 (5 HSPs)
chr8 (361-484)||(15348480-15348603)
chr8 (421-507)||(12199902-12199988)
chr8 (421-507)||(12444330-12444416)
chr8 (421-507)||(12194896-12194982)
chr8 (421-507)||(12439324-12439410)
[»] chr4 (36 HSPs)
chr4 (386-501)||(48156789-48156904)
chr4 (373-484)||(48862859-48862973)
chr4 (361-480)||(7774166-7774285)
chr4 (359-484)||(48735647-48735775)
chr4 (361-478)||(7877344-7877461)
chr4 (389-477)||(7904657-7904745)
chr4 (388-498)||(45366582-45366695)
chr4 (389-500)||(48148047-48148161)
chr4 (386-501)||(45372419-45372534)
chr4 (394-477)||(49044599-49044682)
chr4 (388-480)||(7771026-7771118)
chr4 (418-478)||(49048993-49049053)
chr4 (386-480)||(7907947-7908041)
chr4 (421-483)||(33134223-33134285)
chr4 (386-484)||(48891027-48891125)
chr4 (387-484)||(7765239-7765336)
chr4 (422-482)||(48870162-48870222)
chr4 (422-482)||(48885848-48885908)
chr4 (421-480)||(7813102-7813161)
chr4 (421-480)||(7822591-7822650)
chr4 (386-477)||(49041500-49041591)
chr4 (388-480)||(7789711-7789803)
chr4 (390-477)||(7238086-7238173)
chr4 (421-480)||(7800259-7800318)
chr4 (421-476)||(33133663-33133718)
chr4 (373-484)||(48170935-48171049)
chr4 (389-474)||(48875474-48875559)
chr4 (381-477)||(37827351-37827447)
chr4 (419-482)||(48898342-48898405)
chr4 (425-480)||(48902572-48902627)
chr4 (205-242)||(7771261-7771298)
chr4 (387-480)||(7786065-7786158)
chr4 (205-242)||(7904890-7904927)
chr4 (205-237)||(7774010-7774042)
chr4 (205-237)||(7789951-7789983)
chr4 (154-242)||(48875700-48875788)
[»] scaffold0508 (1 HSPs)
scaffold0508 (385-484)||(11880-11979)
[»] chr6 (1 HSPs)
chr6 (382-484)||(21015394-21015496)
[»] chr3 (4 HSPs)
chr3 (68-480)||(47451954-47452363)
chr3 (421-484)||(11024934-11024997)
chr3 (421-480)||(11006359-11006418)
chr3 (421-484)||(11015922-11015985)


Alignment Details
Target: chr5 (Bit Score: 557; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 8 - 572
Target Start/End: Original strand, 29712453 - 29713017
Alignment:
Q  8 aaaagccctaagcgagttaacttatcataagcattgggatcatatgacatggaaagcacgaagtaatcatcccttgactcgtcatacccaaaaccatata 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712453 aaaagccctaagcgagttaacttatcataagcattgggatcatatgacatggaaagcacgaagtaatcatcccttgactcgtcatacccaaaaccatata 29712552  T
Q  108 aatgatatgcatctaaattgcaatcaataagagagtttggtatatatttgtgaactccagtggatggattccatagacagagacatgaaccacaactcaa 207  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712553 aatgatatgcatctaaattgcaatcaataagagaatttggtatatatttgtgaactccagtggatggattccatagacagagacatgaaccacaactcaa 29712652  T
Q  208 aagtataaaccctctacacgaacctttaatatcaagttgtgtaaaagactgtggaagcaaaaaattaatattcaatgaataggaagcactatcatcgtag 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712653 aagtataaaccctctacacgaacctttaatatcaagttgtgtaaaagactgtggaagcaaaaaattaatattcaatgaataggaagcactatcatcgtag 29712752  T
Q  308 agtgatgtttccaaatcaatagatagagattccagatttggagttatcaatagaattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29712753 agtgatgtttccaaatcaatagatagagattccagatttggagttatcaatagaattctaggagcgtgtgttttggcggtaagttgaaaatgtgaatttg 29712852  T
Q  408 cgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712853 cgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 29712952  T
Q  508 ctcaatagatagatattgctctgtcttcttcatcgtctccattcacacgtttcctcctttgccaa 572  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712953 ctcaatagatagatattgctctgtcttcttcatcgtctccattcacacgtttcctcctttgccaa 29713017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 283 - 513
Target Start/End: Complemental strand, 29687870 - 29687640
Alignment:
Q  283 tgaataggaagcactatcatcgtagagtgatgtttccaaatcaatagatagagattccagatttggagttatcaatagaattctaggagcgtgtgttttg 382  Q
    |||||| ||||||||||||||||  || |||||||| ||||| |||||||||||||| |||| |||| |||| || ||||||||||||| |||||  |||    
T  29687870 tgaataagaagcactatcatcgtgaagcgatgtttcaaaatctatagatagagattcaagatctggatttatgaacagaattctaggagtgtgtgcattg 29687771  T
Q  383 gcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggta 482  Q
    || |||||||||||||| |||||||| || | || |||||| || |||||||||||  |||||||||| |||||||| || |||||||||||||| ||||    
T  29687770 gcggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcactggta 29687671  T
Q  483 acattaaaaggatttgaatgattaactcaat 513  Q
    || ||| ||||||||||||||| || |||||    
T  29687670 actttagaaggatttgaatgatcaattcaat 29687640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 292 - 533
Target Start/End: Complemental strand, 29695962 - 29695721
Alignment:
Q  292 agcactatcatcgtagagtgatgtttccaaatcaatagatagagattccagatttggagttatcaatagaattctaggagcgtgtgttttggcagtaagt 391  Q
    ||||||||||||||  || |||  ||| | ||| |||||||||||||  |||| |||||||||||| | |||||||   | ||||||   ||  ||||||    
T  29695962 agcactatcatcgttaagcgataattcaagatctatagatagagattgaagatatggagttatcaacataattctattcgtgtgtgtagcggtggtaagt 29695863  T
Q  392 tgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaa 491  Q
    ||||||||||||||||| || | || |||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| || |||||| |||| |    
T  29695862 tgaaaatgtgaatttgcaaagtgaggttgagatataagagataaccataacttacaaacgcatttgaaacgaataagagacttgactggtaaccttaata 29695763  T
Q  492 ggatttgaatgattaactcaatagatagatattgctctgtct 533  Q
    ||||||||||||||||||||| ||  ||||||  ||||||||    
T  29695762 ggatttgaatgattaactcaaaaggaagatatgtctctgtct 29695721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 47 - 244
Target Start/End: Complemental strand, 29696261 - 29696064
Alignment:
Q  47 tcatatgacatggaaagcacgaagtaatcatcccttgactcgtcatacccaaaaccatataaatgatatgcatctaaattgcaatcaataagagagtttg 146  Q
    ||||| ||||| |||| ||| |||||||||||  ||||||||||||||||||||||||| |||| || |||||||  |||| |||||||   ||     |    
T  29696261 tcataggacattgaaatcaccaagtaatcatctgttgactcgtcatacccaaaaccatagaaataatttgcatctggattggaatcaattgtagtaaaag 29696162  T
Q  147 gtatatatttgtgaactccagtggatggattccatagacagagacatgaaccacaactcaaaagtataaaccctctacacgaacctttaatatcaagt 244  Q
    ||||   |||||||| ||| |||||||||||||||| |||||| | |||   |||  ||||||||||||| ||||||||||||||||||| |||||||    
T  29696161 gtattcgtttgtgaaatccggtggatggattccatatacagaggcttgagtaacagttcaaaagtataaagcctctacacgaacctttaaaatcaagt 29696064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 419 - 488
Target Start/End: Original strand, 42562726 - 42562795
Alignment:
Q  419 tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacatta 488  Q
    |||||||| |||||||||||  ||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  42562726 tgagagattagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtaacatta 42562795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 42562478 - 42562547
Alignment:
Q  168 tggatggattccatagacagagacatgaaccacaactcaaaagtataaaccctctacacgaacctttaat 237  Q
    ||||||||||||||||  |||  |||| |||||||  |||||||||||||||||||||||||||||||||    
T  42562478 tggatggattccataggtagaagcatgcaccacaatgcaaaagtataaaccctctacacgaacctttaat 42562547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 484
Target Start/End: Complemental strand, 1812105 - 1812043
Alignment:
Q  422 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 484  Q
    ||||||||||||||||||||||||||||| || ||| |||| || ||| ||||||| ||||||    
T  1812105 gagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaac 1812043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 184
Target Start/End: Complemental strand, 29688166 - 29688023
Alignment:
Q  44 ggatcatatgacatggaaagcacgaagtaatcatcccttgactcgtcatacccaaaaccatataaatgatatgcatctaaattgcaatcaataagag-ag 142  Q
    ||||||||  |||| ||||| || | |||||||||  | ||||| ||||||||||||||||| ||||  | ||| ||||||||| ||||||||| || ||    
T  29688166 ggatcatagcacattgaaagaaccaggtaatcatcagtagactcatcatacccaaaaccatagaaatactttgcttctaaattggaatcaataacagtag 29688067  T
Q  143 t--ttggtatatatttgtgaactccagtggatggattccataga 184  Q
    |    ||||| | | |||||||||| ||||||||||||||||||    
T  29688066 taaagggtatttgtctgtgaactccggtggatggattccataga 29688023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 483
Target Start/End: Complemental strand, 178699 - 178638
Alignment:
Q  422 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 483  Q
    ||||| ||||| |||||  |||||||||| || |||||||||||||||||||| || |||||    
T  178699 gagatgagagataaccaagacttacaaacacatttgaaacgaataagagacttaactggtaa 178638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 385 - 483
Target Start/End: Complemental strand, 24309894 - 24309796
Alignment:
Q  385 agtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 483  Q
    |||||||||||||||||||||||| || | ||| | ||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||    
T  24309894 agtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaa 24309796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 422 - 497
Target Start/End: Complemental strand, 24322142 - 24322067
Alignment:
Q  422 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggattt 497  Q
    |||||||||||||||||  ||||||||||||| |||||||||||||||||||||||| | ||| ||| ||||||||    
T  24322142 gagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagacttcaccagcaaccttagaaggattt 24322067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 359 - 484
Target Start/End: Complemental strand, 24340157 - 24340032
Alignment:
Q  359 agaattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttga 458  Q
    ||||||||| ||| |||||||   ||||||| |||||| ||||||||||| || | |   | ||||||||| ||||||||| ||||||||||  | ||||    
T  24340157 agaattctaagagtgtgtgttgcagcagtaacttgaaagtgtgaatttgcaaagtgattatcagagataagtgaaaaccatgacttacaaacagatttga 24340058  T
Q  459 aacgaataagagacttcaccggtaac 484  Q
    |||||||||||||||| |||||||||    
T  24340057 aacgaataagagacttaaccggtaac 24340032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 425 - 483
Target Start/End: Complemental strand, 24415514 - 24415456
Alignment:
Q  425 ataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 483  Q
    ||||||||||||||  |||||| |||||| |||||||||||||||||||| ||||||||    
T  24415514 ataagagaaaaccaagacttacgaacgcatttgaaacgaataagagacttaaccggtaa 24415456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 24310205 - 24310163
Alignment:
Q  68 aagtaatcatcccttgactcgtcatacccaaaaccatataaat 110  Q
    ||||||||||| |||||||||||||| ||||||||||| ||||    
T  24310205 aagtaatcatctcttgactcgtcataaccaaaaccatagaaat 24310163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 422 - 470
Target Start/End: Complemental strand, 24366835 - 24366787
Alignment:
Q  422 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagag 470  Q
    |||||||||||||||||| |||| ||||| || ||||||||||| ||||    
T  24366835 gagataagagaaaaccatgacttgcaaacacatttgaaacgaatcagag 24366787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 361 - 484
Target Start/End: Complemental strand, 15348603 - 15348480
Alignment:
Q  361 aattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaa 460  Q
    ||||||| ||| |||||||  ||| |||| ||||||||||||||||||||| | ||  | ||||||||||||||||||  ||||||||||||| ||||||    
T  15348603 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 15348504  T
Q  461 cgaataagagacttcaccggtaac 484  Q
    || |||||||||||||||||||||    
T  15348503 cgtataagagacttcaccggtaac 15348480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 421 - 507
Target Start/End: Complemental strand, 12199988 - 12199902
Alignment:
Q  421 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 507  Q
    ||||||||||||||||||| |||||||||| || |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  12199988 agagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 12199902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 421 - 507
Target Start/End: Complemental strand, 12444416 - 12444330
Alignment:
Q  421 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 507  Q
    ||||||||||||||||||| |||||||||| || |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  12444416 agagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 12444330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 421 - 507
Target Start/End: Complemental strand, 12194982 - 12194896
Alignment:
Q  421 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 507  Q
    |||||||||||| |||||| ||||||||| ||| |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  12194982 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 12194896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 421 - 507
Target Start/End: Complemental strand, 12439410 - 12439324
Alignment:
Q  421 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 507  Q
    |||||||||||| |||||| ||||||||| ||| |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  12439410 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 12439324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 386 - 501
Target Start/End: Original strand, 48156789 - 48156904
Alignment:
Q  386 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaaca 485  Q
    |||| ||||||||| |||||||| |||| ||  |  |||||||||||||||||  |||||||||||||||||||||| | |||||||||||||||||||     
T  48156789 gtaatttgaaaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaacc 48156888  T
Q  486 ttaaaaggatttgaat 501  Q
     |||||||||||||||    
T  48156889 ataaaaggatttgaat 48156904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 373 - 484
Target Start/End: Complemental strand, 48862973 - 48862859
Alignment:
Q  373 gtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcag-at--tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataaga 469  Q
    |||||||  ||||||||||||||||||||||||||| || | || ||  ||||||||||||||||||||  |||| |||||||| |||||||||||||||    
T  48862973 gtgtgttgcggcagtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataaga 48862874  T
Q  470 gacttcaccggtaac 484  Q
    |||||||||||||||    
T  48862873 gacttcaccggtaac 48862859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 361 - 480
Target Start/End: Original strand, 7774166 - 7774285
Alignment:
Q  361 aattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaa 460  Q
    ||||||||||| ||| ||| |||  || |||||||||||||||||||| ||||  |  | |||||||||||||||||||| ||||||||| || ||||||    
T  7774166 aattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaacacatttgaaa 7774265  T
Q  461 cgaataagagacttcaccgg 480  Q
     |||||||||||||||||||    
T  7774266 tgaataagagacttcaccgg 7774285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 359 - 484
Target Start/End: Original strand, 48735647 - 48735775
Alignment:
Q  359 agaattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattga---gagataagagaaaaccataacttacaaacgcact 455  Q
    ||||||||| ||| ||| ||| |||| |||| || ||||||||||||||| |||||||  | |   |||||||||||||||||  |||||||||| || |    
T  48735647 agaattctacgagtgtgggttatggcggtaatttcaaaatgtgaatttgcaaaatcagtatcacaggagataagagaaaaccaagacttacaaacacatt 48735746  T
Q  456 tgaaacgaataagagacttcaccggtaac 484  Q
    |||||||||||||||||||||||||||||    
T  48735747 tgaaacgaataagagacttcaccggtaac 48735775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 361 - 478
Target Start/End: Complemental strand, 7877461 - 7877344
Alignment:
Q  361 aattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaa 460  Q
    ||||||||||| ||| ||| |||  || |||||||||||||||||||| ||||  |  | |||||||||||||||||||| |||||||| ||| ||||||    
T  7877461 aattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaa 7877362  T
Q  461 cgaataagagacttcacc 478  Q
    || |||||||||||||||    
T  7877361 cgtataagagacttcacc 7877344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 389 - 477
Target Start/End: Complemental strand, 7904745 - 7904657
Alignment:
Q  389 agttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 477  Q
    |||||||||||||||||||| || | ||  | |||||||||||||||||||||||||||||| || |||||||| ||||||||||||||    
T  7904745 agttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcac 7904657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 388 - 498
Target Start/End: Original strand, 45366582 - 45366695
Alignment:
Q  388 aagttgaaaatgtgaatttgcgaaatcagatt---gagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 484  Q
    ||||||||||||||||||||| || |  || |   |||||||||||||||||||  |||||||||||||||||||||| |||||||||||||| ||||||    
T  45366582 aagttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaac 45366681  T
Q  485 attaaaaggatttg 498  Q
     |||  ||||||||    
T  45366682 cttagtaggatttg 45366695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 389 - 500
Target Start/End: Original strand, 48148047 - 48148161
Alignment:
Q  389 agttgaaaatgtgaatttgcgaaatcag-at--tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaaca 485  Q
    |||| |||||||||||||||||| | || ||  ||||||||||||||||||||  ||||||| || || ||||||||||||||||||||||| ||||||     
T  48148047 agttcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaaccaagacttacagacacatttgaaacgaataagagacttcactggtaacc 48148146  T
Q  486 ttaaaaggatttgaa 500  Q
    || ||||||||||||    
T  48148147 ttgaaaggatttgaa 48148161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 386 - 501
Target Start/End: Original strand, 45372419 - 45372534
Alignment:
Q  386 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaaca 485  Q
    |||| |||||||||||||||||| |||| ||  | |||||||| |||||||||  |||||||||| || |||||||| ||||||||||||||||| |||     
T  45372419 gtaatttgaaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaacc 45372518  T
Q  486 ttaaaaggatttgaat 501  Q
    |||  || ||||||||    
T  45372519 ttagtagaatttgaat 45372534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 394 - 477
Target Start/End: Original strand, 49044599 - 49044682
Alignment:
Q  394 aaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 477  Q
    ||||||||||||||| || |  | ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| ||||    
T  49044599 aaaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcac 49044682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 388 - 480
Target Start/End: Complemental strand, 7771118 - 7771026
Alignment:
Q  388 aagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 480  Q
    ||||||||||||||||||| | || | ||  | ||||||||||||||||||  ||||||||||||| |||||||  |||||||||||||||||    
T  7771118 aagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccgg 7771026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 418 - 478
Target Start/End: Original strand, 49048993 - 49049053
Alignment:
Q  418 ttgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcacc 478  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| |||||    
T  49048993 ttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcacc 49049053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 386 - 480
Target Start/End: Complemental strand, 7908041 - 7907947
Alignment:
Q  386 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 480  Q
    ||||||||||||||||||||||| ||||  |    ||||||||||||||||||| |||||| |||  ||||||||||  ||||||||||||||||    
T  7908041 gtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccgg 7907947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 421 - 483
Target Start/End: Original strand, 33134223 - 33134285
Alignment:
Q  421 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 483  Q
    ||||||||||||||| ||   |||||||||||| |||||||||||||||||||||||||||||    
T  33134223 agagataagagaaaatcaaggcttacaaacgcatttgaaacgaataagagacttcaccggtaa 33134285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 386 - 484
Target Start/End: Complemental strand, 48891125 - 48891027
Alignment:
Q  386 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 484  Q
    |||||||||||||| |||||||| |||| ||  |  |||| ||||||||||||  ||||||||||||| |||||||| ||||||||||| |||| ||||    
T  48891125 gtaagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactttaccgataac 48891027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 484
Target Start/End: Complemental strand, 7765336 - 7765239
Alignment:
Q  387 taagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 484  Q
    ||||||| |||||||||||||| || | ||  | |||||||| |||||||||||||||||||| ||||||||||   |  ||||||||||||||||||    
T  7765336 taagttggaaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaac 7765239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 422 - 482
Target Start/End: Complemental strand, 48870222 - 48870162
Alignment:
Q  422 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggta 482  Q
    ||||||||| |||||||  ||||||||||||| ||||||||||||||||| ||||||||||    
T  48870222 gagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggta 48870162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 422 - 482
Target Start/End: Complemental strand, 48885908 - 48885848
Alignment:
Q  422 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggta 482  Q
    ||||||||| |||||||  ||||||||||||| ||||||||||||||||| ||||||||||    
T  48885908 gagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggta 48885848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 480
Target Start/End: Complemental strand, 7813161 - 7813102
Alignment:
Q  421 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 480  Q
    ||||||||||||||||||| | |||||||| ||||||||||| |||||| ||||||||||    
T  7813161 agagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccgg 7813102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 480
Target Start/End: Complemental strand, 7822650 - 7822591
Alignment:
Q  421 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 480  Q
    ||||||||||||||||||| | |||||||| ||||||||||| |||||| ||||||||||    
T  7822650 agagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccgg 7822591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 477
Target Start/End: Original strand, 49041500 - 49041591
Alignment:
Q  386 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 477  Q
    ||||||| |||||| |||||||| ||||  |  | ||||||||||||||||||  |||| |||||||| ||||||| |||||||||||||||    
T  49041500 gtaagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcatttgaaacaaataagagacttcac 49041591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 480
Target Start/End: Complemental strand, 7789803 - 7789711
Alignment:
Q  388 aagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 480  Q
    ||||||||||||||||||| | || | ||  |  ||||||| |||||||||  ||||||||||||| |||||||  |||||||||||||||||    
T  7789803 aagttgaaaatgtgaattttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccgg 7789711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 477
Target Start/End: Original strand, 7238086 - 7238173
Alignment:
Q  390 gttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 477  Q
    |||| |||||||||||||| || | ||  | ||||||||||||||||||  |||||||||| || |||||||  ||||||||||||||    
T  7238086 gttggaaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcac 7238173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 480
Target Start/End: Complemental strand, 7800318 - 7800259
Alignment:
Q  421 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 480  Q
    ||||| ||||||||||||| | |||||||| ||||||||||| |||||| ||||||||||    
T  7800318 agagacaagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccgg 7800259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 476
Target Start/End: Complemental strand, 33133718 - 33133663
Alignment:
Q  421 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttca 476  Q
    |||||||||||||||||| | |||||||| | | ||||||||||||||||||||||    
T  33133718 agagataagagaaaaccaaagcttacaaatgaatttgaaacgaataagagacttca 33133663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 373 - 484
Target Start/End: Original strand, 48170935 - 48171049
Alignment:
Q  373 gtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcag-at--tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataaga 469  Q
    |||||||| ||| |||| ||||||||| |||||||| || | || ||  ||||||||||||| ||||||  |||||||||| || |||||||| | ||||    
T  48170935 gtgtgtttaggcggtaatttgaaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaaacacatttgaaacgtagaaga 48171034  T
Q  470 gacttcaccggtaac 484  Q
    |||||||||| ||||    
T  48171035 gacttcaccgataac 48171049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 474
Target Start/End: Complemental strand, 48875559 - 48875474
Alignment:
Q  389 agttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagactt 474  Q
    |||||||||||||||||||  ||||  | ||  ||||| |||||||||||  |||| |||||||| ||||||||||| ||||||||    
T  48875559 agttgaaaatgtgaatttgtaaaatggggttcggagatgagagaaaaccaagacttgcaaacgcatttgaaacgaattagagactt 48875474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 477
Target Start/End: Original strand, 37827351 - 37827447
Alignment:
Q  381 tggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 477  Q
    |||| ||||||||||||||||||||||| || || |  | ||| |||||||  |||||| |||||||||||||  | ||||  ||||||||||||||    
T  37827351 tggccgtaagttgaaaatgtgaatttgcaaagtcgggattagatataagagttaaccatgacttacaaacgcatgtaaaacttataagagacttcac 37827447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 482
Target Start/End: Complemental strand, 48898405 - 48898342
Alignment:
Q  419 tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggta 482  Q
    ||||||||||| || |||||  |||||||||| |||||||||||  ||||||||||||| ||||    
T  48898405 tgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagacttcacaggta 48898342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 480
Target Start/End: Complemental strand, 48902627 - 48902572
Alignment:
Q  425 ataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 480  Q
    ||||||||||||||  |||||||||| || ||||||||||| |||||||| |||||    
T  48902627 ataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccgg 48902572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 7771298 - 7771261
Alignment:
Q  205 caaaagtataaaccctctacacgaacctttaatatcaa 242  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  7771298 caaaagtataaaccctctacacgaacctctaatttcaa 7771261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 480
Target Start/End: Complemental strand, 7786158 - 7786065
Alignment:
Q  387 taagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 480  Q
    ||||||| |||||||||||||| || | ||  | |||||||| ||||| ||||| |||||||||||| |||||    |||||||| ||||||||    
T  7786158 taagttggaaatgtgaatttgcaaattgaggatcagagataatagaaatccatagcttacaaacgcatttgaacaatataagagatttcaccgg 7786065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 7904927 - 7904890
Alignment:
Q  205 caaaagtataaaccctctacacgaacctttaatatcaa 242  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  7904927 caaaagtataaaccctctacacgaacctctaatttcaa 7904890  T

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Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 7774010 - 7774042
Alignment:
Q  205 caaaagtataaaccctctacacgaacctttaat 237  Q
    |||||||||||||||||||||||||||| ||||    
T  7774010 caaaagtataaaccctctacacgaacctctaat 7774042  T

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Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 7789983 - 7789951
Alignment:
Q  205 caaaagtataaaccctctacacgaacctttaat 237  Q
    |||||||||||||||||||||||||||| ||||    
T  7789983 caaaagtataaaccctctacacgaacctctaat 7789951  T

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Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 48875788 - 48875700
Alignment:
Q  154 tttgtgaactccagtggatggattccatagacagagacatgaaccacaactcaaaagtataaaccctctacacgaacctttaatatcaa 242  Q
    |||||||| ||| |||||||||||||||||  |||| | ||||  ||||  ||| |||||||| ||||| || ||||||||||| ||||    
T  48875788 tttgtgaaatccggtggatggattccataggtagaggcttgaaaaacaatgcaacagtataaagcctctgcaagaacctttaatttcaa 48875700  T

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Target: scaffold0508 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 385 - 484
Target Start/End: Complemental strand, 11979 - 11880
Alignment:
Q  385 agtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 484  Q
    |||||||||||||||||||||||| || | |   | ||||||||||||||||||| ||||||||||| | |||||||| ||||||||||| | |||||||    
T  11979 agtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaatcggtaac 11880  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 382 - 484
Target Start/End: Complemental strand, 21015496 - 21015394
Alignment:
Q  382 ggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggt 481  Q
    |||||||| || |||||||||| |||| || |  | ||||||||||||||||||| ||||||||||||| ||||||||||| | ||||||| | ||||||    
T  21015496 ggcagtaatttcaaaatgtgaaattgcaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggt 21015397  T
Q  482 aac 484  Q
    |||    
T  21015396 aac 21015394  T

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Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 68 - 480
Target Start/End: Original strand, 47451954 - 47452363
Alignment:
Q  68 aagtaatcatcccttgactcgtcatacccaaaaccatataaatgatatgcatctaaattgcaatcaataagagagtttggtatatatttgtgaactccag 167  Q
    |||||||||||  || |||||||||||||||| | ||| |||| || |||||||| |||| || ||| | |||     ||||| | ||||||||||||||    
T  47451954 aagtaatcatctgttaactcgtcatacccaaaccaataaaaataatttgcatctacattggaaccaaaaggaggcaaaggtatttgtttgtgaactccag 47452053  T
Q  168 tggatggattccatagacagagacatgaaccacaactcaaaagtataaaccctctacacgaacctttaatatcaagttgtgtaaa-agactgtggaagca 266  Q
    |||||||||||||||   |||    ||||  |||||| |||||||||||||||||||| ||||||||||| ||||| | | ||   ||| || |||||||    
T  47452054 tggatggattccatatgtagatgtttgaagaacaacttaaaagtataaaccctctacatgaacctttaatttcaagat-tatactcagattggggaagca 47452152  T
Q  267 aaaaattaatattcaatgaataggaagcactatcatcgtagagtgatgtttccaaatcaatagatagagattccagatttggagttatcaatagaattct 366  Q
    |||||||||  |||  ||||   |||||||||||||| |  ||||| | ||| ||||| || ||| ||   || ||  |||  ||||| || | ||||||    
T  47452153 aaaaattaaggttcggtgaagtagaagcactatcatcattaagtgacgcttctaaatctattgatcgaacgtcaagggttgatgttataaacacaattct 47452252  T
Q  367 aggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaata 466  Q
    | ||| |||||    ||| ||||||| ||||||||  ||||| ||   ||  | ||||||||||||||||||| ||||| ||| ||||||||| || | |    
T  47452253 acgagtgtgtgc---ggcggtaagttcaaaatgtgtttttgcaaagagaggatcagagataagagaaaaccatgacttagaaatgcacttgaagcgtaca 47452349  T
Q  467 agagacttcaccgg 480  Q
    ||||||||||||||    
T  47452350 agagacttcaccgg 47452363  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 484
Target Start/End: Original strand, 11024934 - 11024997
Alignment:
Q  421 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 484  Q
    |||||||||||  |||||| ||||||||||||| |||||||| || ||||||||||||||||||    
T  11024934 agagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaac 11024997  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 480
Target Start/End: Original strand, 11006359 - 11006418
Alignment:
Q  421 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 480  Q
    |||||||||||  |||||| |||||||||| ||||||||||| ||||| |||||||||||    
T  11006359 agagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccgg 11006418  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 484
Target Start/End: Original strand, 11015922 - 11015985
Alignment:
Q  421 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 484  Q
    |||||||||||  ||| || ||||||||||||| |||||||| || ||||||||||||||||||    
T  11015922 agagataagagctaacaatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaac 11015985  T

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