View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2888-Insertion-19 (Length: 496)
Name: NF2888-Insertion-19
Description: NF2888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2888-Insertion-19 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 8 - 471
Target Start/End: Complemental strand, 42183349 - 42182880
Alignment:
| Q |
8 |
catagcttgtctttcaagctctctccattgagcacttgtgaaaggaggataccctattcctattgaagccgccattccacctgctgtgacaacaacaaac |
107 |
Q |
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| T |
42183349 |
catagcttgtctttcaagctctctccattgagcacttgtgaaaggaggataccctattcctattgaagccgccattccacctgctgtgacaaccacaaac |
42183250 |
T |
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| Q |
108 |
acaagtatgttcagacttcagaaacttgtacagaacnnnnnnngttctgatcactacttatttttctatatattattgattgatggaaaacaataagaaa |
207 |
Q |
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| T |
42183249 |
acaagtatgttcagacttcagaaacttgtacagaactttttttgttctgaccactacttatgtttctatatattattgattgatggaaaacaataagaaa |
42183150 |
T |
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| Q |
208 |
taaacacaaattaacctttgagggttgtgttggaggcagaaatgttgtgaaaaggttgaaaatttaaggatacaccgccattatcaatgatagcattagc |
307 |
Q |
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| T |
42183149 |
taaacacaaattaacctttgagggttgtgttggaggcagaaatgttgtgaaaaggttgaaaatttaaggatacaccaccattatcaatgatagcattagc |
42183050 |
T |
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| Q |
308 |
acctagagcagaagaatcacccccaaaagacatgttgtatgttgtgggaccataaccatc------agcagcagaagcagaagaagaatcatgattatga |
401 |
Q |
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| T |
42183049 |
acctagagcagaagaatcacccccaaaagacatgttgtatgttgtgggaccataaccatcagcatcagcagcagaagcagaagaagaatcatgattatga |
42182950 |
T |
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| Q |
402 |
aaaaatgaacggtggtgatgattattagagaaaccttcaaaactctgcaccgacccaacaacaatgttgg |
471 |
Q |
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| T |
42182949 |
aaaaatgaacggtggtgatgattattagagaaaccttcaaaactctgcaccgacccaacaacaatgttgg |
42182880 |
T |
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