View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2888-Insertion-20 (Length: 435)

Name: NF2888-Insertion-20
Description: NF2888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2888-Insertion-20
NF2888-Insertion-20
[»] chr2 (1 HSPs)
chr2 (8-435)||(7790979-7791406)


Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 8 - 435
Target Start/End: Complemental strand, 7791406 - 7790979
Alignment:
Q  8 gttatatgtaatatatttgtcaattaaactatgatcactcggataaatacaaactattatcttttatgatcattgtgagttcagctcaactgaacaagga 107  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||| ||||||    
T  7791406 gttatatgtaatatatttgttgattaaactatgatcactcggataaatacaaattattattttttatgatcactgtgagttcagctcaactgagcaagga 7791307  T
Q  108 ccaattgagctagttccatattttaattattttttgttttgtttcctatgtttgctttatgaaatgtatccggacagtcatacgctaattattaggatga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  7791306 ccaattgagctagttccatattttaattattttttgttttgtttcctatgtttgctttatggaatgtatccggacggtcatacgctaattattaggatga 7791207  T
Q  208 tgtgtaaggttaactcctatgattataataaattagttgaaaatgataacgcataatatatatagattatagagttttaacttagacatctcataaccac 307  Q
    |||||||| |||||||||||||||||||||||| | |  |||| ||||||||||||||||||||||| |||  ||||||||||||||| |||||||||||    
T  7791206 tgtgtaagattaactcctatgattataataaataaataaaaaaagataacgcataatatatatagatcataatgttttaacttagacacctcataaccac 7791107  T
Q  308 caaagtatttgnnnnnnnnnnnttgaaaatttgattttcttagagataaataaacataagagtggctagtagccactagttagtgatccaatggatcaac 407  Q
     ||| ||| ||           || |||| |||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  7791106 taaattatctggaaaaaaaaaatttaaaaattgattgtcttagagataaataaacataagagtggttagtagccactagtcagtgatccaatggatcaac 7791007  T
Q  408 gatcatcaatcagagacactaagacacc 435  Q
    |||||| |||| ||||||||||||||||    
T  7791006 gatcatgaatccgagacactaagacacc 7790979  T

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