View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2888-Insertion-21 (Length: 483)
Name: NF2888-Insertion-21
Description: NF2888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2888-Insertion-21 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 8 - 483
Target Start/End: Original strand, 50608855 - 50609338
Alignment:
| Q |
8 |
atttcagatatagatcatgattccaagataatgttgatgaactttttcaggtttattatcttccccgattcaattatatgatcacattgtagaaatcaaa |
107 |
Q |
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| T |
50608855 |
atttcagatatagatcatgattccaagataatgttgatgaactttttcaggtttattatcttccccaattcaattatatgatcacattgtagaaatcaaa |
50608954 |
T |
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| Q |
108 |
tcaataaaaataaatagcaaccttgtgttttcaggcacactgcatattttcttgttgctggagttgaacaaaagaatcaaagccttcacccttgcaagga |
207 |
Q |
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| T |
50608955 |
tcaataaaaataaatagcaaccttatgttttcaggcacactgcatattttcttgttgctggagttgaacaaaagaatcaaagccttcacccttgcaagga |
50609054 |
T |
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| Q |
208 |
tgcagatggaaggcatccatgtaaaaacttttagcatttttatttctgcaaaatgttgaaggatctatcaactagtattatacaatttatatagtttttc |
307 |
Q |
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| T |
50609055 |
tgcagatggaaggcatccatgtaaaaacttttagcatttttatttctgcaaaaggttgaaggatctatcaactagtattatacaatttatatagtttttc |
50609154 |
T |
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| Q |
308 |
aaatctatccggcatcaattattgttgatgatcttgtaacaaannnnnnnnattgatgttcatgtcgttgttcatatttcaaatcattcgtagcacccga |
407 |
Q |
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| T |
50609155 |
aaatctatccggcatcaattattgttgatgatcttgtaacaaattttttttattgatgttcatgtcgttgttcatatttcaaatctttcgtagcacccga |
50609254 |
T |
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| Q |
408 |
tttagacaaaactttgcaatcatgctctaaatttgctaaatgagtttgag--------acagggaccaattatatttgacatag |
483 |
Q |
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| T |
50609255 |
tttagacaaaactttgcaatcatgctctaaatttgctaaatgaatttgagacactaatacagggaccaattatatttgacatag |
50609338 |
T |
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