View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2888-Insertion-22 (Length: 314)

Name: NF2888-Insertion-22
Description: NF2888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2888-Insertion-22
NF2888-Insertion-22
[»] chr4 (1 HSPs)
chr4 (8-314)||(42553598-42553907)
[»] chr5 (5 HSPs)
chr5 (59-215)||(3021247-3021403)
chr5 (59-215)||(3038116-3038272)
chr5 (86-311)||(3030353-3030590)
chr5 (244-314)||(3021136-3021203)
chr5 (244-314)||(3038005-3038072)


Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 42553598 - 42553907
Alignment:
Q  8 ccttactgtcctcaactacggcaaatgccaaagcagcctccgccgccattttcctaatctccttcgcattgttcgtcgccggcaacgctaaccgccacgt 107  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42553598 ccttactgtccgcaactacggcaaatgccaaagcagcctccgccgccattttcctaatctccttcgcattgttcgtcgccggcaacgctaaccgccacgc 42553697  T
Q  108 agagtcagcaaaattaagacaagctgatttaccgcgaagtgccagcgcggcaacgtcgtgtgcacgtgctgccatctcaggtgttggatatgttccaagc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42553698 agagtcagcaaaattaagacaagctgatttaccgcgaagtgccagtgcggcaacgtcgtgtgcacgtgctgccatctcaggtgttggatatgttccaagc 42553797  T
Q  208 caaatcctcgtggacttgtcgttaggaacacgcacttcacaaacccac---ttgttgttgttgttccttcttcgtactcctctgtatactggatgtcttg 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42553798 caaatcctcgtggacttgtcgttaggaacacgcacttcacaaacccacttgttgttgttgttgttccttcttcgtactcctctgtatactggatgtcttg 42553897  T
Q  305 tctccttgaa 314  Q
    ||||||||||    
T  42553898 tctccttgaa 42553907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 59 - 215
Target Start/End: Complemental strand, 3021403 - 3021247
Alignment:
Q  59 tcctaatctccttcgcattgttcgtcgccggcaacgctaaccgccacgtagagtcagcaaaattaagacaagctgatttaccgcgaagtgccagcgcggc 158  Q
    |||| |||||| ||||||  |||| | ||||||||   |||||||| | |||||||||||||||||||||||||||||| ||   ||| |  || || ||    
T  3021403 tccttatctccgtcgcatcattcgactccggcaacctcaaccgccatgcagagtcagcaaaattaagacaagctgattttcctttaagagtaagtgcagc 3021304  T
Q  159 aacgtcgtgtgcacgtgctgccatctcaggtgttggatatgttccaagccaaatcct 215  Q
    ||| || ||||||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  3021303 aacatcatgtgcacgtgcagccatttcaggagttggatatgttccaagccaaatcct 3021247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 59 - 215
Target Start/End: Complemental strand, 3038272 - 3038116
Alignment:
Q  59 tcctaatctccttcgcattgttcgtcgccggcaacgctaaccgccacgtagagtcagcaaaattaagacaagctgatttaccgcgaagtgccagcgcggc 158  Q
    |||| |||||| ||||||  |||| | ||||||||   |||||||| | |||||||||||||||||||||||||||||| ||   ||| |  || || ||    
T  3038272 tccttatctccgtcgcatcattcgactccggcaacctcaaccgccatgcagagtcagcaaaattaagacaagctgattttcctttaagagtaagtgcagc 3038173  T
Q  159 aacgtcgtgtgcacgtgctgccatctcaggtgttggatatgttccaagccaaatcct 215  Q
    ||| || ||||||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  3038172 aacatcatgtgcacgtgcagccatttcaggagttggatatgttccaagccaaatcct 3038116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 86 - 311
Target Start/End: Complemental strand, 3030590 - 3030353
Alignment:
Q  86 ccggcaacgctaaccgccacgtagagtcagcaaaattaagacaagctgatttaccgcgaagtgccagcgcggcaacgtcgtgtgcacgtgctgccatctc 185  Q
    |||||||||  |||||||| | |||||||||||||||||||||||||||||| ||   ||| |  || || ||||| || ||||||||||| ||||| ||    
T  3030590 ccggcaacgtcaaccgccatgcagagtcagcaaaattaagacaagctgattttcctttaagagtaagtgcagcaacatcatgtgcacgtgcagccatttc 3030491  T
Q  186 aggtgttggatatgttccaagccaaatcctcg------tggacttgt---cgtta------ggaacacgcacttcacaaacccacttgttgttgttgttc 270  Q
    ||| |||||||||||||||||||||||||| |      ||   ||||   |||||      ||||| | ||  ||||||||||||||||| |||||   |    
T  3030490 aggagttggatatgttccaagccaaatccttgacttattgtttttgttaacgttaatattaggaactctcatctcacaaacccacttgttattgtt---c 3030394  T
Q  271 cttcttcgtactcctctgtatactggatgtcttgtctcctt 311  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  3030393 cttcttcgtactcctcggtacactggatgtcttgtctcctt 3030353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 3021203 - 3021136
Alignment:
Q  244 tcacaaacccacttgttgttgttgttccttcttcgtactcctctgtatactggatgtcttgtctccttgaa 314  Q
    ||||||||||||||||| || ||   ||| | ||||||||||| ||| || ||||||||||||||||||||    
T  3021203 tcacaaacccacttgttattctt---cctacgtcgtactcctcggtacaccggatgtcttgtctccttgaa 3021136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 3038072 - 3038005
Alignment:
Q  244 tcacaaacccacttgttgttgttgttccttcttcgtactcctctgtatactggatgtcttgtctccttgaa 314  Q
    ||||||||||||||||| || ||   ||| | ||||||||||| ||| || ||||||||||||||||||||    
T  3038072 tcacaaacccacttgttattctt---cctacgtcgtactcctcggtacaccggatgtcttgtctccttgaa 3038005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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