View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2888-Insertion-23 (Length: 342)

Name: NF2888-Insertion-23
Description: NF2888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2888-Insertion-23
NF2888-Insertion-23
[»] chr5 (5 HSPs)
chr5 (8-340)||(178601-178937)
chr5 (24-96)||(29695750-29695822)
chr5 (57-94)||(42562741-42562778)
chr5 (16-103)||(29687641-29687728)
chr5 (45-87)||(29712886-29712928)
[»] chr4 (23 HSPs)
chr4 (12-142)||(48862827-48862957)
chr4 (12-142)||(45366583-45366713)
chr4 (17-94)||(45385197-45385274)
chr4 (45-153)||(48148036-48148144)
chr4 (45-140)||(33134190-33134285)
chr4 (45-137)||(48735682-48735774)
chr4 (49-146)||(48875469-48875563)
chr4 (17-142)||(49041503-49041625)
chr4 (57-145)||(48870173-48870258)
chr4 (57-145)||(48885859-48885944)
chr4 (54-94)||(48891037-48891077)
chr4 (54-146)||(7774190-7774279)
chr4 (12-94)||(45372467-45372549)
chr4 (54-94)||(7771032-7771072)
chr4 (54-94)||(7789717-7789757)
chr4 (12-146)||(7877306-7877437)
chr4 (54-142)||(48898350-48898438)
chr4 (54-94)||(48902578-48902618)
chr4 (15-94)||(48156837-48156916)
chr4 (48-94)||(7238130-7238176)
chr4 (54-146)||(7904660-7904749)
chr4 (12-113)||(33133623-33133724)
chr4 (54-94)||(48170999-48171039)
[»] chr1 (5 HSPs)
chr1 (17-94)||(24415428-24415505)
chr1 (54-110)||(24322090-24322146)
chr1 (17-154)||(24309768-24309902)
chr1 (17-94)||(24340005-24340082)
chr1 (17-110)||(24366746-24366839)
[»] chr8 (2 HSPs)
chr8 (45-94)||(15348481-15348530)
chr8 (12-95)||(4032325-4032408)
[»] scaffold0508 (1 HSPs)
scaffold0508 (52-154)||(11888-11987)
[»] chr3 (1 HSPs)
chr3 (12-95)||(11024946-11025029)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 340
Target Start/End: Original strand, 178601 - 178937
Alignment:
Q  8 gctccctcttgaattgatcatccaaatcctacttcgcttaccagttaagtctcttattcgtttcaaatgcgtttgtaagtcttggttatatctcatctca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||     
T  178601 gctccctcttgaattgatcatccaaatcctacttcgcttaccagttaagtctcttattcgtttcaaatgtgtttgtaagtcttggttatctctcatctcc 178700  T
Q  108 aatgatacccattttgcactttcacattttcaactcacctcttcaactgcaacactcactcgtagaatcatgat-attagaccaattccatatc------ 200  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||| | |||| ||||||||||||||          
T  178701 aatgatacccattttgcactttcccattttcaactcacctcatcaactgcaacactcacttgtagaatcatgttcattacaccaattccatatcgtcatc 178800  T
Q  201 ------gtcattgtctatctattgattttgaagcatcttttaagaatgattcttcttatgcttcctccaacatttattttatgcacccccaagatcattt 294  Q
          |||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||             
T  178801 gtcattgtcattgtttatctattgattttgaagcatctcttaaggatgattcttcttatgcttcctccaacatttattttatgtaccccca--------- 178891  T
Q  295 tgatcttcaatttaaaggctcttgtagaggctttttacttcttcac 340  Q
    |||||||||||||||||  |||||||||||||||||||||||||||    
T  178892 tgatcttcaatttaaagtttcttgtagaggctttttacttcttcac 178937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 29695750 - 29695822
Alignment:
Q  24 atcatccaaatcctacttcgcttaccagttaagtctcttattcgtttcaaatgcgtttgtaagtcttggttat 96  Q
    ||||| ||||||||| |  | |||||||| ||||||||||||||||||||||||||||||||||  |||||||    
T  29695750 atcattcaaatcctattaaggttaccagtcaagtctcttattcgtttcaaatgcgtttgtaagttatggttat 29695822  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 42562778 - 42562741
Alignment:
Q  57 tctcttattcgtttcaaatgcgtttgtaagtcttggtt 94  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42562778 tctcttattcgtttcaaatgcgtttgtaagtcttggtt 42562741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 29687641 - 29687728
Alignment:
Q  16 ttgaattgatcatccaaatcctacttcgcttaccagttaagtctcttattcgtttcaaatgcgtttgtaagtcttggttatatctcat 103  Q
    ||||||||||||| |||||||| ||    |||||||| ||||||||||| || ||||| || ||||||||||||||||| | ||||||    
T  29687641 ttgaattgatcattcaaatccttctaaagttaccagtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcat 29687728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 29712928 - 29712886
Alignment:
Q  45 ttaccagttaagtctcttattcgtttcaaatgcgtttgtaagt 87  Q
    ||||| || |||||||||||||||||||| |||||||||||||    
T  29712928 ttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagt 29712886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 142
Target Start/End: Original strand, 48862827 - 48862957
Alignment:
Q  12 cctcttgaattgatcatccaaatcctacttcgcttaccagttaagtctcttattcgtttcaaatgcgtttgtaagtcttggttatatctcatctcaaatg 111  Q
    |||| |||||||||||||| |||||| ||  | ||||| || ||||||||||||||||||||||||||||| ||||||||||| | ||| |||||  |||    
T  48862827 cctcatgaattgatcatcctaatcctgctaaggttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttatctctcatg 48862926  T
Q  112 atacccattttgcactttcacattttcaact 142  Q
    || | || ||||||  |||||||||||||||    
T  48862927 atcctcactttgcaaattcacattttcaact 48862957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 45366713 - 45366583
Alignment:
Q  12 cctcttgaattgatcatccaaatcctacttcgcttaccagttaagtctcttattcgtttcaaatgcgtttgtaagtcttggttatatctcatctcaaatg 111  Q
    |||| ||||||||| ||||||||||||||  | |||||||| ||||||||||| |||||||| ||||||||||||| |||||| | ||| |||||   ||    
T  45366713 cctcatgaattgatgatccaaatcctactaaggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctctcgtg 45366614  T
Q  112 atacccattttgcactttcacattttcaact 142  Q
    || | || ||||||  |||||||||||||||    
T  45366613 attcacactttgcaaattcacattttcaact 45366583  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 45385274 - 45385197
Alignment:
Q  17 tgaattgatcatccaaatcctacttcgcttaccagttaagtctcttattcgtttcaaatgcgtttgtaagtcttggtt 94  Q
    ||||||||| ||||||||||||||  | ||||||||||||||||| || |||||||||| ||||||||||||||||||    
T  45385274 tgaattgatgatccaaatcctactaaggttaccagttaagtctctcatacgtttcaaatccgtttgtaagtcttggtt 45385197  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 153
Target Start/End: Complemental strand, 48148144 - 48148036
Alignment:
Q  45 ttaccagttaagtctcttattcgtttcaaatgcgtttgtaagtcttggttatatctcatctcaaatgatacccattttgcactttcacattttcaactca 144  Q
    |||||||| ||||||||||||||||||||||| || |||||||||||||| | ||| |||||  ||||| | || || |||  |||||||||| ||||||    
T  48148144 ttaccagtgaagtctcttattcgtttcaaatgtgtctgtaagtcttggttttctcttatctctcatgatcctcacttcgcaaattcacattttgaactca 48148045  T
Q  145 cctcttcaa 153  Q
    || ||||||    
T  48148044 ccgcttcaa 48148036  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 33134285 - 33134190
Alignment:
Q  45 ttaccagttaagtctcttattcgtttcaaatgcgtttgtaagtcttggttatatctcatctcaaatgatacccattttgcactttcacattttcaa 140  Q
    ||||| || ||||||||||||||||||||||||||||||||| |||| || | ||| ||||| |||||| | || ||||||  |||||||||||||    
T  33134285 ttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagccttgattttctcttatctctaatgatcctcactttgcaaattcacattttcaa 33134190  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 48735774 - 48735682
Alignment:
Q  45 ttaccagttaagtctcttattcgtttcaaatgcgtttgtaagtcttggttatatctcatctcaaatgatacccattttgcactttcacatttt 137  Q
    ||||| || ||||||||||||||||||||||| ||||||||||||||||| | ||| |||||   ||||||  ||||||||  ||||||||||    
T  48735774 ttaccggtgaagtctcttattcgtttcaaatgtgtttgtaagtcttggttttctcttatctcctgtgatactgattttgcaaattcacatttt 48735682  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 48875469 - 48875563
Alignment:
Q  49 cagttaagtctcttattcgtttcaaatgcgtttgtaagtcttggttatatctcatctcaaatgatacccattttgcactttcacattttcaactcacc 146  Q
    |||| |||||||| |||||||||||||||||||| ||||||||||| | |||||||||    ||  |||||||| ||  |||||||||||||||||||    
T  48875469 cagtcaagtctctaattcgtttcaaatgcgtttgcaagtcttggttttctctcatctc---cgaaccccattttacaaattcacattttcaactcacc 48875563  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 49041625 - 49041503
Alignment:
Q  17 tgaattgatcatccaaatcctacttcgcttaccagttaagtctcttattcgtttcaaatgcgtttgtaagtcttggttatatctcatctcaaatgatacc 116  Q
    |||||||||||||| ||| ||| |  | || ||||| |||||||||||| |||||||||||||||| ||||||||||| | ||| |||||   |||| ||    
T  49041625 tgaattgatcatcctaattctaatgagattgccagtgaagtctcttatttgtttcaaatgcgtttgcaagtcttggttttctcttatctc---tgatccc 49041529  T
Q  117 cattttgcactttcacattttcaact 142  Q
    |||||||||  ||| |||||| ||||    
T  49041528 cattttgcaaattctcatttttaact 49041503  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 145
Target Start/End: Original strand, 48870173 - 48870258
Alignment:
Q  57 tctcttattcgtttcaaatgcgtttgtaagtcttggttatatctcatctcaaatgatacccattttgcactttcacattttcaactcac 145  Q
    |||||||||||||||||||||||||||||||||||||| | ||| |||||    ||| ||| |||||||  |||||||||||| |||||    
T  48870173 tctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctc---cgatcccctttttgcaaattcacattttcatctcac 48870258  T

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Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 145
Target Start/End: Original strand, 48885859 - 48885944
Alignment:
Q  57 tctcttattcgtttcaaatgcgtttgtaagtcttggttatatctcatctcaaatgatacccattttgcactttcacattttcaactcac 145  Q
    |||||||||||||||||||||||||||||||||||||| | ||| |||||    ||| ||| |||||||  |||||||||||| |||||    
T  48885859 tctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctc---cgatcccctttttgcaaattcacattttcatctcac 48885944  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 48891037 - 48891077
Alignment:
Q  54 aagtctcttattcgtttcaaatgcgtttgtaagtcttggtt 94  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  48891037 aagtctcttatacgtttcaaatgcgtttgtaagtcttggtt 48891077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 7774279 - 7774190
Alignment:
Q  54 aagtctcttattcgtttcaaatgcgtttgtaagtcttggttatatctcatctcaaatgatacccattttgcactttcacattttcaactcacc 146  Q
    ||||||||||||| ||||||||| |||||||||   ||||| | ||| |||||   |||| |||||||||||  |||||||||||||||||||    
T  7774279 aagtctcttattcatttcaaatgtgtttgtaagctatggttttctcttatctc---tgatccccattttgcaaattcacattttcaactcacc 7774190  T

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Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 45372549 - 45372467
Alignment:
Q  12 cctcttgaattgatcatccaaatcctacttcgcttaccagttaagtctcttattcgtttcaaatgcgtttgtaagtcttggtt 94  Q
    |||| ||||||||| || ||||| |||||  | || || || ||||||||||| ||||||||||| |||||||||||||||||    
T  45372549 cctcatgaattgatgattcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggtt 45372467  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 7771032 - 7771072
Alignment:
Q  54 aagtctcttattcgtttcaaatgcgtttgtaagtcttggtt 94  Q
    |||||||||||  ||||||||||||||||||||||||||||    
T  7771032 aagtctcttatatgtttcaaatgcgtttgtaagtcttggtt 7771072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 7789717 - 7789757
Alignment:
Q  54 aagtctcttattcgtttcaaatgcgtttgtaagtcttggtt 94  Q
    |||||||||||  ||||||||||||||||||||||||||||    
T  7789717 aagtctcttatatgtttcaaatgcgtttgtaagtcttggtt 7789757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 7877306 - 7877437
Alignment:
Q  12 cctcttgaattgatcatccaaatcctacttcgcttaccagttaagtctcttattcgtttcaaatgcgtttgtaagtcttggttatatctcatctcaaatg 111  Q
    |||| ||||||||| |||||||||||  || | || |  || ||||||||||| |||||||||||| ||||||||   ||||| | ||| |||||   ||    
T  7877306 cctcatgaattgattatccaaatcctgatttggttgctggtgaagtctcttatacgtttcaaatgcatttgtaagctatggttttctcttatctc---tg 7877402  T
Q  112 atacccattttgcactttcacattttcaactcacc 146  Q
    || || ||||||||  |||||||||||||||||||    
T  7877403 atcccaattttgcaaattcacattttcaactcacc 7877437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 142
Target Start/End: Original strand, 48898350 - 48898438
Alignment:
Q  54 aagtctcttattcgtttcaaatgcgtttgtaagtcttggttatatctcatctcaaatgatacccattttgcactttcacattttcaact 142  Q
    ||||||||||  |||||||| || ||||||||||||||||| |  || |||||  ||||| |||| ||||||  |||||||||||||||    
T  48898350 aagtctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctctcatgatgcccactttgcaaattcacattttcaact 48898438  T

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Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 48902578 - 48902618
Alignment:
Q  54 aagtctcttattcgtttcaaatgcgtttgtaagtcttggtt 94  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  48902578 aagtctctcattcgtttcaaatgtgtttgtaagtcttggtt 48902618  T

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Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 48156916 - 48156837
Alignment:
Q  15 cttgaattgatcatccaaatcctacttcgcttaccagttaagtctcttattcgtttcaaatgcgtttgtaagtcttggtt 94  Q
    ||||||||||| || ||||||||  |  | ||||| || ||||||||| | |||||||| ||||||||||||||||||||    
T  48156916 cttgaattgataattcaaatccttttatggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggtt 48156837  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 7238176 - 7238130
Alignment:
Q  48 ccagttaagtctcttattcgtttcaaatgcgtttgtaagtcttggtt 94  Q
    ||||| |||||||||||  |||||||||| |||||||||||||||||    
T  7238176 ccagtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggtt 7238130  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 7904660 - 7904749
Alignment:
Q  54 aagtctcttattcgtttcaaatgcgtttgtaagtcttggttatatctcatctcaaatgatacccattttgcactttcacattttcaactcacc 146  Q
    ||||||||||| ||||||||||| ||||||||||  ||||| | ||| |||||   |||| | || ||||||  |||||||||||||||||||    
T  7904660 aagtctcttatacgtttcaaatgtgtttgtaagttatggttttctcttatctc---tgatcctcactttgcaaattcacattttcaactcacc 7904749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 33133623 - 33133724
Alignment:
Q  12 cctcttgaattgatcatccaaatcctacttcgcttaccagttaagtctcttattcgtttcaaatgcgtttgtaagtcttggttatatctcatctcaaatg 111  Q
    |||| ||||||||||||||  || || ||  | |||||| | |||||||||||||||||||||| | ||||||||  |||||| | ||| ||||| ||||    
T  33133623 cctcatgaattgatcatccttattctgctaaggttaccaatgaagtctcttattcgtttcaaattcatttgtaagctttggttttctcttatctctaatg 33133722  T
Q  112 at 113  Q
    ||    
T  33133723 at 33133724  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 48171039 - 48170999
Alignment:
Q  54 aagtctcttattcgtttcaaatgcgtttgtaagtcttggtt 94  Q
    ||||||||| | ||||||||||| |||||||||||||||||    
T  48171039 aagtctcttctacgtttcaaatgtgtttgtaagtcttggtt 48170999  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 24415428 - 24415505
Alignment:
Q  17 tgaattgatcatccaaatcctacttcgcttaccagttaagtctcttattcgtttcaaatgcgtttgtaagtcttggtt 94  Q
    ||||||||||| |||||||||| |  | ||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  24415428 tgaattgatcacccaaatcctattgagattaccggttaagtctcttattcgtttcaaatgcgttcgtaagtcttggtt 24415505  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 24322090 - 24322146
Alignment:
Q  54 aagtctcttattcgtttcaaatgcgtttgtaagtcttggttatatctcatctcaaat 110  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||    
T  24322090 aagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctcaaat 24322146  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 24309768 - 24309902
Alignment:
Q  17 tgaattgatcatccaaatcctacttcgcttaccagttaagtctcttattcgtttcaaatgcgtttgtaagtcttggttatatctcatctcaaatgatacc 116  Q
    ||||||||||| | ||||| || |  | ||||| ||||||||||||||||||||||||| |||||||||||  ||||| | ||| |||||   |||| |     
T  24309768 tgaattgatcaccaaaatcttagtaagattaccggttaagtctcttattcgtttcaaatccgtttgtaagttatggttttctcttatctc---tgattct 24309864  T
Q  117 cattttgcactttcacattttcaactcacctcttcaac 154  Q
    || ||||||  ||||||||||||||| || ||||||||    
T  24309865 cactttgcaaattcacattttcaacttacttcttcaac 24309902  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 24340005 - 24340082
Alignment:
Q  17 tgaattgatcatccaaatcctacttcgcttaccagttaagtctcttattcgtttcaaatgcgtttgtaagtcttggtt 94  Q
    ||||||||||| | ||||| || |  | ||||| |||||||||||||||||||||||||  ||||||||||| |||||    
T  24340005 tgaattgatcaccaaaatcttagtaaggttaccggttaagtctcttattcgtttcaaatctgtttgtaagtcatggtt 24340082  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 24366746 - 24366839
Alignment:
Q  17 tgaattgatcatccaaatcctacttcgcttaccagttaagtctcttattcgtttcaaatgcgtttgtaagtcttggttatatctcatctcaaat 110  Q
    ||||||||| | ||||||||| ||  | ||||||||| |  |||| |||||||||||||| ||||| ||||| ||||| | ||| |||||||||    
T  24366746 tgaattgattacccaaatcctgctgaggttaccagttgaaactctgattcgtttcaaatgtgtttgcaagtcatggttttctcttatctcaaat 24366839  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 15348481 - 15348530
Alignment:
Q  45 ttaccagttaagtctcttattcgtttcaaatgcgtttgtaagtcttggtt 94  Q
    ||||| || ||||||||||| |||||||||||||||||||||||||||||    
T  15348481 ttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggtt 15348530  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 4032408 - 4032325
Alignment:
Q  12 cctcttgaattgatcatccaaatcctacttcgcttaccagttaagtctcttattcgtttcaaatgcgtttgtaagtcttggtta 95  Q
    |||| ||||||||||||||||||| ||||  |  ||||| | ||||||||||| |||||||| || |||||||| |||||||||    
T  4032408 cctcatgaattgatcatccaaatcttactgagactaccaatgaagtctcttatacgtttcaagtgtgtttgtaaatcttggtta 4032325  T

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Target: scaffold0508 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 154
Target Start/End: Original strand, 11888 - 11987
Alignment:
Q  52 ttaagtctcttattcgtttcaaatgcgtttgtaagtcttggttatatctcatctcaaatgatacccattttgcactttcacattttcaactcacctcttc 151  Q
    ||||||||||||| |||||||||| |||||||||||| ||||| | ||| |||||   |||||  || ||||||  ||||||||||||||| || |||||    
T  11888 ttaagtctcttatccgtttcaaatccgtttgtaagtcatggttttctcttatctc---tgataatcactttgcaaattcacattttcaacttacttcttc 11984  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 11025029 - 11024946
Alignment:
Q  12 cctcttgaattgatcatccaaatcctacttcgcttaccagttaagtctcttattcgtttcaaatgcgtttgtaagtcttggtta 95  Q
    |||| |||||||||||| |||||| |  |  | ||||| || |||||||| || ||||||||||||||||||||||| ||||||    
T  11025029 cctcatgaattgatcatacaaatcatgttgaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcatggtta 11024946  T

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