View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2888-Insertion-24 (Length: 378)
Name: NF2888-Insertion-24
Description: NF2888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2888-Insertion-24 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 373
Target Start/End: Original strand, 39979232 - 39979598
Alignment:
| Q |
8 |
tttatagccaaaatactaagacctgataggtgaggaggtagttgagcatggtaaatgaaatttaatttctttgcagagcttgctagtcttgctgtcatca |
107 |
Q |
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| T |
39979232 |
tttatagccaaaatactaagacctgataggtgaggaggtagttgagcatggtaaatgatatttaatttctttgcagagcttgctagtcttgctgtcatca |
39979331 |
T |
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| Q |
108 |
tatcagacacattactaccaaagacagtatatataaagtacnnnnnnnncttcaaactggcgtannnnnnnnatattaactctttgttctcgac-gaaaa |
206 |
Q |
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| T |
39979332 |
tatcagacacattactaccaaagacagtatatataaagtacttttttttcttcaaactggcgtattttttttatattaactctttgttctcaaccggaaa |
39979431 |
T |
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| Q |
207 |
aggaccatggtaatctgaaattcgactgtgtggtaagtaagattagtcaagaattattctacacaaaaatcgaactcaagttcatttgaactatttgttt |
306 |
Q |
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| T |
39979432 |
aggaccatggtaatctgaaatttgactgtgtggtaagtaagtttagtcaagaattattctacacaaaaatcgaactcaagttcatttgaactattcgttt |
39979531 |
T |
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| Q |
307 |
ttggtgtagttcattaatcacttatctgattaacttaactcgcgtatatacacacacgtatgtataa |
373 |
Q |
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| T |
39979532 |
ttggtgtagtttattaatcacttatctgattaacttaactcgcgtatatatacacacgtatgtataa |
39979598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 29610354 - 29610390
Alignment:
| Q |
253 |
tcaagaattattctacacaaaaatcgaactcaagttc |
289 |
Q |
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| T |
29610354 |
tcaagaattattgcacacaaaaatcgaactcaagttc |
29610390 |
T |
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