View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2888-Insertion-25 (Length: 358)

Name: NF2888-Insertion-25

Description: NF2888

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF2888-Insertion-25

[»] chr7 (2 HSPs)

Target: chr7 (Bit Score: 163; Significance: 5e-87; HSPs: 2)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 163; E-Value: 5e-87

Query Start/End: Original strand, 124 - 358

Target Start/End: Original strand, 35420987 - 35421220

Alignment:

Q	124	gtgttgttggatcttctgtgtttctgttagcaactattgttgttgtttttgaggctgaacaacccatgtttaagttaagaaaattgggttgtgtttactt	223	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35420987	gtgttgttggatcttctgtgtttctgttagcaactattgttgttgtttttgaggctgaacaacccatgtttaagttaagaaaattgggttgtgtttactt	35421086	T

Q	224	ttgcaacctctctctagaatagaaaagataccnnnnnnnnnnnnnnnnnnnnggtgggtgaatttctattttagaggaccattttgcactaatgaatgat	323	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35421087	ttgcaacctctctctagaatagaaaagatacctttttatatttttattttttggtgggtgaatttctattttagaggaccattttgcactaatgaatgat	35421186	T

Q	324	tgttcttatgaggaagaggatttgtataggtatta	358	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	35421187	tgttcttatgaggaagagga-atgtataggtatta	35421220	T

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Target: chr7; HSP #2

Raw Score: 42; E-Value: 0.000000000000009

Query Start/End: Original strand, 8 - 49

Target Start/End: Original strand, 35420871 - 35420912

Alignment:

Q	8	gataagaggcattgtaagggacaaagcttttctaactggtgg	49	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35420871	gataagaggcattgtaagggacaaagcttttctaactggtgg	35420912	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]