View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2888-Insertion-27 (Length: 252)
Name: NF2888-Insertion-27
Description: NF2888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2888-Insertion-27 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 2489720 - 2489964
Alignment:
| Q |
8 |
gctggagcaagtttcattaatgtatccatgtctaccatcacttctaaatggtttggtgaagacgagaagaatgtccgagctttattcacactggcagcca |
107 |
Q |
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| T |
2489720 |
gctggagcaagtttcattaatgtatccatgtctaccatcacttctaaatggtttggtgaagacgagaagaatgtccgagctttattcacactggcagcca |
2489819 |
T |
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| Q |
108 |
aggtctccccaactattatatttgtcgatgaggttgacagtatgcttgggcagcgaacaagagttggggaacatgaagccatgcggaaaataaagaatga |
207 |
Q |
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| T |
2489820 |
aggtctccccaactattatatttgtcgatgaggttgacagtatgcttgggcagcgaacaagagttggggaacatgaagccatgcggaaaataaagaatga |
2489919 |
T |
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| Q |
208 |
attcatgtccaattgggatggacttacctcgaaatcagaggatcg |
252 |
Q |
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| T |
2489920 |
attcatgtccaattgggatggacttacctcgaaatcagaggatcg |
2489964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 41591267 - 41591049
Alignment:
| Q |
7 |
agctggagcaagtttcattaatgtatccatgtctaccatcacttctaaatggtttggtgaagacgagaagaatgtccgagctttattcacactggcagcc |
106 |
Q |
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| T |
41591267 |
agctggagcaagtttcattaatgtgtccatgtctaccatcacttctaaatggtttggtgaagatgagaagaatgttcgcgctttattcacacttgcatcc |
41591168 |
T |
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| Q |
107 |
aaggtctccccaactattatatttgtcgatgaggttgacagtatgcttgggcagcgaacaagagttggggaacatgaagccatgcggaaaataaagaatg |
206 |
Q |
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| T |
41591167 |
aaagtctccccaactattatatttgtcgatgaggttgatagcatgcttgggcaacgaacaagagttggggagcatgaagccatgcggaaaataaagaatg |
41591068 |
T |
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| Q |
207 |
aattcatgtccaattggga |
225 |
Q |
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| T |
41591067 |
aatttatgtcccattggga |
41591049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 11094662 - 11094442
Alignment:
| Q |
11 |
ggagcaagtttcattaatgtatccatgtctaccatcacttctaaatggtttggtgaagacgagaagaatgtccgagctttattcacactggcagccaagg |
110 |
Q |
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| T |
11094662 |
ggagcaagtttcattaacgtctcgatgtccacgatcacttcaaaatggttcggagaagatgaaaagaatgtccgagctttgttcacgctagcagctaagg |
11094563 |
T |
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| Q |
111 |
tctccccaactattatatttgtcgatgaggttgacagtatgcttgggcagcgaacaagagttggggaacatgaagccatgcggaaaataaagaatgaatt |
210 |
Q |
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| T |
11094562 |
ttgctccgactattatattcgtcgatgaagttgacagcatgctcggtcagcgtactagagtcggagaacatgaggccatgaggaagattaaaaatgaatt |
11094463 |
T |
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| Q |
211 |
catgtccaattgggatggact |
231 |
Q |
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| T |
11094462 |
catgacacattgggatggact |
11094442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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