View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2888-Insertion-3 (Length: 836)
Name: NF2888-Insertion-3
Description: NF2888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2888-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 562 - 811
Target Start/End: Original strand, 1824775 - 1825024
Alignment:
| Q |
562 |
ctataaataagtgtagatgtgaaattgatggggacatgatattactcgtttttcatgctattttgatatcagccgttggatcaatgttttggaatgggac |
661 |
Q |
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| T |
1824775 |
ctataaataaatgtagatgtgaaattgatggggacatgatattgctcgtttttcatgctattttgatatcagccgttggatcaatgttttggaatgggac |
1824874 |
T |
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| Q |
662 |
catgtgtgaatgagggacatctatgactatgagacccatagagtagagggaaaaactgacctagacaagttgtattcacactgaattatcatcactttgt |
761 |
Q |
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| T |
1824875 |
catgtgtgaatgagggacatctataactatgagacccatagagcagagggaaagactgacctagacaagttgtattcacactgaattatcatcactttgt |
1824974 |
T |
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| Q |
762 |
tacactgaattatgcaaaaatacaagtggtggagaatcaccttttttgat |
811 |
Q |
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| T |
1824975 |
aacactgaattatgcaaaaatacaagtggtggagaatcaccttttttgat |
1825024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 115 - 426
Target Start/End: Original strand, 1824266 - 1824570
Alignment:
| Q |
115 |
agacacaattgagtttgaactgttactcttaaccatgttcccaacaacctcaacaccaccgttaacattaacggtaacaaaatcggtttgaacatgaaaa |
214 |
Q |
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| T |
1824266 |
agacacaattgagtttgaactcttactcttaaccgtgttcccaacaacctcaacaccaccgttaacattaacggtaacagtatcagtttgaacatgaaaa |
1824365 |
T |
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| Q |
215 |
aatgaatgatcactttgatcatattctgaagagattaaaccttctggtgtttgtaacaaaatctctctaagaaaatcatcaccatcaatgttaaggttgt |
314 |
Q |
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| T |
1824366 |
aatgaatgatcacttt---------ctgaagagattaaaccttctggtgtttgtaataaaatctctctaataaaatcatcaccatcaatgttaaggttgt |
1824456 |
T |
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| Q |
315 |
tacaatcatttacgaaataatcatcaccacaacccaattcctacaacaattaattca--tttttcatcacaaaatcatatacagtgtgacaaataacaga |
412 |
Q |
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| T |
1824457 |
tacaatcatctatgaaataatcatcaccacaatccaattcctacaacaattaattcattttttttataacaaaattatatacagtgtgacaaataacaga |
1824556 |
T |
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| Q |
413 |
aataattaaagtat |
426 |
Q |
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| T |
1824557 |
aataattaaagtat |
1824570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 439 - 551
Target Start/End: Original strand, 1824605 - 1824727
Alignment:
| Q |
439 |
ttaccatgtcaagatgaaaattttcccatgattcctccattggaaaattgaattga----------gcaaagttttgtgtttgtgttgtgatgtttttta |
528 |
Q |
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| T |
1824605 |
ttaccatgtcaagatgaaaattttcccatgactcctccattggaaaattgaattgagctaacttgagcaaagttttgtgtttgtcttgtgatgtttttta |
1824704 |
T |
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| Q |
529 |
tttgcacaagaggaataataatg |
551 |
Q |
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| T |
1824705 |
tttgcacaagaggaataataatg |
1824727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 1824174 - 1824230
Alignment:
| Q |
8 |
aaaatatatgtctttggagaagaacttttacgaggaacccttttcgatttcaaacca |
64 |
Q |
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| T |
1824174 |
aaaatatatgtctttggagaagaacttttacgaggaacctttttcgatttcaaacca |
1824230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 115 - 193
Target Start/End: Original strand, 1841566 - 1841644
Alignment:
| Q |
115 |
agacacaattgagtttgaactgttactcttaaccatgttcccaacaacctcaacaccaccgttaacattaacggtaaca |
193 |
Q |
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| T |
1841566 |
agacacgattgagtttgaactgttacttttgatcatgttcccaacaaactcaacaccaccgttaacgttaacagtaaca |
1841644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 1841474 - 1841530
Alignment:
| Q |
8 |
aaaatatatgtctttggagaagaacttttacgaggaacccttttcgatttcaaacca |
64 |
Q |
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| T |
1841474 |
aaaatatatgtctttggagaagaacttctccgaggaacctttttcgatttcaaacca |
1841530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 642 - 685
Target Start/End: Original strand, 1824735 - 1824778
Alignment:
| Q |
642 |
tcaatgttttggaatgggaccatgtgtgaatgagggacatctat |
685 |
Q |
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| T |
1824735 |
tcaatgttttggaatgggaccatgtgtgaatgagggacatctat |
1824778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 1841725 - 1841773
Alignment:
| Q |
328 |
gaaataatcatcaccacaacccaattcctacaacaattaattcattttt |
376 |
Q |
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| T |
1841725 |
gaaataatcatcaccacaatccaattcctacaacaattcattaattttt |
1841773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 775 - 827
Target Start/End: Original strand, 1842192 - 1842244
Alignment:
| Q |
775 |
gcaaaaatacaagtggtggagaatcaccttttttgatcaaacagacatatttt |
827 |
Q |
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| T |
1842192 |
gcaaaaatacaagtggtggagaatcacttttttggatcaaacaaacacatttt |
1842244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 439 - 485
Target Start/End: Original strand, 1841860 - 1841906
Alignment:
| Q |
439 |
ttaccatgtcaagatgaaaattttcccatgattcctccattggaaaa |
485 |
Q |
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| T |
1841860 |
ttaccgtgtcaagatgaaaattttcccaggactcttccattggaaaa |
1841906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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