View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2888-Insertion-36 (Length: 96)

Name: NF2888-Insertion-36
Description: NF2888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2888-Insertion-36
NF2888-Insertion-36
[»] chr7 (2 HSPs)
chr7 (8-96)||(34566385-34566473)
chr7 (8-78)||(34371745-34371815)
[»] chr5 (1 HSPs)
chr5 (8-79)||(15896075-15896146)


Alignment Details
Target: chr7 (Bit Score: 85; Significance: 4e-41; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 4e-41
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 34566385 - 34566473
Alignment:
Q  8 caactgtcacaattgcaagaggcaagccaccacattcccttgcaacctcacttgctattgggttgatatcatatgtatctacaattcca 96  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34566385 caactgtcacaattgcaagaggcaagccaccacattcctttgcaacctcacttgctattgggttgatatcatatgtatctacaattcca 34566473  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 8e-21
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 34371815 - 34371745
Alignment:
Q  8 caactgtcacaattgcaagaggcaagccaccacattcccttgcaacctcacttgctattgggttgatatca 78  Q
    |||||||  |||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  34371815 caactgttgcaattgcaaggggcaaaccaccacattcccttgcaacctcacttgctattggattgatatca 34371745  T

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Target: chr5 (Bit Score: 52; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 15896075 - 15896146
Alignment:
Q  8 caactgtcacaattgcaagaggcaagccaccacattcccttgcaacctcacttgctattgggttgatatcat 79  Q
    ||||||||||||||||||| ||||||||||||||| || |||||||||| ||||||||||| ||||||||||    
T  15896075 caactgtcacaattgcaaggggcaagccaccacatgcctttgcaacctctcttgctattggattgatatcat 15896146  T

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