View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2888-Insertion-6 (Length: 700)

Name: NF2888-Insertion-6
Description: NF2888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2888-Insertion-6
NF2888-Insertion-6
[»] chr8 (11 HSPs)
chr8 (237-523)||(42899145-42899433)
chr8 (564-700)||(42899474-42899610)
chr8 (8-163)||(42898955-42899110)
chr8 (133-224)||(478172-478264)
chr8 (8-60)||(40589105-40589157)
chr8 (100-198)||(13414964-13415068)
chr8 (8-60)||(478446-478498)
chr8 (166-233)||(7127236-7127303)
chr8 (133-233)||(8451230-8451331)
chr8 (100-198)||(23853873-23853977)
chr8 (133-198)||(40588872-40588938)
[»] chr1 (10 HSPs)
chr1 (100-229)||(44527194-44527329)
chr1 (100-233)||(36733637-36733776)
chr1 (8-60)||(4394904-4394956)
chr1 (8-60)||(5609084-5609136)
chr1 (8-60)||(44527010-44527062)
chr1 (100-224)||(48166178-48166308)
chr1 (133-233)||(5609318-5609419)
chr1 (165-233)||(44602764-44602832)
chr1 (8-60)||(36733438-36733490)
chr1 (8-60)||(51113060-51113112)
[»] chr3 (6 HSPs)
chr3 (100-229)||(53496973-53497108)
chr3 (8-60)||(53496789-53496841)
chr3 (164-233)||(11020287-11020356)
chr3 (107-198)||(27941136-27941233)
chr3 (100-222)||(55199452-55199580)
chr3 (166-228)||(2615506-2615568)
[»] chr4 (23 HSPs)
chr4 (100-190)||(41835461-41835557)
chr4 (131-233)||(49951290-49951393)
chr4 (134-233)||(2064833-2064933)
chr4 (133-228)||(51735083-51735179)
chr4 (100-229)||(21321468-21321603)
chr4 (8-60)||(21321272-21321324)
chr4 (100-233)||(18442252-18442391)
chr4 (166-233)||(37245959-37246026)
chr4 (100-233)||(55734950-55735089)
chr4 (100-225)||(56065570-56065701)
chr4 (133-233)||(29655773-29655874)
chr4 (8-60)||(51259920-51259972)
chr4 (8-60)||(56065374-56065426)
chr4 (166-228)||(28426196-28426258)
chr4 (166-228)||(49119512-49119574)
chr4 (8-60)||(29656055-29656107)
chr4 (100-194)||(43840453-43840553)
chr4 (8-60)||(55734754-55734806)
chr4 (8-60)||(18442534-18442586)
chr4 (456-500)||(19386499-19386543)
chr4 (8-60)||(28538175-28538227)
chr4 (177-233)||(47226437-47226493)
chr4 (8-60)||(49951058-49951110)
[»] chr5 (15 HSPs)
chr5 (100-229)||(4268040-4268175)
chr5 (100-233)||(15988856-15988995)
chr5 (134-233)||(25730788-25730888)
chr5 (8-60)||(15989139-15989191)
chr5 (100-229)||(11375624-11375759)
chr5 (100-228)||(22767369-22767503)
chr5 (8-60)||(20204700-20204752)
chr5 (8-60)||(25730586-25730638)
chr5 (167-233)||(41940843-41940909)
chr5 (8-60)||(4267856-4267908)
chr5 (133-228)||(27292413-27292509)
chr5 (17-60)||(8387840-8387883)
chr5 (100-233)||(12660257-12660396)
chr5 (165-223)||(8388098-8388156)
chr5 (8-60)||(27533297-27533349)
[»] chr2 (11 HSPs)
chr2 (137-229)||(12130749-12130842)
chr2 (8-60)||(88304-88356)
chr2 (100-228)||(34696016-34696148)
chr2 (100-228)||(34718428-34718560)
chr2 (100-194)||(44017464-44017564)
chr2 (166-229)||(88572-88635)
chr2 (164-229)||(18345598-18345662)
chr2 (8-60)||(34696292-34696344)
chr2 (8-60)||(34718704-34718756)
chr2 (165-223)||(9709941-9709999)
chr2 (8-60)||(18345864-18345916)
[»] chr7 (9 HSPs)
chr7 (106-191)||(29201104-29201197)
chr7 (8-60)||(17877162-17877214)
chr7 (8-60)||(22288986-22289038)
chr7 (167-228)||(9328714-9328775)
chr7 (133-233)||(16731912-16732013)
chr7 (133-233)||(17710046-17710147)
chr7 (8-60)||(1581360-1581412)
chr7 (8-60)||(16731678-16731730)
chr7 (8-60)||(17709812-17709864)
[»] chr6 (10 HSPs)
chr6 (100-211)||(15053304-15053421)
chr6 (8-60)||(19364335-19364387)
chr6 (100-233)||(15606101-15606240)
chr6 (8-60)||(29368426-29368478)
chr6 (134-188)||(11731818-11731873)
chr6 (133-223)||(28107118-28107209)
chr6 (167-229)||(14680176-14680238)
chr6 (167-229)||(29368167-29368229)
chr6 (133-198)||(30802133-30802199)
chr6 (11-59)||(11732041-11732089)
[»] scaffold0446 (1 HSPs)
scaffold0446 (133-225)||(165-258)


Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 237 - 523
Target Start/End: Original strand, 42899145 - 42899433
Alignment:
Q  237 gattgtattcgagtccgactcatctattctccaatgcaactctatagtctcaagatcatgattatttaaaa--ttgttattgttcatgtttcaagaatta 334  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||  || || |||||| ||||||||| ||||    
T  42899145 gattgtattcgagtccgactcatctactctccaatgcaactctatcgtctcaaggtcatgattatttaaaaaattcttgttgttcctgtttcaagtatta 42899244  T
Q  335 tttatcagtaatctttacctttcaccttggaatactttagctatttgagacaagggaatgggttgttcacactttagctagaaaaccagagatccatcca 434  Q
    ||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42899245 tttatcaatcatctttacctttcaccttcgaatactttagctatttgagacaagggaatgggttgttcacactttagctagaaaaccagagatccatcca 42899344  T
Q  435 tccacgaaaacaaaatagaaacactgatcacaactgggcggaaaacgcagacggacttgctcatcgggcgcggttaacagtgagttcaa 523  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42899345 tccacgaaaacaacatagaaacactgatcacaactgggcggaaaacgcagacggacttgctcatcgggcgcggttaacagtgagttcaa 42899433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 564 - 700
Target Start/End: Original strand, 42899474 - 42899610
Alignment:
Q  564 tgtatctcgcacgaggatacaattccatcgcgatttgtgacgcaccagagcagagctccactacgcacttcatttcacaacattttattgcttacattgc 663  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42899474 tgtatctcgcacgaggatacaattccatcgcgatttgtgacgcaccagagcagagctccactacgcacttcatttcacaacattttattgcttacattgc 42899573  T
Q  664 ttttttcttatgttcctcactctgcaatttttcaatg 700  Q
    |||||||||||||||||||||||||||||||||||||    
T  42899574 ttttttcttatgttcctcactctgcaatttttcaatg 42899610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 42898955 - 42899110
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatgtggatgtggttgaagtgcaatgtggatgttccatgacagttacaact 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42898955 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatgtggatgtggttgaagtgcaatgtggatgttccatgaccgttacaact 42899054  T
Q  108 tttgcgtgttgtattagagactcgccaatttatacgggctcaaacaagatgacagc 163  Q
    ||||| |||||| ||||||||||| |||||||||||||||||||||| ||||||||    
T  42899055 tttgcatgttgtgttagagactcggcaatttatacgggctcaaacaaaatgacagc 42899110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 133 - 224
Target Start/End: Complemental strand, 478264 - 478172
Alignment:
Q  133 caatttatacgggctcaaacaagatgacagcga-caaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgct 224  Q
    |||||||| ||||||||||||| ||| || ||  |||||||||||||||||||||||||| ||||||  |||||| ||||  |||||||||||    
T  478264 caatttatccgggctcaaacaaaatggcaacgggcaaatatgacagttttggagggggaggcagtagccttactcgatgccattcactttgct 478172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 40589157 - 40589105
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||| |||||    
T  40589157 catcatacttcaacaagcattgggaggacgacactagatgcatggcaacaatg 40589105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 198
Target Start/End: Original strand, 13414964 - 13415068
Alignment:
Q  100 ttacaacttttgcgtgttgtattagagact--cgc---caatttatacgggctcaaacaagatgacagcg-acaaatatgacagttttggagggggagac 193  Q
    |||||||||||| ||||| | |||||||||  |||   |||||||| ||||||||||| | ||| ||||| ||||||||||||||||||||||||||| |    
T  13414964 ttacaacttttgtgtgtttttttagagactttcgcgggcaatttattcgggctcaaacgaaatggcagcggacaaatatgacagttttggagggggaggc 13415063  T
Q  194 agtag 198  Q
    |||||    
T  13415064 agtag 13415068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 478498 - 478446
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    |||||||| ||||| |||||||| |||||| ||||||||||||||||||||||    
T  478498 catcatacttcaacaagcattggaaggacggcactagatgcatggcagcaatg 478446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 7127236 - 7127303
Alignment:
Q  166 caaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgctgatgcgaac 233  Q
    ||||||||| ||||||||||||||||  |||||  |||||| ||||| ||||||||||||||| ||||    
T  7127236 caaatatgaaagttttggagggggaggtagtagccttactcgatgctattcactttgctgatgtgaac 7127303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 233
Target Start/End: Complemental strand, 8451331 - 8451230
Alignment:
Q  133 caatttatacgggctcaaacaagatgacagcga-caaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgctgatgcga 231  Q
    |||||||| ||||||||||||| | |  ||||  ||||||||||||| |||||||||||| |||||| ||||||| || |  ||||||| ||||||| ||    
T  8451331 caatttattcgggctcaaacaaaaaggaagcgggcaaatatgacagtgttggagggggaggcagtagctttactcgattccattcacttcgctgatgtga 8451232  T
Q  232 ac 233  Q
    ||    
T  8451231 ac 8451230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 198
Target Start/End: Original strand, 23853873 - 23853977
Alignment:
Q  100 ttacaacttttgcgtgttgtattagagactcgc-----caatttatacgggctcaaacaagatgacagcg-acaaatatgacagttttggagggggagac 193  Q
    ||||| |||||||||||| | |||||||||| |     |||||||| |||| |||||| | ||||||||| | ||||||||||||||||||||| ||| |    
T  23853873 ttacatcttttgcgtgttatgttagagactcccgtgggcaatttattcgggttcaaacgaaatgacagcggaaaaatatgacagttttggagggtgaggc 23853972  T
Q  194 agtag 198  Q
    |||||    
T  23853973 agtag 23853977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 40588938 - 40588872
Alignment:
Q  133 caatttatacgggctcaaacaagatgacagcga-caaatatgacagttttggagggggagacagtag 198  Q
    |||||||| ||||||||||| | ||| |||||  ||||||| |||||||||||||||||| ||||||    
T  40588938 caatttattcgggctcaaacgaaatggcagcgggcaaatataacagttttggagggggaggcagtag 40588872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 8e-23; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 100 - 229
Target Start/End: Original strand, 44527194 - 44527329
Alignment:
Q  100 ttacaacttttgcgtgttgtattagagactc-----gccaatttatacgggctcaaacaagatgacagcg-acaaatatgacagttttggagggggagac 193  Q
    ||||| |||||||||||||| ||||||||||     | |||||||| ||||||||||||| ||| ||||| ||||||||||||||||||||||||||| |    
T  44527194 ttacatcttttgcgtgttgtgttagagactcttgtgggcaatttattcgggctcaaacaaaatggcagcggacaaatatgacagttttggagggggaggc 44527293  T
Q  194 agtagttttactcaatgctcttcactttgctgatgc 229  Q
    |||||  |||||  | || |||||||||||||||||    
T  44527294 agtagccttactagaggcccttcactttgctgatgc 44527329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 100 - 233
Target Start/End: Original strand, 36733637 - 36733776
Alignment:
Q  100 ttacaacttttgcgtgttgtattagagactcgc-----caatttatacgggctcaaacaagatgacagcgac-aaatatgacagttttggagggggagac 193  Q
    ||||| |||||| ||||||| |||||||||| |     |||||||| ||||||||||||| |||||| ||   ||||||| ||||||||||||||||| |    
T  36733637 ttacaccttttgtgtgttgtgttagagactctcgtggacaatttattcgggctcaaacaaaatgacaacgggtaaatatggcagttttggagggggaggc 36733736  T
Q  194 agtagttttactcaatgctcttcactttgctgatgcgaac 233  Q
    |||||| |||||||||| | ||||||||||||||| ||||    
T  36733737 agtagtcttactcaatgttattcactttgctgatgtgaac 36733776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 4394904 - 4394956
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    |||||||||||||||||||||||||||||| ||||||||||||| || |||||    
T  4394904 catcatacatcaacgagcattgggaggacggcactagatgcatgacaacaatg 4394956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 5609084 - 5609136
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    ||||||||||||  ||||||||||||||||||||||||||||||| |||||||    
T  5609084 catcatacatcattgagcattgggaggacgacactagatgcatggtagcaatg 5609136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 44527010 - 44527062
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    ||||| || |||||||||||||||||||| ||||||||||||||||| |||||    
T  44527010 catcacacttcaacgagcattgggaggacaacactagatgcatggcaacaatg 44527062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 224
Target Start/End: Original strand, 48166178 - 48166308
Alignment:
Q  100 ttacaacttttgcgtgttgtattagagactcgc-----caatttatacgggctcaaacaagatgacagcga-caaatatgacagttttggagggggagac 193  Q
    ||||| |||||| ||||||| |||||||||| |     |||||||| ||||||||||  | ||| |||||| |||||||||||||||||||| |||||||    
T  48166178 ttacatcttttgtgtgttgtgttagagactcccgtggtcaatttattcgggctcaaatgaaatggcagcgagcaaatatgacagttttggagtgggagac 48166277  T
Q  194 agtagttttactcaatgctcttcactttgct 224  Q
    | |||  |||||| |||   |||||||||||    
T  48166278 aatagccttactcgatgtcattcactttgct 48166308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 233
Target Start/End: Original strand, 5609318 - 5609419
Alignment:
Q  133 caatttatacgggctcaaacaagatgacagcg-acaaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgctgatgcga 231  Q
    |||||||| |||||||||||   ||||||||| |||||||||| ||||||| |||||||| ||||||  |||||| | |  |||||||||| || |||||    
T  5609318 caatttattcgggctcaaactctatgacagcggacaaatatgatagttttgaagggggaggcagtagccttactcgaggtccttcactttgatgttgcga 5609417  T
Q  232 ac 233  Q
    ||    
T  5609418 ac 5609419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 165 - 233
Target Start/End: Original strand, 44602764 - 44602832
Alignment:
Q  165 acaaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgctgatgcgaac 233  Q
    |||||||||||| ||||||||||||||||| |||| |||||| |||   |||||||| |||||| ||||    
T  44602764 acaaatatgacaattttggagggggagacattagtcttactcgatgtcattcactttactgatgtgaac 44602832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 36733438 - 36733490
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    |||||||| ||||| | ||| || ||||| |||||||||||||||||||||||    
T  36733438 catcatacttcaacaaacatcggaaggacaacactagatgcatggcagcaatg 36733490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 51113060 - 51113112
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    ||||| || ||||| ||||| ||||||||  ||||||||||||||||||||||    
T  51113060 catcacacttcaacaagcatcgggaggacagcactagatgcatggcagcaatg 51113112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 100 - 229
Target Start/End: Original strand, 53496973 - 53497108
Alignment:
Q  100 ttacaacttttgcgtgttgtattagagactc-----gccaatttatacgggctcaaacaagatgacagcg-acaaatatgacagttttggagggggagac 193  Q
    ||||| |||||||||||||| ||||||||||     | |||||||| ||||||||||||| ||||||||| |||||| |||||||||| ||||||||| |    
T  53496973 ttacatcttttgcgtgttgtgttagagactcttgtgggcaatttattcgggctcaaacaaaatgacagcggacaaatgtgacagtttttgagggggaggc 53497072  T
Q  194 agtagttttactcaatgctcttcactttgctgatgc 229  Q
    |||||  |||||  | || |||||||||||||||||    
T  53497073 agtagccttactagaggcccttcactttgctgatgc 53497108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 53496789 - 53496841
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    ||||| || |||||||||||||||||||| |||||||||||||||||||||||    
T  53496789 catcacacttcaacgagcattgggaggacaacactagatgcatggcagcaatg 53496841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 11020356 - 11020287
Alignment:
Q  164 gacaaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgctgatgcgaac 233  Q
    ||||||||||||| |||||||||||||||||  || ||||||| ||||| || |||||||||||| ||||    
T  11020356 gacaaatatgacacttttggagggggagacatcagctttactcgatgctatttactttgctgatgggaac 11020287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 27941233 - 27941136
Alignment:
Q  107 ttttgcgtgttgtattagagactcgc-----caatttatacgggctcaaacaagatgacagcg-acaaatatgacagttttggagggggagacagtag 198  Q
    ||||||||||||||||||||| || |     |||||||| ||| ||||||||| ||| ||||| |||||||||| |||||||||||||||| ||||||    
T  27941233 ttttgcgtgttgtattagagattctcgaggacaatttattcggactcaaacaaaatggcagcggacaaatatgatagttttggagggggaggcagtag 27941136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 222
Target Start/End: Original strand, 55199452 - 55199580
Alignment:
Q  100 ttacaacttttgcgtgttgtattagagactcgc-----caatttatacgggctcaaacaagatgacagc-gacaaatatgacagttttggagggggagac 193  Q
    ||||| |||| ||||||||| |||||||||| |     ||||| || ||||||||||| | |||||||| || ||||||||||||||||||||||||| |    
T  55199452 ttacatctttcgcgtgttgtgttagagactcccgtgggcaattcattcgggctcaaacgaaatgacagctgataaatatgacagttttggagggggaggc 55199551  T
Q  194 agtagttttactcaatgctcttcactttg 222  Q
    ||| |  |||||| ||||  |||||||||    
T  55199552 agttgccttactcgatgccattcactttg 55199580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 2615506 - 2615568
Alignment:
Q  166 caaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgctgatg 228  Q
    ||||||||| |||||||||||||||| ||||||  |||||| |||   |||||||||||||||    
T  2615506 caaatatgatagttttggagggggaggcagtagccttactcgatgtcgttcactttgctgatg 2615568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 100 - 190
Target Start/End: Complemental strand, 41835557 - 41835461
Alignment:
Q  100 ttacaacttttgcgtgttgtattagagactcgc-----caatttatacgggctcaaacaagatgacagc-gacaaatatgacagttttggaggggga 190  Q
    |||||||||||||||||||| |||||||||| |     |||||||| ||||||||||||| |||||||| | |||||||||||||||||||||||||    
T  41835557 ttacaacttttgcgtgttgtgttagagactctcgcagacaatttattcgggctcaaacaaaatgacagctggcaaatatgacagttttggaggggga 41835461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 131 - 233
Target Start/End: Original strand, 49951290 - 49951393
Alignment:
Q  131 gccaatttatacgggctcaaacaagatgacagcga-caaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgctgatgc 229  Q
    |||||||||| ||||||||||| | ||| |||||  ||||||||||||| |||||||||||| ||||||  |||||| | || |||||||||||||||||    
T  49951290 gccaatttattcgggctcaaacgaaatggcagcgggcaaatatgacagtattggagggggaggcagtagccttactcgaggcccttcactttgctgatgc 49951389  T
Q  230 gaac 233  Q
    ||||    
T  49951390 gaac 49951393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 2064833 - 2064933
Alignment:
Q  134 aatttatacgggctcaaacaagatgacagcga-caaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgctgatgcgaa 232  Q
    ||||||| ||||||||||||| |||||||||  ||||||||||||| ||| |||||||| ||||||  |||||| | || |||||||||||||||| |||    
T  2064833 aatttattcgggctcaaacaaaatgacagcgggcaaatatgacagtattgaagggggaggcagtagccttactcgacgcccttcactttgctgatgagaa 2064932  T
Q  233 c 233  Q
    |    
T  2064933 c 2064933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 51735179 - 51735083
Alignment:
Q  133 caatttatacgggctcaaacaagatgacagcga-caaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgctgatg 228  Q
    |||||||| |||||| |||| | |||||||||  |||||||||||||||||||||||||| ||||||  |||||| ||||  |||||||||||||||    
T  51735179 caatttattcgggcttaaacgaaatgacagcgtgcaaatatgacagttttggagggggaggcagtagccttactcgatgccattcactttgctgatg 51735083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 100 - 229
Target Start/End: Original strand, 21321468 - 21321603
Alignment:
Q  100 ttacaacttttgcgtgttgtattagagactcgcc-----aatttatacgggctcaaacaagatgacagcga-caaatatgacagttttggagggggagac 193  Q
    ||||||||||||| ||||||||||||||||| |      ||||||| ||||||||||| | ||| || ||  ||||||||||||||||||||||||||||    
T  21321468 ttacaacttttgcatgttgtattagagactctcgcgggaaatttattcgggctcaaacgaaatggcaacgggcaaatatgacagttttggagggggagac 21321567  T
Q  194 agtagttttactcaatgctcttcactttgctgatgc 229  Q
    | |||  |||||| | || ||||||||| |||||||    
T  21321568 aatagccttactcgaggcccttcacttttctgatgc 21321603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 21321272 - 21321324
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    |||||||||||||||||||||||||||||  |||||||||| |||||||||||    
T  21321272 catcatacatcaacgagcattgggaggacagcactagatgcttggcagcaatg 21321324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 233
Target Start/End: Complemental strand, 18442391 - 18442252
Alignment:
Q  100 ttacaacttttgcgtgttgtattagagactcgc-----caatttatacgggctcaaacaagatgacagcgacaaa-tatgacagttttggagggggagac 193  Q
    |||||||||||||||||||| |||||||||| |     |||||||| ||||||||||| | |||  ||||  ||| ||||||||| |||||||||||| |    
T  18442391 ttacaacttttgcgtgttgtgttagagactcccatgggcaatttattcgggctcaaacgaaatggaagcgggaaaatatgacagtattggagggggaggc 18442292  T
Q  194 agtagttttactcaatgctcttcactttgctgatgcgaac 233  Q
    |||||  |||||| | || || |||||||||| |||||||    
T  18442291 agtagccttactcgaggccctacactttgctgttgcgaac 18442252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 37246026 - 37245959
Alignment:
Q  166 caaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgctgatgcgaac 233  Q
    |||||||||||||||||||||||||| ||||||  |||||| ||||| ||||||||||| ||| ||||    
T  37246026 caaatatgacagttttggagggggaggcagtagccttactcgatgctattcactttgcttatgtgaac 37245959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 233
Target Start/End: Original strand, 55734950 - 55735089
Alignment:
Q  100 ttacaacttttgcgtgttgtattagagactcgc-----caatttatacgggctcaaacaagatgacagcga-caaatatgacagttttggagggggagac 193  Q
    ||||| |||||||||||||| |||||||||| |     |||||| | ||||||||||| | |||  ||||| ||||||||||||| |||||||||||| |    
T  55734950 ttacatcttttgcgtgttgtgttagagactcccatgagcaatttgttcgggctcaaacgaaatggaagcgagcaaatatgacagtattggagggggaggc 55735049  T
Q  194 agtagttttactcaatgctcttcactttgctgatgcgaac 233  Q
    |||||  |||||| | || |||||||||| || |||||||    
T  55735050 agtagccttactcgaggcccttcactttgttgttgcgaac 55735089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 225
Target Start/End: Original strand, 56065570 - 56065701
Alignment:
Q  100 ttacaacttttgcgtgttgtattagagactcgc-----caatttatacgggctcaaacaagatgacagcga-caaatatgacagttttggagggggagac 193  Q
    ||||| |||| ||||||||| |||||||||| |     ||||| || ||||||||||| | |||||| ||| |||||||||||||||||||||||||| |    
T  56065570 ttacatctttcgcgtgttgttttagagactcccgtgggcaattcattcgggctcaaacgaaatgacaacgagcaaatatgacagttttggagggggaggc 56065669  T
Q  194 agtagttttactcaatgctcttcactttgctg 225  Q
    ||| |  |||||| ||||  ||||||||||||    
T  56065670 agttgccttactcgatgccattcactttgctg 56065701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 133 - 233
Target Start/End: Complemental strand, 29655874 - 29655773
Alignment:
Q  133 caatttatacgggctcaaacaagatgacagcga-caaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgctgatgcga 231  Q
    |||||||| ||||||||||||| ||| |||||  |||||||||| ||||||||||| ||| ||||||  |||||| |||   ||||||||||||||| ||    
T  29655874 caatttattcgggctcaaacaaaatggcagcgggcaaatatgactgttttggagggagaggcagtagccttactcgatgtcattcactttgctgatgtga 29655775  T
Q  232 ac 233  Q
    ||    
T  29655774 ac 29655773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 51259972 - 51259920
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    ||||| || ||||| |||||||||||||| |||||||||||||||||||||||    
T  51259972 catcacacttcaacaagcattgggaggacaacactagatgcatggcagcaatg 51259920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 56065374 - 56065426
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    ||||| || ||||| |||||||||||||| |||||||||||||||||||||||    
T  56065374 catcacacttcaacaagcattgggaggacaacactagatgcatggcagcaatg 56065426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 28426196 - 28426258
Alignment:
Q  166 caaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgctgatg 228  Q
    |||||||||| ||||||||||||||| ||||||  ||||||  |||| |||||||||||||||    
T  28426196 caaatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatg 28426258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 49119574 - 49119512
Alignment:
Q  166 caaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgctgatg 228  Q
    |||||||||| ||||||||||||||| ||||||  ||||||  |||| |||||||||||||||    
T  49119574 caaatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatg 49119512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 29656107 - 29656055
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    |||||||| ||||  |||||||| ||||| |||||||||||||||||||||||    
T  29656107 catcatacttcaaaaagcattggaaggacaacactagatgcatggcagcaatg 29656055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 194
Target Start/End: Complemental strand, 43840553 - 43840453
Alignment:
Q  100 ttacaacttttgcgtgttgtattagagactcgc-----caatttatacgggctcaaacaagatgacagcg-acaaatatgacagttttggagggggagac 193  Q
    ||||| ||||||||| |||| |||||||||| |     |||||||| |||| |||||| | ||| ||||| |||||||||||||| ||||||||||||||    
T  43840553 ttacatcttttgcgttttgtgttagagactcccgtggacaatttattcggggtcaaacgaaatggcagcggacaaatatgacagtgttggagggggagac 43840454  T
Q  194 a 194  Q
    |    
T  43840453 a 43840453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 55734754 - 55734806
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    |||||||| |||| ||||||||||||||| |||||||||| |||||| |||||    
T  55734754 catcatacttcaatgagcattgggaggacaacactagatgtatggcaacaatg 55734806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 18442586 - 18442534
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    |||||||| | || ||||||||||||||| |||||| |||||||||| |||||    
T  18442586 catcatactttaatgagcattgggaggacaacactatatgcatggcaacaatg 18442534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 456 - 500
Target Start/End: Complemental strand, 19386543 - 19386499
Alignment:
Q  456 cactgatcacaactgggcggaaaacgcagacggacttgctcatcg 500  Q
    |||||||| ||||||  ||||||||||||||| ||||||||||||    
T  19386543 cactgatctcaactgcccggaaaacgcagacgaacttgctcatcg 19386499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 28538227 - 28538175
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    |||||||| ||||||||||| || ||||| |||||||||||||| || |||||    
T  28538227 catcatacttcaacgagcatgggaaggacaacactagatgcatgtcaacaatg 28538175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 47226493 - 47226437
Alignment:
Q  177 gttttggagggggagacagtagttttactcaatgctcttcactttgctgatgcgaac 233  Q
    |||||||||||||||  | |||| |||||| | ||| ||||||||||||||||||||    
T  47226493 gttttggagggggaggtaatagtcttactcgaggcttttcactttgctgatgcgaac 47226437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 49951058 - 49951110
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    |||||||| |||||||||||||  ||||| |||||||| |||||||| |||||    
T  49951058 catcatacttcaacgagcattgaaaggacaacactagaagcatggcaacaatg 49951110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 100 - 229
Target Start/End: Original strand, 4268040 - 4268175
Alignment:
Q  100 ttacaacttttgcgtgttgtattagagactcgc-----caatttatacgggctcaaacaagatgacagcga-caaatatgacagttttggagggggagac 193  Q
    ||||| |||||||||||||| |||||||||| |     |||||||| | ||||||||||| ||| |||||  |||||||||||||||||||||||||| |    
T  4268040 ttacatcttttgcgtgttgtgttagagactctcgtgggcaatttattcaggctcaaacaaaatggcagcgggcaaatatgacagttttggagggggaggc 4268139  T
Q  194 agtagttttactcaatgctcttcactttgctgatgc 229  Q
    |||||  |||||  | || |||||||||||||||||    
T  4268140 agtagccttactagaggcccttcactttgctgatgc 4268175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 100 - 233
Target Start/End: Complemental strand, 15988995 - 15988856
Alignment:
Q  100 ttacaacttttgcgtgttgtattagagact--cgc---caatttatacgggctcaaacaagatgacagcg-acaaatatgacagttttggagggggagac 193  Q
    |||||||||||||||||| | | |||||||  |||   |||||||| ||||||||||| | ||| ||||| ||||||||||||||||||||||||||| |    
T  15988995 ttacaacttttgcgtgttatgtcagagactttcgcgagcaatttattcgggctcaaacgaaatggcagcggacaaatatgacagttttggagggggaggc 15988896  T
Q  194 agtagttttactcaatgctcttcactttgctgatgcgaac 233  Q
    ||||   |||||| | || ||| |||||||||||||||||    
T  15988895 agtaaccttactcgaggccctttactttgctgatgcgaac 15988856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 25730788 - 25730888
Alignment:
Q  134 aatttatacgggctcaaacaagatgacagcga-caaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgctgatgcgaa 232  Q
    ||||||| || |||||||| | ||| |||||  |||||||||||||||||||||||||| ||||||  |||||| | || ||||||||||||||||||||    
T  25730788 aatttattcgagctcaaacgaaatggcagcgggcaaatatgacagttttggagggggaggcagtagccttactcgaggcccttcactttgctgatgcgaa 25730887  T
Q  233 c 233  Q
    |    
T  25730888 c 25730888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 15989191 - 15989139
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    |||||||||||||||||||||||||||||| || ||||||||||||| |||||    
T  15989191 catcatacatcaacgagcattgggaggacggcattagatgcatggcaacaatg 15989139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 229
Target Start/End: Complemental strand, 11375759 - 11375624
Alignment:
Q  100 ttacaacttttgcgtgttgtattagagactcgc-ca----atttatacgggctcaaacaagatgacagcgac-aaatatgacagttttggagggggagac 193  Q
    ||||||||||||| |||||| |||||||||| | ||    |||||| ||| ||||||| | ||| ||||||  |||||||||||||||||||||||||||    
T  11375759 ttacaacttttgcatgttgtgttagagactctcgcaggtgatttattcggactcaaacgaaatggcagcgagtaaatatgacagttttggagggggagac 11375660  T
Q  194 agtagttttactcaatgctcttcactttgctgatgc 229  Q
    |||||  |||||| | || ||||| ||||| |||||    
T  11375659 agtagccttactcgaggcccttcattttgcggatgc 11375624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 228
Target Start/End: Complemental strand, 22767503 - 22767369
Alignment:
Q  100 ttacaacttttgcgtgttgtattagagactcgc-----caatttatacgggctcaaacaagatgacagcga-caaatatgacagttttggagggggagac 193  Q
    ||||| |||||||||||||| ||||||| || |     |||||||| ||||||||||| | ||| || ||  |||||||||| ||||||||||||||| |    
T  22767503 ttacatcttttgcgtgttgtgttagagattcccgggggcaatttattcgggctcaaacgaaatggcaacgggcaaatatgactgttttggagggggaggc 22767404  T
Q  194 agtagttttactcaatgctcttcactttgctgatg 228  Q
    |||||  ||||||  |||| |||||||||||||||    
T  22767403 agtagccttactcgctgctattcactttgctgatg 22767369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 20204700 - 20204752
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    |||||||| ||||||||||||||||||||  |||||||||||||||| |||||    
T  20204700 catcatacttcaacgagcattgggaggacagcactagatgcatggcaacaatg 20204752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 25730586 - 25730638
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    ||||||||||||||||||||||||| |||| || || ||||||||||||||||    
T  25730586 catcatacatcaacgagcattgggaagacggcattatatgcatggcagcaatg 25730638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 41940909 - 41940843
Alignment:
Q  167 aaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgctgatgcgaac 233  Q
    |||||||||||||||||||||||||||| |||  ||||||||||   ||||||||||| ||| ||||    
T  41940909 aaatatgacagttttggagggggagacaatagccttactcaatgtcattcactttgctcatgtgaac 41940843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 4267856 - 4267908
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    ||||| || ||||||| ||||||||||||  ||||||||||||||||||||||    
T  4267856 catcacacttcaacgaacattgggaggacagcactagatgcatggcagcaatg 4267908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 27292413 - 27292509
Alignment:
Q  133 caatttatacgggctcaaacaagatgacagcg-acaaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgctgatg 228  Q
    |||||||| ||||||||||||| ||| ||||| |||||||| |  |||||| |||||||| || |||  |||||  |||| ||||||||||||||||    
T  27292413 caatttattcgggctcaaacaaaatggcagcggacaaatattattgttttgaagggggaggcaatagccttactagatgcccttcactttgctgatg 27292509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 8387840 - 8387883
Alignment:
Q  17 tcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    ||||| |||||||||||||  |||||||||||||||||||||||    
T  8387840 tcaacaagcattgggaggaaaacactagatgcatggcagcaatg 8387883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 233
Target Start/End: Original strand, 12660257 - 12660396
Alignment:
Q  100 ttacaacttttgcgtgttgtattagagactcgc-----caatttatacgggctcaaacaagatgacagcga-caaatatgacagttttggagggggagac 193  Q
    ||||| |||||||||||||| |||||||||  |     |||||||| ||||||||||| | ||| |||||  ||||||||||||| || ||| ||||| |    
T  12660257 ttacatcttttgcgtgttgtgttagagactttcatggacaatttattcgggctcaaacgaaatggcagcgggcaaatatgacagtgttagagcgggaggc 12660356  T
Q  194 agtagttttactcaatgctcttcactttgctgatgcgaac 233  Q
    |||||| |||||| |||   ||||||||||| ||| ||||    
T  12660357 agtagtcttactcgatgtcattcactttgctaatgtgaac 12660396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 8388098 - 8388156
Alignment:
Q  165 acaaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgc 223  Q
    ||||||||||||||||||||||||||| |||| |  |||||| ||||  ||||||||||    
T  8388098 acaaatatgacagttttggagggggaggcagttgccttactcgatgccattcactttgc 8388156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 27533349 - 27533297
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    |||||||| ||||| |||||||| | ||| ||||||||||||||||| |||||    
T  27533349 catcatacttcaacaagcattggaaagacaacactagatgcatggcaacaatg 27533297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 229
Target Start/End: Complemental strand, 12130842 - 12130749
Alignment:
Q  137 ttatacgggctcaaacaagatgacagcga-caaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgctgatgc 229  Q
    |||| ||||||||||| | |||||||||| ||||||||| ||| |||||||||||| ||||||  |||||  | ||||||||||||||||||||    
T  12130842 ttattcgggctcaaacgaaatgacagcgagcaaatatgatagtgttggagggggaggcagtagccttacttgaggctcttcactttgctgatgc 12130749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 88304 - 88356
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    ||||||| |||||||||||||||||||||||||||||||||||| || |||||    
T  88304 catcatagatcaacgagcattgggaggacgacactagatgcatgacaacaatg 88356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 228
Target Start/End: Complemental strand, 34696148 - 34696016
Alignment:
Q  100 ttacaacttttgcgtgttgtattagagactcgc-----caatttatacgggctcaaacaagatgacagcga-caaatatgacagttttggagggggagac 193  Q
    ||||| |||||||||||||  |||||||||| |     |||||||| ||||||||| |  |||| |||||  |||||||||||||||||||||||||| |    
T  34696148 ttacatcttttgcgtgttgcgttagagactcccgtgggcaatttattcgggctcaatc--gatggcagcgggcaaatatgacagttttggagggggaggc 34696051  T
Q  194 agtagttttactcaatgctcttcactttgctgatg 228  Q
    |||||  |||||||| ||  |||||||||||||||    
T  34696050 agtagccttactcaaggccattcactttgctgatg 34696016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 228
Target Start/End: Complemental strand, 34718560 - 34718428
Alignment:
Q  100 ttacaacttttgcgtgttgtattagagactcgc-----caatttatacgggctcaaacaagatgacagcga-caaatatgacagttttggagggggagac 193  Q
    ||||| |||||||||||||  |||||||||| |     |||||||| ||||||||| |  |||| |||||  |||||||||||||||||||||||||| |    
T  34718560 ttacatcttttgcgtgttgcgttagagactcccgtgggcaatttattcgggctcaatc--gatggcagcgggcaaatatgacagttttggagggggaggc 34718463  T
Q  194 agtagttttactcaatgctcttcactttgctgatg 228  Q
    |||||  |||||||| ||  |||||||||||||||    
T  34718462 agtagccttactcaaggccattcactttgctgatg 34718428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 194
Target Start/End: Complemental strand, 44017564 - 44017464
Alignment:
Q  100 ttacaacttttgcgtgttgtattagagactcgc-----caatttatacgggctcaaacaagatgacagcga-caaatatgacagttttggagggggagac 193  Q
    ||||| |||| ||||||||| |||||||||| |     |||||||| |||||||||| || |||||| ||  ||||||||||||||||||||||||||||    
T  44017564 ttacatctttcgcgtgttgtgttagagactcccgtgggcaatttattcgggctcaaataaaatgacaccgtgcaaatatgacagttttggagggggagac 44017465  T
Q  194 a 194  Q
    |    
T  44017464 a 44017464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 88572 - 88635
Alignment:
Q  166 caaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgctgatgc 229  Q
    |||||||||||||||||||||||||| ||||||  |||||| | || |||||||||| ||||||    
T  88572 caaatatgacagttttggagggggaggcagtagccttactcgaggcccttcactttgttgatgc 88635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 18345662 - 18345598
Alignment:
Q  164 gacaaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgctgatgc 229  Q
    ||||||||||||||||||| |||||||| ||||||  |||||| | || |||||||||||||||||    
T  18345662 gacaaatatgacagttttg-agggggaggcagtagccttactcgaggcccttcactttgctgatgc 18345598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 34696344 - 34696292
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    |||||||| ||||| |||||||| ||||| ||||||||||||||||| |||||    
T  34696344 catcatacttcaacaagcattggaaggacaacactagatgcatggcaacaatg 34696292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 34718756 - 34718704
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    |||||||| ||||| |||||||| ||||| ||||||||||||||||| |||||    
T  34718756 catcatacttcaacaagcattggaaggacaacactagatgcatggcaacaatg 34718704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 9709941 - 9709999
Alignment:
Q  165 acaaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgc 223  Q
    ||||||||||||||||||||||||||| |||| |  |||||| ||||  ||||||||||    
T  9709941 acaaatatgacagttttggagggggaggcagttgccttactcgatgccattcactttgc 9709999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 18345916 - 18345864
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    ||||| || ||||||||||||| |||||| |||||| ||||||||||| ||||    
T  18345916 catcacacttcaacgagcattgcgaggacaacactaaatgcatggcagtaatg 18345864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 29201197 - 29201104
Alignment:
Q  106 cttttgcgtgttgtattagagactc-------gccaatttatacgggctcaaacaagatgacagcg-acaaatatgacagttttggagggggag 191  Q
    ||||||| |||||||||||||||||       |||| ||||| ||||||||||| | ||||||||| |||||||||||||||||||||||||||    
T  29201197 cttttgcatgttgtattagagactcatgtgtggccagtttattcgggctcaaacgaaatgacagcggacaaatatgacagttttggagggggag 29201104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 17877162 - 17877214
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    |||||||| ||||||||||||||||||||  |||||||||||||||| |||||    
T  17877162 catcatacttcaacgagcattgggaggacagcactagatgcatggcaacaatg 17877214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 22288986 - 22289038
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    ||||| || ||||| |||||||||||||| |||||||||||||||||||||||    
T  22288986 catcacacttcaacaagcattgggaggacaacactagatgcatggcagcaatg 22289038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 9328775 - 9328714
Alignment:
Q  167 aaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgctgatg 228  Q
    ||||||||| ||||||||||||||| ||||||  ||||||  |||| |||||||||||||||    
T  9328775 aaatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatg 9328714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 233
Target Start/End: Original strand, 16731912 - 16732013
Alignment:
Q  133 caatttatacgggctcaaacaagatgacagcga-caaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgctgatgcga 231  Q
    |||||||| ||||||||||| | ||| ||| |  ||||||||||||| |||||||||||| ||||||  |||||| | ||  |||||| |||||||||||    
T  16731912 caatttattcgggctcaaacgaaatggcagagggcaaatatgacagtattggagggggaggcagtagccttactcgaggccattcactctgctgatgcga 16732011  T
Q  232 ac 233  Q
    ||    
T  16732012 ac 16732013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 233
Target Start/End: Original strand, 17710046 - 17710147
Alignment:
Q  133 caatttatacgggctcaaacaagatgacagcga-caaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgctgatgcga 231  Q
    |||||||| ||||||||||| | ||| ||| |  ||||||||||||| |||||||||||| ||||||  |||||| | ||  |||||| |||||||||||    
T  17710046 caatttattcgggctcaaacgaaatggcagagggcaaatatgacagtattggagggggaggcagtagccttactcgaggccattcactctgctgatgcga 17710145  T
Q  232 ac 233  Q
    ||    
T  17710146 ac 17710147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 1581360 - 1581412
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    |||||||| ||||||||||||| ||| |||||||||||||| ||||| |||||    
T  1581360 catcatacttcaacgagcattgcgagaacgacactagatgcttggcaacaatg 1581412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 16731678 - 16731730
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    |||| ||| |||||||||||||||||||| |||||||| |||||||| |||||    
T  16731678 catcgtacttcaacgagcattgggaggacaacactagaagcatggcaacaatg 16731730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 17709812 - 17709864
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    |||| ||| |||||||||||||||||||| |||||||| |||||||| |||||    
T  17709812 catcgtacttcaacgagcattgggaggacaacactagaagcatggcaacaatg 17709864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 15053421 - 15053304
Alignment:
Q  100 ttacaacttttgcgtgttgtattagagactc-----gccaatttatacgggctcaaacaagatgacagc-gacaaatatgacagttttggagggggagac 193  Q
    ||||| |||||||||||||| |||||||||      | |||||||| |||||||||||||||||||||| |  |||||||| ||| |||||||||||| |    
T  15053421 ttacatcttttgcgtgttgtgttagagacttcagtggacaatttattcgggctcaaacaagatgacagcgggtaaatatgatagtgttggagggggaggc 15053322  T
Q  194 agtagttttactcaatgc 211  Q
    |||||  |||||| ||||    
T  15053321 agtagccttactcgatgc 15053304  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 19364387 - 19364335
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    |||||||| |||||||||||||||||||| |||||||||||||| || |||||    
T  19364387 catcatacttcaacgagcattgggaggacaacactagatgcatgacaacaatg 19364335  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 100 - 233
Target Start/End: Complemental strand, 15606240 - 15606101
Alignment:
Q  100 ttacaacttttgcgtgttgtattagagactcgc-----caatttatacgggctcaaacaagatgacagcgacaaat-atgacagttttggagggggagac 193  Q
    ||||| ||||| |||||||| |||||||||| |     ||| |||| ||||||||||||| ||| |||||  |||  ||||||||||||||||||||| |    
T  15606240 ttacatctttttcgtgttgtgttagagactcccatgggcaacttattcgggctcaaacaaaatggcagcgggaaaacatgacagttttggagggggaggc 15606141  T
Q  194 agtagttttactcaatgctcttcactttgctgatgcgaac 233  Q
    |||||  |||||| ||||  ||||||||| ||||| ||||    
T  15606140 agtagccttactcgatgccattcactttgttgatgggaac 15606101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 29368478 - 29368426
Alignment:
Q  8 catcatacatcaacgagcattgggaggacgacactagatgcatggcagcaatg 60  Q
    |||||||| | || ||||||||||||||| |||||||||||||| ||||||||    
T  29368478 catcatacctgaatgagcattgggaggacaacactagatgcatgacagcaatg 29368426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 11731873 - 11731818
Alignment:
Q  134 aatttatacgggctcaaacaagatgacagcga-caaatatgacagttttggagggg 188  Q
    ||||||| ||||||||||||| ||| |||||  |||||||||||||||||||||||    
T  11731873 aatttatccgggctcaaacaaaatggcagcgggcaaatatgacagttttggagggg 11731818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 223
Target Start/End: Original strand, 28107118 - 28107209
Alignment:
Q  133 caatttatacgggctcaaacaagatgacagcg-acaaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgc 223  Q
    |||||||| | ||||||||| | ||| ||||| ||| ||||||||||||||||||||||| ||||||  |||||  ||||  ||||||||||    
T  28107118 caatttattcaggctcaaacgaaatggcagcggacagatatgacagttttggagggggaggcagtagccttacttgatgccattcactttgc 28107209  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 14680176 - 14680238
Alignment:
Q  167 aaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgctgatgc 229  Q
    |||||||||||| |||||||||||| ||||||  |||||| | || ||||||| |||||||||    
T  14680176 aaatatgacagtattggagggggaggcagtagccttactcgaggcccttcactctgctgatgc 14680238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 29368229 - 29368167
Alignment:
Q  167 aaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgctgatgc 229  Q
    ||||||||||||||||||||||||| || ||   |||||| | || |||||||||||||||||    
T  29368229 aaatatgacagttttggagggggaggcaatatccttactcgaggcccttcactttgctgatgc 29368167  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 30802199 - 30802133
Alignment:
Q  133 caatttatacgggctcaaacaagatgacagcga-caaatatgacagttttggagggggagacagtag 198  Q
    |||||||| |||||| |||||| ||| |||||  |||||||||||||||||| ||||||| ||||||    
T  30802199 caatttattcgggcttaaacaaaatggcagcgggcaaatatgacagttttggtgggggaggcagtag 30802133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 11732089 - 11732041
Alignment:
Q  11 catacatcaacgagcattgggaggacgacactagatgcatggcagcaat 59  Q
    ||||| |||| ||||||||||||||| ||| ||||||||||| ||||||    
T  11732089 catacttcaatgagcattgggaggacaacaatagatgcatgggagcaat 11732041  T

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Target: scaffold0446 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 225
Target Start/End: Original strand, 165 - 258
Alignment:
Q  133 caatttatacgggctcaaacaagatgacagcga-caaatatgacagttttggagggggagacagtagttttactcaatgctcttcactttgctg 225  Q
    ||||| || ||||||||||| | |||||| ||| ||||||||||||||| |||||||||| |||| |  |||||| ||||  ||||||||||||    
T  165 caattcattcgggctcaaacgaaatgacaacgagcaaatatgacagtttgggagggggaggcagttgccttactcgatgccattcactttgctg 258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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