View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2888-Insertion-7 (Length: 796)
Name: NF2888-Insertion-7
Description: NF2888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2888-Insertion-7 |
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Alignment Details
Target: chr4 (Bit Score: 625; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 8 - 685
Target Start/End: Complemental strand, 53901225 - 53900548
Alignment:
| Q |
8 |
cacctagcctatgtttgtttttgccgtggattgggttatcgcggcgcgcgctcattgaaatcttcaatttgacgcgagaaaagtgtatcaacgatactaa |
107 |
Q |
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| T |
53901225 |
cacctagcctatgtttgtttttgctgtggattgggttatcgcggcgtgcgctcattgaaatcttcaatttgatgcgagaaaaatgtatcaacgatactaa |
53901126 |
T |
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| Q |
108 |
acatacatttcaatttcagttttcatttgataccgacgttttaaataatttttgcgttgcgacttttgtcattgcggagattccccataaaacataagta |
207 |
Q |
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| T |
53901125 |
acatacatttcaatttcagttttcatttgataccgatgttttaaataatttttgcgttgcgacttttgtcattgcggagattcaccataaaacataagta |
53901026 |
T |
|
| Q |
208 |
actgtaaataaattgactgaatgcaaatttggttggttggttgttagttttggcaatctctagattttagagcttcaacaaaataatagttcaaccatga |
307 |
Q |
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| T |
53901025 |
actgtaaataaattgactgaatgcaaatttggttggttggttgttagttttggcaatctctagattttagagcttcaacaaaataatagttcaaccatga |
53900926 |
T |
|
| Q |
308 |
tttatccatccaaatttacaatgccatgttatttttccaaattttcagtcaatccaaatatgtaccaaatggtatggtatgtggctttggtctacctatg |
407 |
Q |
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| T |
53900925 |
tttatccatccaaatttacaatgccatgttatttttccaaattttcagtcaatccaaatatgtaccaaatggtatggtatgtggctttggtctacctatg |
53900826 |
T |
|
| Q |
408 |
agagttgactaaaaatttactcactcaacaagagtacattttatgttttttcaaacactactagtatactggatttgtaagttatgaaacactgcgtcac |
507 |
Q |
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| T |
53900825 |
agagttgactaaaaatttactcactcaacaagagtacattttatgttttttcacacactactagtatactggatttgtaagttatgaaacactgcgtcac |
53900726 |
T |
|
| Q |
508 |
cctacagcagaagaaactcttgactcaacagatgaaagtgacgcagaggaaaagtagnnnnnnngagaaaccatgagtgtgaattatgtctttatggaaa |
607 |
Q |
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| T |
53900725 |
cctacagcagaggaaactcttgactcaacagatgaaagtgacgcagaggaaaagtagtttttttgagaaaccatgagtgtgaattatgtctttatggaaa |
53900626 |
T |
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| Q |
608 |
aggtgacaacgtagcagaatttggtcccagtattaaatgctacatacagggaccttattaaaacacacattataatgg |
685 |
Q |
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| T |
53900625 |
aggtgacaacgtagcagaatttggtcccagtattaaatgctacatacagggaccttattaaaacacacattataatgg |
53900548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 751 - 796
Target Start/End: Complemental strand, 53900476 - 53900431
Alignment:
| Q |
751 |
ggcttttaaccagtgttgatgtggaaagattagctgaaattgctaa |
796 |
Q |
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| T |
53900476 |
ggcttttaaccagtgttgatgtggaaagattagctgaaattgctaa |
53900431 |
T |
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