View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2888-Insertion-8 (Length: 791)
Name: NF2888-Insertion-8
Description: NF2888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2888-Insertion-8 |
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Alignment Details
Target: chr2 (Bit Score: 669; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 669; E-Value: 0
Query Start/End: Original strand, 73 - 781
Target Start/End: Complemental strand, 38187504 - 38186796
Alignment:
| Q |
73 |
gtggaaagtggcacttgcaaattcaaatgtctcctattatggttgtatacacaccatatatttttaactcagttaccagttccttgcaccttttgcgttg |
172 |
Q |
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| T |
38187504 |
gtggaaagtggcacttacaaattcaaatgtctcctattatggttgtatacacaccatatatttttaactcagttaccagttccttgcaccttttgcgttg |
38187405 |
T |
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| Q |
173 |
gatgtttattccctaggattttttggcctaggatttgaatcaaactggaagattataatagaaattgtaggtgttcataaatagacataacttgtttcat |
272 |
Q |
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| T |
38187404 |
gatgtttattccctaggattttttggcctaggatttgaatcaaactggaagattatgatagaaattgtaggtgttcataaatagacataacttgtttcat |
38187305 |
T |
|
| Q |
273 |
agaatattgtttgtatttaataatattgacaattatggttctgatcttaaatgttacagcagaaatgctgtggacagtgagtatcaggaggctatctgca |
372 |
Q |
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| T |
38187304 |
agaatattgtttgtatttaataatattgacaattatggttctgatcttaaatgttacagcagaaatgctgtggacagtgagtatcaggaggctatctgca |
38187205 |
T |
|
| Q |
373 |
aagatgaaattggattccatgcagttatggggaaaggacattgttgactgtccaatctgatggtccagaaaaatgcagatttaaattttatttttagaat |
472 |
Q |
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| T |
38187204 |
aagatgaaattggattccatgcagttatggggaaaggacattgttgactgtccaatctgatggtccagaaaaatgcagatttaaattttatttttagaat |
38187105 |
T |
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| Q |
473 |
ttaaaatatcaagtttgaatctagaccgtcatatcttgattgaatgctcatcgatatctcaaatgtatgtaatatcaactgcacgagagtttgatcctaa |
572 |
Q |
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| T |
38187104 |
ttaaaatatcaagtttgaatgtagaccgtcatatcttgattgaatgctcatcgatatctcgaatgtgtgtaatatcaactgcacgagagtttgatcctaa |
38187005 |
T |
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| Q |
573 |
tattgacatatcaaatgactttgcaaccttgtacattgttgatgaatctagtaccaataagtattgaaagatggttccgaacagaatttgaactcagatt |
672 |
Q |
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| T |
38187004 |
tattgacatatcaaatgactttgcaaccttgtacattgttgatgaatctagtaccaataagtattgaaagatggttccaaacagaatttgaactcatatt |
38186905 |
T |
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| Q |
673 |
ctattgagtggtctttcttaactaaaactcatcaatgatttgagcttcataacaaaagataataaagagaacttaccaaagttgacttatttcatatttt |
772 |
Q |
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| T |
38186904 |
ctattgagtggtctttcttaactaaaactcatcaacgatttgagcttcataacaaaagattataaagagaacttacaaaagttgacttatttcatatttt |
38186805 |
T |
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| Q |
773 |
ttacaattc |
781 |
Q |
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| T |
38186804 |
ttacaattc |
38186796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 441 - 518
Target Start/End: Original strand, 42519949 - 42520025
Alignment:
| Q |
441 |
aaaaatgcagatttaaattttatttttagaatttaaaatatcaagtttgaatctagaccgtcatatcttgattgaatg |
518 |
Q |
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|||||||||||||| |||||| |||| | |||||||||||| |||||||||||||| ||| ||||||||||||| |
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| T |
42519949 |
aaaaatgcagatttcaattttgtttt-ataatttaaaatattgagtttgaatctagattgtctggtcttgattgaatg |
42520025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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