View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2888-Insertion-9 (Length: 751)
Name: NF2888-Insertion-9
Description: NF2888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2888-Insertion-9 |
 | |
|
| [»] chr3 (27 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 673; Significance: 0; HSPs: 27)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 48 - 751
Target Start/End: Complemental strand, 20016902 - 20016201
Alignment:
| Q |
48 |
tcaatgatgaatgagaagccatttaatgctatgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactg |
147 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20016902 |
tcaatgatgaatgagaagccattgaatgctatcatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactg |
20016803 |
T |
|
| Q |
148 |
cccattttttaaaacccatttcaaattacattcatgaatcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgccttt |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20016802 |
cccattttttaaaacccatttcaaattacattcatgaatcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgccttt |
20016703 |
T |
|
| Q |
248 |
gaagtttcatttcactgggtggcgccacccacaagacaaatgggtttgttgggttgatcagcttaaaccaaagcatgaatctgtgtggaagcaggttgga |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
20016702 |
gaagtttcatttcactgggtggcgccacccacaagacaaatgggtttgttgggttgatcagcttaaaacaaagtatgaatctgtgtggaagcaggttgga |
20016603 |
T |
|
| Q |
348 |
atctttgatgctattatgagcaccaagtgtcgcatactgagaaatcaaaacttgctatatgaggttgcggagaaatggtgttctaagacaaatacatttg |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20016602 |
atctttgatgctattatgagcaccaagtgtcgcatactgagaaatcaaaacttgctatatgaggttgcggagaaatggtgttctaagacaaatacatttg |
20016503 |
T |
|
| Q |
448 |
tgtttccatttgctgaagctacaatcactttggaggatattatggttttgggtggttaccctgtcatcggcgatcctgttttcatctcacttgaagacac |
547 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
20016502 |
tgtttccatttgctgaagctacaatcactttggaggatattatggttttgggtggttaccctgtcattggcgatcctgttttcatctcacttgaagacac |
20016403 |
T |
|
| Q |
548 |
aaaaatgagagaggtagaaaacaaattgatccttgcaagacagcaacttactaatcggaaacaacgtcacgcgtacacatcaatgtggatggatatgttc |
647 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20016402 |
aaaaatg--agaggtagaaaacaaattgatccttgcaagacagcaacttactaatcggaaacaacgtcacgcgtacacatcaatgtggatggatatgttc |
20016305 |
T |
|
| Q |
648 |
gctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccgtgaaaagttgtttgt |
747 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20016304 |
gctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccgtgaaaagttgtttgt |
20016205 |
T |
|
| Q |
748 |
ttcc |
751 |
Q |
| |
|
|||| |
|
|
| T |
20016204 |
ttcc |
20016201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 78 - 724
Target Start/End: Original strand, 19811728 - 19812371
Alignment:
| Q |
78 |
atgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattaca |
177 |
Q |
| |
|
|||||||| || ||||||||||||||||| |||||| |||||| ||| ||| ||||| |||||||||| |||||| | |||||||||||||| | || |
|
|
| T |
19811728 |
atgatggaagtcagggaagatttcatgctttcaccttctggtg---acagtgattcaactttcagaactgctcattttcttaaacccatttcaaactcca |
19811824 |
T |
|
| Q |
178 |
ttcatgaatcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttcactgggtggcgccaccc |
277 |
Q |
| |
|
|||||||| || |||||| |||||||||| ||| ||| | | ||| ||| ||| |||| |||||||| | ||||||| ||| ||||| ||||| |
|
|
| T |
19811825 |
ttcatgaaccagcttttgagtttaatccattttcatcatcttctttttttgatcaaaatgagtgtcctttgaaaatccatttcagtggatggcgtcaccc |
19811924 |
T |
|
| Q |
278 |
acaagacaaatgggtttgttgggttgatcagcttaaaccaaagcatgaatctgtgtggaagcaggttggaatctttgatgctattatgagcaccaagtgt |
377 |
Q |
| |
|
|||||| || |||||| | ||||||||| |||||||||||||| |||||||| |||||||| | | | |||||||||||||||||||||| ||||||||| |
|
|
| T |
19811925 |
acaagagaagtgggttagatgggttgatgagcttaaaccaaagtatgaatctttgtggaagaaagctagaatctttgatgctattatgagtaccaagtgt |
19812024 |
T |
|
| Q |
378 |
cgcatactgagaaatcaaaacttgctatatgaggttgcggagaaatggtgttctaagacaaatacatttgtgtttccatttgctgaagctacaatcactt |
477 |
Q |
| |
|
| |||||| | ||||| ||| ||||| | || ||||| ||||||||||||| | |||| || || ||||| |||||||||| |||||| || ||||||| |
|
|
| T |
19812025 |
cacatactcaaaaatctaaaattgctctttggggttgttgagaaatggtgttgtgagactaacacctttgtttttccatttggtgaagcaactatcactt |
19812124 |
T |
|
| Q |
478 |
tggaggatattatggttttgggtggttaccctgtcatcggcgatcctgttttcatctcacttgaagacacaaaaatgagagaggtagaaaacaaattgat |
577 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||| || |||||| |||| | | | || ||||| | ||||||||||||| ||||| || | || |
|
|
| T |
19812125 |
tggaggatattatggttttggggggttaccctatcattggtgatcctatttttaccaaagttcaagaccaagaaatgagagaggtggaaaagaagctcat |
19812224 |
T |
|
| Q |
578 |
ccttgcaagacagcaacttactaatcggaaacaacgtcacgcgtacacatcaatgtggatggatatgttcgctgataaaggtagtgaaattgaacatgaa |
677 |
Q |
| |
|
||||||||||| | ||| | | | ||| || || | || |||||||| ||||| |||| |||| || ||||||||||||||||||||||||| |
|
|
| T |
19812225 |
ccttgcaagacggaaaccttggcagagtaaaaaaggtaaggctaccacatcaaaatggatcaatattttcgttggtaaaggtagtgaaattgaacatgaa |
19812324 |
T |
|
| Q |
678 |
gcatttcttgctacttggctgtcaatttttgttttccctcataaata |
724 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
19812325 |
gcatttcttgctacttggttgtcaatttttgtttttcctcataaata |
19812371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 258 - 751
Target Start/End: Original strand, 19955700 - 19956202
Alignment:
| Q |
258 |
ttcactgggtggcgccacccacaagacaaatgggtttgttgggttgatcagcttaaaccaaagcatgaatctgtgtggaagcaggttggaatctttgatg |
357 |
Q |
| |
|
|||||||| ||||||| | ||||| | |||||||||| ||||||| || | ||||||| |||| |||||||||| |||| | | |||||||||||||||| |
|
|
| T |
19955700 |
ttcactggctggcgcctcacacaaaagaaatgggtttcttgggttcataaacttaaacaaaagtatgaatctgtttggaggaaagttggaatctttgatg |
19955799 |
T |
|
| Q |
358 |
ctattatgagcaccaagtgtcgcatactgagaaatcaaaacttgctatatgaggttgcggagaaatggtgttctaagacaaatacatttgtgtttccatt |
457 |
Q |
| |
|
|||| ||||| || || || ||| | | |||| |||||||||||| || |||| ||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
19955800 |
ctataatgagtactaaatgctacattcataaaaataaaaacttgctatttggagttgttgagaaatggtgttgtgagacaaatacatttgtgtttccatt |
19955899 |
T |
|
| Q |
458 |
tgctgaagctacaatcactttggaggatattatggttttgggtggttaccctgtcatcggcgatcctgttttcatctcacttgaagacacaaaaatgaga |
557 |
Q |
| |
|
|| ||| || |||||||||||||| ||| | ||||||||||| |||||||||||||| || ||| ||||||||| | | | ||||| | |||||||| |
|
|
| T |
19955900 |
tggtgaggcaacaatcactttggaagatgtcatggttttggggggttaccctgtcattggtgattctgttttcaccgaagtcaaagaccaagaaatgaga |
19955999 |
T |
|
| Q |
558 |
gaggtagaaaacaaattgatccttgcaagacagcaacttacta---atcggaaacaacg---tcacgcgtaca---catcaatgtggatggatatgttcg |
648 |
Q |
| |
|
||||| |||||||||||||| ||| || | |||||||||||| || ||||||| | | | ||| | ||||| | ||||||||||| ||| |
|
|
| T |
19956000 |
gaggtggaaaacaaattgatacttacattaaagcaacttactactgatgtgaaacaaggaggtaattcgtctagaacatcactatggatggatattttca |
19956099 |
T |
|
| Q |
649 |
ctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccgtgaaaagttgtttgtt |
748 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
19956100 |
ttgataaaggtagtgaaattgaacatgaagcttttcttgctacttggttgtcaatttttgttttccctcataaatattcttccgtgaaaagttatttgtt |
19956199 |
T |
|
| Q |
749 |
tcc |
751 |
Q |
| |
|
||| |
|
|
| T |
19956200 |
tcc |
19956202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 285 - 751
Target Start/End: Complemental strand, 20037072 - 20036603
Alignment:
| Q |
285 |
aaatgggtttgttgggttgatcagcttaaaccaaagcatgaatctgtgtggaagcaggttggaatctttgatgctattatgagcaccaagtgtcgcatac |
384 |
Q |
| |
|
|||||||||| ||||||| || | ||||||| ||| ||||||||||||||||| | |||||||||||||||||||||||| ||| |||||| ||||| |
|
|
| T |
20037072 |
aaatgggtttcttgggttcataaacttaaacaaaactatgaatctgtgtggaagaaagttggaatctttgatgctattatggccactaagtgttacatac |
20036973 |
T |
|
| Q |
385 |
tgagaaatcaaaacttgctatatgaggttgcggagaaatggtgttctaagacaaatacatttgtgtttccatttgctgaagctacaatcactttggagga |
484 |
Q |
| |
|
| | |||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||| | |||| |||||| ||| ||| ||||||||| |
|
|
| T |
20036972 |
ataaagatcaaaacttgctatatggggttgtggagaaatggtgttccaagacaaatacatttgtgttttcctttggtgaagcaacagtcattttggagga |
20036873 |
T |
|
| Q |
485 |
tattatggttttgggtggttaccctgtcatcggcgatcctgttttcatctcacttgaagacacaaaaatgagagaggtagaaaacaaattgatccttgca |
584 |
Q |
| |
|
||| |||||| | || ||||| ||||| | || ||||||||||||| |||||| | ||| | |||||| |||| | ||| | || | ||| ||||| |
|
|
| T |
20036872 |
tatcatggttctaggaggttatcctgttcttggtgatcctgttttcacttcacttcatgaccaagaaatgaaagagattgaagaaaagctcatcattgca |
20036773 |
T |
|
| Q |
585 |
agacagcaacttactaatcggaaaca---acgtcacgcgtacacatcaatgtggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcat |
681 |
Q |
| |
|
||||| |||||||||||| |||||| | || || ||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
20036772 |
agacaacaacttactaatgcgaaacatggaggtgtggctagcacatcatactggatggatattttcattgataaaggtagtgaaattgaacatgaagcat |
20036673 |
T |
|
| Q |
682 |
ttcttgctacttggctgtcaatttttgttttccctcataaatactcttccgtgaaaagttgtttgtttcc |
751 |
Q |
| |
|
|||||||||||||| ||||| |||||||||| ||||||||| ||| || |||||||||| ||||||||| |
|
|
| T |
20036672 |
ttcttgctacttggttgtcactttttgtttttcctcataaaaactatttggtgaaaagttctttgtttcc |
20036603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 258 - 722
Target Start/End: Original strand, 20045748 - 20046212
Alignment:
| Q |
258 |
ttcactgggtggcgccacccacaagacaaatgggtttgttgggttgatcagcttaaaccaaagcatgaatctgtgtggaagcaggttggaatctttgatg |
357 |
Q |
| |
|
|||||||||||||||||||| ||| | ||||||||| ||||| ||||| | || |||||||| |||||| ||||||||| | |||||||||||||| | |
|
|
| T |
20045748 |
ttcactgggtggcgccaccctcaacaaaaatgggttagttggcttgataaactcaaaccaaaatttgaatcggtgtggaaggaagttggaatctttgaag |
20045847 |
T |
|
| Q |
358 |
ctattatgagcaccaagtgtcgcatactgagaaatcaaaacttgctatatgaggttgcggagaaatggtgttctaagacaaatacatttgtgtttccatt |
457 |
Q |
| |
|
||||||||| | | |||||| |||| || | |||||| ||||| ||| | | ||||| |||||||||||||| | | |||||||||||| | ||||| || |
|
|
| T |
20045848 |
ctattatgaactcaaagtgttgcattcttaaaaatcagaacttactacaaggggttgtggagaaatggtgttgtgatacaaatacatttatttttccctt |
20045947 |
T |
|
| Q |
458 |
tgctgaagctacaatcactttggaggatattatggttttgggtggttaccctgtcatcggcgatcctgttttcatctcacttgaagacacaaaaatgaga |
557 |
Q |
| |
|
|| ||| | ||||| || ||||||||||| || |||||||| ||||||||| |||| ||||||| |||||||| | | || ||||| | |||||||| |
|
|
| T |
20045948 |
tggtgagacaacaataaccttggaggatatcattgttttgggaggttaccctatcattggcgatcatgttttcaccaaagttaaagaccaagaaatgaga |
20046047 |
T |
|
| Q |
558 |
gaggtagaaaacaaattgatccttgcaagacagcaacttactaatcggaaacaacgtcacgcgtacacatcaatgtggatggatatgttcgctgataaag |
657 |
Q |
| |
|
||||| ||||| |||||||||| || ||| |||| ||||| ||| |||| | |||| || ||||||||| | ||||||||||||||| ||||||| |
|
|
| T |
20046048 |
gaggtggaaaataaattgatccatgaaaggaagcagcttacaaataggaacgatggtcatgcttacacatcattatggatggatatgttcatcgataaag |
20046147 |
T |
|
| Q |
658 |
gtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaa |
722 |
Q |
| |
|
|||||||||||||||| ||||| || ||| |||||||| |||||||||||||||| ||||||||| |
|
|
| T |
20046148 |
gtagtgaaattgaacacgaagccttccttactacttggttgtcaatttttgtttttcctcataaa |
20046212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 78 - 751
Target Start/End: Original strand, 19837829 - 19838511
Alignment:
| Q |
78 |
atgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattaca |
177 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||| | | ||||||||| |||||||||||||||||| | ||||| ||| |||| | || |
|
|
| T |
19837829 |
atgatggaggtgagggaagatttcatgctttcacttgctggtgat---agtgaagcaacactcagaactgcccattttcttaaacctattgcaaactcca |
19837925 |
T |
|
| Q |
178 |
ttcatgaatcaccttttggttttaatccat---catcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttcactgggtggcgcca |
274 |
Q |
| |
|
|| | ||| |||||||| |||||| |||| |||| ||| ||| ||| | ||||| || | |||||| ||||||| ||| |||| | | |
|
|
| T |
19837926 |
ttgaagaaccaccttttaattttaagccattttcatcttcttcttctgtttttgagccaaatgattgtcctttgttaactcatttctatggctggcacta |
19838025 |
T |
|
| Q |
275 |
cccacaagacaaatgggtttgttgggttgatcagcttaaaccaaagcatgaatctgtgtggaagcaggttggaatctttgatgctattatgagcaccaag |
374 |
Q |
| |
|
| ||| ||||||||||||||||||||||| |||||||||||||| |||||||||| |||| | | |||||||||||||||||||| ||||| || || |
|
|
| T |
19838026 |
tcaccaacacaaatgggtttgttgggttgataagcttaaaccaaagtatgaatctgtttggaggaaagttggaatctttgatgctataatgagtactaaa |
19838125 |
T |
|
| Q |
375 |
tgtcgcatactgagaaatcaaaacttgctatatgaggttgcggagaaatggtgttctaagacaaatacatttgtgtttccatttgctgaagctacaatca |
474 |
Q |
| |
|
|| ||| | | |||| |||||||| ||| ||| |||| ||||||||||| | | |||| |||||||||||||||||||||| ||| || ||||||| |
|
|
| T |
19838126 |
tgctacattcataaaaataaaaacttgttatttgaagttgttgagaaatggtgctgtgagaccaatacatttgtgtttccatttggtgaggcaacaatca |
19838225 |
T |
|
| Q |
475 |
ctttggaggatattatggttttgggtggttaccctgtcatcggcgatcctgttttcatctcacttgaagacacaaaaatgagagaggtagaaaacaaatt |
574 |
Q |
| |
|
||||||| ||| | ||||||||||| |||||||||||||| || ||| ||||||||| | | | ||||| | ||||||||||||| ||||||||||| |
|
|
| T |
19838226 |
ctttggaagatgtcatggttttggggggttaccctgtcattggtgattctgttttcaccgaagtcaaagaccaagaaatgagagaggtggaaaacaaatt |
19838325 |
T |
|
| Q |
575 |
gatccttgcaagacagcaacttacta---atcggaaaca---acgtcacgcgt---acacatcaatgtggatggatatgttcgctgataaaggtagtgaa |
665 |
Q |
| |
|
||||||| || | |||||||||||| || |||||| | || | ||| |||||| | ||||||||||| ||| ||||||||||| ||| |
|
|
| T |
19838326 |
gatccttacattaaagcaacttactactgatgtgaaacaaggaggtaattcgtctagaacatcactatggatggatattttcatcgataaaggtagcgaa |
19838425 |
T |
|
| Q |
666 |
attgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccgtgaaaagttgtttgtttcc |
751 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| |||||||||||||||| ||| || || |||||| ||||||||| | ||||||||| |
|
|
| T |
19838426 |
attgaacatgaagcttttctagctacttggttgtcaatttttgtttttcctaatcaacactcttgcgtgaaaagctttttgtttcc |
19838511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 285 - 751
Target Start/End: Original strand, 19848639 - 19849108
Alignment:
| Q |
285 |
aaatgggtttgttgggttgatcagcttaaaccaaagcatgaatctgtgtggaagcaggttggaatctttgatgctattatgagcaccaagtgtcgcatac |
384 |
Q |
| |
|
|||||||||| ||||||| || | ||||||| ||| ||||||||||||||||| | |||||||||||||||||||||||| ||| ||||| | || |
|
|
| T |
19848639 |
aaatgggtttcttgggttcataaacttaaacaaaactatgaatctgtgtggaagaaagttggaatctttgatgctattatggccactaagtgctacttaa |
19848738 |
T |
|
| Q |
385 |
tgagaaatcaaaacttgctatatgaggttgcggagaaatggtgttctaagacaaatacatttgtgtttccatttgctgaagctacaatcactttggagga |
484 |
Q |
| |
|
| |||||||||||||||| || ||| | |||||||||||| |||| |||||||| ||||||||| | |||| |||||| ||||||||||||||||| |
|
|
| T |
19848739 |
ataaaaatcaaaacttgctagttggggtagttgagaaatggtgtcctaatacaaatacctttgtgttttcctttggtgaagcaacaatcactttggagga |
19848838 |
T |
|
| Q |
485 |
tattatggttttgggtggttaccctgtcatcggcgatcctgttttcatctcacttgaagacacaaaaatgagagaggtagaaaacaaattgatccttgca |
584 |
Q |
| |
|
||| |||||| | || ||||| ||||| | || ||||||||||||| |||||| | ||| | |||||| |||| | ||| | || | ||| ||||| |
|
|
| T |
19848839 |
tatcatggttctagggggttatcctgttcttggtgatcctgttttcacttcacttcatgaccaagaaatgaaagagattgaagaaaagctcatcattgca |
19848938 |
T |
|
| Q |
585 |
agacagcaacttactaatcggaaaca---acgtcacgcgtacacatcaatgtggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcat |
681 |
Q |
| |
|
||||| |||||||||||| |||||| | || || ||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19848939 |
agacaacaacttactaatgcgaaacatggaggtgtggctagcacatcatactggatggatattttcattgataaaggtagtgaaattgaacatgaagcat |
19849038 |
T |
|
| Q |
682 |
ttcttgctacttggctgtcaatttttgttttccctcataaatactcttccgtgaaaagttgtttgtttcc |
751 |
Q |
| |
|
|||||||||||||| ||||| |||||||||| ||||||||| ||| || |||||||||| ||||||||| |
|
|
| T |
19849039 |
ttcttgctacttggttgtcactttttgtttttcctcataaaaactatttggtgaaaagttctttgtttcc |
19849108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 119 - 719
Target Start/End: Original strand, 26646496 - 26647090
Alignment:
| Q |
119 |
tggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacattcatgaatcaccttttggttttaatccatcatcaatgtct |
218 |
Q |
| |
|
|||||||| || | |||||||||||| ||||||||| | ||||| ||| |||| |||||||||| || |||||| ||||| | ||||||| |||| |
|
|
| T |
26646496 |
tggtgacagtgcaccaactctcagaatcgcccattttctgaaaccaattgcaaacaccattcatgaaccagcttttgagtttaaacaatcatcaccgtct |
26646595 |
T |
|
| Q |
219 |
cgtgtctttcatccaaaggagtcgcctttgaagtttcatttcactgggtggcgccacccacaagacaaatgggtttgttgggttgatcagcttaaaccaa |
318 |
Q |
| |
|
||| ||| | |||||||||| ||||||||| | | |||||||| ||||| | ||||| | |||||||||| | ||||||||||| ||||||| | |
|
|
| T |
26646596 |
tctgtttttgaaccaaaggagtggcctttgaaaatcaacttcactggttggcgtcgcccacgcgccaaatgggttagatgggttgatcaacttaaactca |
26646695 |
T |
|
| Q |
319 |
agcatgaatctgtgtggaagcaggttggaatctttgatgctattatgagcaccaagtgtcgcatactgagaaatcaaaacttgctatatgaggttgcgga |
418 |
Q |
| |
|
| ||||| | ||||||||| | ||||| |||||||| || || ||| |||| | ||| ||||||| | |||||| |||||||||||| ||| | || |
|
|
| T |
26646696 |
aatatgaaacagtgtggaagaaagttggcatctttgaagcaataatgggcacaaggtgccgcatacataaaaatcatgacttgctatatggggtagttga |
26646795 |
T |
|
| Q |
419 |
gaaatggtgttctaagacaaatacatttgtgtttccatttgctgaagctacaatcactttggaggatattatggttttgggtggttaccctgtcatcggc |
518 |
Q |
| |
|
||||||||||| | |||||||||| |||||| || | |||| |||||| || || |||||||||||||| ||||||||||| ||||| ||| | || || |
|
|
| T |
26646796 |
gaaatggtgttgtgagacaaatacctttgtgattgcctttggtgaagcaactattactttggaggatatcatggttttggggggttatcctattattggg |
26646895 |
T |
|
| Q |
519 |
gatcctgttttcatctcacttgaagacacaaaaatgagagaggtagaaaacaaattgatccttgcaagacagcaacttactaatcggaaacaacgtcacg |
618 |
Q |
| |
|
|||||||||||||| |||||||||||| | ||||||||||||| ||||| ||| | |||||||||||| |||||||| ||| ||| || | | |
|
|
| T |
26646896 |
gatcctgttttcatttcacttgaagaccaagaaatgagagaggtggaaaagaaactcatccttgcaagagagcaactttgtaa------acacggtaagg |
26646989 |
T |
|
| Q |
619 |
cgtacacatcaatgtggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctca |
718 |
Q |
| |
|
| ||| || | ||||| |||| ||| |||||||||||||||||||||||||||||||| ||| |||||||| ||||| ||| |||||| ||||| |
|
|
| T |
26646990 |
ctagaacaccattatggatcgatagtttcatggataaaggtagtgaaattgaacatgaagcattcctttctacttggttgtcagtttatgtttttcctca |
26647089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 285 - 596
Target Start/End: Original strand, 19989174 - 19989485
Alignment:
| Q |
285 |
aaatgggtttgttgggttgatcagcttaaaccaaagcatgaatctgtgtggaagcaggttggaatctttgatgctattatgagcaccaagtgtcgcatac |
384 |
Q |
| |
|
|||||||||| |||||||||||| |||||||| || ||||| |||||||||| | ||||| |||||||| ||||||||||| ||||||||| ||||| |
|
|
| T |
19989174 |
aaatgggtttattgggttgatcaacttaaacccaaatttgaatatgtgtggaagaaagttggcatctttgaagctattatgagtaccaagtgttgcataa |
19989273 |
T |
|
| Q |
385 |
tgagaaatcaaaacttgctatatgaggttgcggagaaatggtgttctaagacaaatacatttgtgtttccatttgctgaagctacaatcactttggagga |
484 |
Q |
| |
|
|| | |||| |||||||||| || ||||| ||||||||||||| | ||||||| |||||||| |||||||||| ||| || || ||||||||||| || |
|
|
| T |
19989274 |
agaaagatcataacttgctatttggggttgttgagaaatggtgttgtgagacaaacacatttgtttttccatttggtgaggcaactatcactttggaaga |
19989373 |
T |
|
| Q |
485 |
tattatggttttgggtggttaccctgtcatcggcgatcctgttttcatctcacttgaagacacaaaaatgagagaggtagaaaacaaattgatccttgca |
584 |
Q |
| |
|
| |||||||||| || ||||||||| | | || |||||||||||||| ||||| ||||| | |||||| |||||| ||||| |||||||||||| | |
|
|
| T |
19989374 |
tgttatggttttagggggttaccctattcttggtgatcctgttttcattacacttcaagaccaagaaatgaaagaggtggaaaaggaattgatccttgaa |
19989473 |
T |
|
| Q |
585 |
agacagcaactt |
596 |
Q |
| |
|
|||||||||||| |
|
|
| T |
19989474 |
agacagcaactt |
19989485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 80 - 721
Target Start/End: Original strand, 19818004 - 19818645
Alignment:
| Q |
80 |
gatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacatt |
179 |
Q |
| |
|
||||||||| || |||||||||||||| ||||||||||||| ||| ||| |||| ||||||||||| |||||| | || || || |||| | |||| |
|
|
| T |
19818004 |
gatggaggttagagaagatttcatgctttcacctgctggtg---acagtgatccaacactcagaactgctcattttctcaagcctgttgcaaactccatt |
19818100 |
T |
|
| Q |
180 |
catgaatcaccttttggttttaatccat---catcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttcactgggtggcgccacc |
276 |
Q |
| |
|
||||| ||||||||| ||||||||| ||||| || ||| ||| ||||||| |||| |||||||| | ||||||| ||| |||||||| | |
|
|
| T |
19818101 |
gatgaaccaccttttgagcttaatccattttcatcatcttcatctgtttttgatccaaatgagtgtcctttgaaaatacatttcaatggatggcgccaac |
19818200 |
T |
|
| Q |
277 |
cacaagacaaatgggtttgttgggttgatcagcttaaaccaaagcatgaatctgtgtggaagcaggttggaatctttgatgctattatgagcaccaagtg |
376 |
Q |
| |
|
|||||| |||||| || ||||||||||| | |||||||||||| ||||||||||||||||| | | | |||||||||||||||||||||| || || || |
|
|
| T |
19818201 |
aacaagagaaatggtttagttgggttgatgaacttaaaccaaagtatgaatctgtgtggaagaaagctagaatctttgatgctattatgagtactaaatg |
19818300 |
T |
|
| Q |
377 |
tcgcatactgagaaatcaaaacttgctatatgaggttgcggagaaatggtgttctaagacaaatacatttgtgtttccatttgctgaagctacaatcact |
476 |
Q |
| |
|
||| | | ||||||||||||||||| || ||||| ||||||||||||| | |||| || || ||||| |||||||||| ||| || || |||||| |
|
|
| T |
19818301 |
ctacattcataaaaatcaaaacttgctatttggggttgttgagaaatggtgttgtgagactaacacctttgtttttccatttggtgaggcaactatcact |
19818400 |
T |
|
| Q |
477 |
ttggaggatattatggttttgggtggttaccctgtcatcggcgatcctgttttcatctcacttgaagacacaaaaatgagagaggtagaaaacaaattga |
576 |
Q |
| |
|
||||||||| | || |||||||| ||||| ||| |||| || ||||||||||||||| | || |||| | ||||||||||||| ||||| || | | |
|
|
| T |
19818401 |
ttggaggatgtcatagttttggggggttatcctatcattggtgatcctgttttcatcaaagttaaagatcaagaaatgagagaggttgaaaagaagctca |
19818500 |
T |
|
| Q |
577 |
tccttgcaagacagcaacttactaatcggaaacaacgtcacgcgtacacatcaatgtggatggatatgttcgctgataaaggtagtgaaattgaacatga |
676 |
Q |
| |
|
|| ||||||||||| ||| | | || ||| | | || |||||||| |||||||| || || || |||||||| |||||||||||||| |
|
|
| T |
19818501 |
tcattgcaagacagaaaccttggcagactaatcaagctaaggctaccacatcaaaatggatggaaatttttattggtaaaggtaccgaaattgaacatga |
19818600 |
T |
|
| Q |
677 |
agcatttcttgctacttggctgtcaatttttgttttccctcataa |
721 |
Q |
| |
|
||| ||||||||||||||| | |||||||||||||| |||||||| |
|
|
| T |
19818601 |
agcttttcttgctacttggttatcaatttttgtttttcctcataa |
19818645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 285 - 721
Target Start/End: Original strand, 19950776 - 19951212
Alignment:
| Q |
285 |
aaatgggtttgttgggttgatcagcttaaaccaaagcatgaatctgtgtggaagcaggttggaatctttgatgctattatgagcaccaagtgtcgcatac |
384 |
Q |
| |
|
||||||| |||||| |||| ||||||||||||||| ||||||||||||||||| | | |||||||||||||||||||||||| || || | |||| |
|
|
| T |
19950776 |
aaatgggaatgttggtttgagcagcttaaaccaaagtatgaatctgtgtggaagaaagctggaatctttgatgctattatgagtactaaaagcataatac |
19950875 |
T |
|
| Q |
385 |
tgagaaatcaaaacttgctatatgaggttgcggagaaatggtgttctaagacaaatacatttgtgtttccatttgctgaagctacaatcactttggagga |
484 |
Q |
| |
|
| |||||| |||||||| | || ||||| |||||||||||| || |||| |||||||||||||||||||||| ||| || || |||||||||||||| |
|
|
| T |
19950876 |
ataaaaatcataacttgctttttggggttgttgagaaatggtgtactgagaccaatacatttgtgtttccatttggtgaggcaactatcactttggagga |
19950975 |
T |
|
| Q |
485 |
tattatggttttgggtggttaccctgtcatcggcgatcctgttttcatctcacttgaagacacaaaaatgagagaggtagaaaacaaattgatccttgca |
584 |
Q |
| |
|
| ||||||||||||| ||||||||||| | || |||||||||||||| ||||| |||| | |||||| |||||| ||| | || | ||| ||||| |
|
|
| T |
19950976 |
tgttatggttttggggggttaccctgttcttggtgatcctgttttcattacacttcaagatcaagaaatgaaagaggttgaagaaaagctcatcattgca |
19951075 |
T |
|
| Q |
585 |
agacagcaacttactaatcggaaacaacgtcacgcgtaca-catcaatgtggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcattt |
683 |
Q |
| |
|
|||||| |||| |||| ||| | || | | || | || || | ||||||||||| ||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
19951076 |
agacagacactttctaagactaaaacaggt-atggctagagcaacattatggatggatattttcactgataaaggtagtgaaattgaacatgaagccttc |
19951174 |
T |
|
| Q |
684 |
cttgctacttggctgtcaatttttgttttccctcataa |
721 |
Q |
| |
|
|||| ||||||| ||||| |||||||||| ||| |||| |
|
|
| T |
19951175 |
cttgttacttggttgtcactttttgtttttcctaataa |
19951212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 333 - 544
Target Start/End: Original strand, 19853212 - 19853423
Alignment:
| Q |
333 |
tggaagcaggttggaatctttgatgctattatgagcaccaagtgtcgcatactgagaaatcaaaacttgctatatgaggttgcggagaaatggtgttcta |
432 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||| || ||| | ||||| || | ||||||||||| ||| || ||||| || |||||||||||| |
|
|
| T |
19853212 |
tggaagaaagttggaatctttgatgctattatgagtactaagagctgcataaagaaagatcaaaacttgttatgtggggttgttgacaaatggtgttctg |
19853311 |
T |
|
| Q |
433 |
agacaaatacatttgtgtttccatttgctgaagctacaatcactttggaggatattatggttttgggtggttaccctgtcatcggcgatcctgttttcat |
532 |
Q |
| |
|
|||| |||||||||||||| ||||||| |||||| ||||| |||||||||||| ||||||||||||| ||||||||| |||| || |||||| |||||| |
|
|
| T |
19853312 |
agaccaatacatttgtgttcccatttggtgaagcaacaataactttggaggatgttatggttttggggggttaccctatcattggtgatcctattttcaa |
19853411 |
T |
|
| Q |
533 |
ctcacttgaaga |
544 |
Q |
| |
|
||||||||||| |
|
|
| T |
19853412 |
atcacttgaaga |
19853423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 624 - 751
Target Start/End: Complemental strand, 24840101 - 24839974
Alignment:
| Q |
624 |
acatcaatgtggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaat |
723 |
Q |
| |
|
|||||| ||||||||||||| ||| ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24840101 |
acatcagtgtggatggatattttcatcgataaaggtagtgaagttgagcatgaagcatttcttgctacttggttgtcaatttttgttttccctcataaat |
24840002 |
T |
|
| Q |
724 |
actcttccgtgaaaagttgtttgtttcc |
751 |
Q |
| |
|
||||| |||||| ||| ||||||||| |
|
|
| T |
24840001 |
actctctagtgaaatgttctttgtttcc |
24839974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 631 - 751
Target Start/End: Original strand, 19858070 - 19858190
Alignment:
| Q |
631 |
tgtggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttc |
730 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||| ||| ||||| | |
|
|
| T |
19858070 |
tgtggatggatattttcatcgataaaggtagtgaaattgagcatgaagcatttcttgctacttggttgtcaatttttgtttttcctaatagatactttaa |
19858169 |
T |
|
| Q |
731 |
cgtgaaaagttgtttgtttcc |
751 |
Q |
| |
|
|||||||| | ||||||||| |
|
|
| T |
19858170 |
tgtgaaaagatctttgtttcc |
19858190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 297 - 531
Target Start/End: Original strand, 19857734 - 19857969
Alignment:
| Q |
297 |
tgggttgatcagcttaaaccaaagcatgaatctgtgtggaagcaggttggaatctttgatgctattatgagcaccaagtgtcgcatactgagaaatcaaa |
396 |
Q |
| |
|
|||||||| || ||| ||||||| ||||||||||||||||| | | || ||| ||||||||||||| ||| || || || |||||| ||| | ||| || |
|
|
| T |
19857734 |
tgggttgaccaacttcaaccaaaatatgaatctgtgtggaagaaagctgaaatttttgatgctattaggagtactaaatgccgcataatgaaagatccaa |
19857833 |
T |
|
| Q |
397 |
acttgctatatgaggttgcggagaaatggtgttctaaga-caaatacatttgtgtttccatttgctgaagctacaatcactttggaggatattatggttt |
495 |
Q |
| |
|
||||| | |||| ||||| || |||||||||||| ||| | |||||||| |||||||| |||| |||||| ||||| ||| | |||||| || |||||| |
|
|
| T |
19857834 |
acttggtttatggggttgttgacaaatggtgttctgagacccaatacattcgtgtttccctttggtgaagcaacaattactatagaggatgttgtggttt |
19857933 |
T |
|
| Q |
496 |
tgggtggttaccctgtcatcggcgatcctgttttca |
531 |
Q |
| |
|
|||| |||||| || || | || ||||||||||||| |
|
|
| T |
19857934 |
tggggggttactctctctttggtgatcctgttttca |
19857969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 623 - 725
Target Start/End: Original strand, 19943710 - 19943810
Alignment:
| Q |
623 |
cacatcaatgtggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaa |
722 |
Q |
| |
|
||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| | |
|
|
| T |
19943710 |
cacatcagtgtggatggatattttcatcgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcaa--tttgtttttcctcataga |
19943807 |
T |
|
| Q |
723 |
tac |
725 |
Q |
| |
|
||| |
|
|
| T |
19943808 |
tac |
19943810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 653 - 751
Target Start/End: Original strand, 19853532 - 19853630
Alignment:
| Q |
653 |
taaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccgtgaaaagttgtttgtttcc |
751 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| ||||| | |||||||| | ||||||||| |
|
|
| T |
19853532 |
taaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtctatttttgtttttcctcatagatactttattgtgaaaagatctttgtttcc |
19853630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 650 - 718
Target Start/End: Original strand, 30914660 - 30914728
Alignment:
| Q |
650 |
tgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctca |
718 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||| |
|
|
| T |
30914660 |
tgataaagttagtgaaattgaacatgaagcattccttactacttggttgtcaatttttgttttccctca |
30914728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 633 - 710
Target Start/End: Original strand, 19989522 - 19989599
Alignment:
| Q |
633 |
tggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgtt |
710 |
Q |
| |
|
||||||||| | ||| ||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19989522 |
tggatggatgttttcattgataaaggtaatgaacttgaacatgaagcatttcttgctacttggttgtcaatttttgtt |
19989599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 655 - 720
Target Start/End: Original strand, 26653174 - 26653239
Alignment:
| Q |
655 |
aaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcata |
720 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||| ||||||| |
|
|
| T |
26653174 |
aaggtagtgaaattgaacatgatgcattccttgcagcttggttgtcaatttttgtttttcctcata |
26653239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 417 - 511
Target Start/End: Complemental strand, 20005319 - 20005225
Alignment:
| Q |
417 |
gagaaatggtgttctaagacaaatacatttgtgtttccatttgctgaagctacaatcactttggaggatattatggttttgggtggttaccctgt |
511 |
Q |
| |
|
||||||||||||| | | ||||| || |||||||||| ||||| |||||| |||||||||||||| ||| | || |||||||| ||||| ||||| |
|
|
| T |
20005319 |
gagaaatggtgttgtgaaacaaacacctttgtgtttctatttggtgaagcaacaatcactttggaagatgtcattgttttggggggttatcctgt |
20005225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 19848439 - 19848483
Alignment:
| Q |
76 |
ctatgatggaggtgagggaagatttcatgctctcacctgctggtg |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
19848439 |
ctatgatggaggtgagggaagatttcatgctttcaccagctggtg |
19848483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 19955517 - 19955608
Alignment:
| Q |
78 |
atgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaa |
172 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| ||||||| | | ||| |||| |||||||| ||||||||| | |||||||||||||| |
|
|
| T |
19955517 |
atgatggaggtgagggaagagttcatgctttcaccagctggtgat---agtgatccaacactcagaacagcccattttcttaaacccatttcaaa |
19955608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 208
Target Start/End: Original strand, 19988977 - 19989103
Alignment:
| Q |
79 |
tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat |
178 |
Q |
| |
|
|||||||||||| ||||||| |||||| ||||| ||||||| ||| |||| ||| |||||||| ||||||||| | |||||||||||||| ||| |
|
|
| T |
19988977 |
tgatggaggtgaaggaagatcacatgctttcaccagctggtg---acagtgaaccaattctcagaatcgcccattttctcaaacccatttcaaacaccat |
19989073 |
T |
|
| Q |
179 |
tcatgaatcaccttttggttttaatccatc |
208 |
Q |
| |
|
| | ||| |||||| ||| ||||||||||| |
|
|
| T |
19989074 |
tgaagaaccaccttctgggtttaatccatc |
19989103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 417 - 499
Target Start/End: Original strand, 19943503 - 19943585
Alignment:
| Q |
417 |
gagaaatggtgttctaagacaaatacatttgtgtttccatttgctgaagctacaatcactttggaggatattatggttttggg |
499 |
Q |
| |
|
||||||||||||| | | ||||| || |||||||||| ||||| |||||| |||||||||||||| ||| | || |||||||| |
|
|
| T |
19943503 |
gagaaatggtgttgtgaaacaaacacctttgtgtttctatttggtgaagcaacaatcactttggaagatgtcattgttttggg |
19943585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 417 - 499
Target Start/End: Complemental strand, 24840308 - 24840226
Alignment:
| Q |
417 |
gagaaatggtgttctaagacaaatacatttgtgtttccatttgctgaagctacaatcactttggaggatattatggttttggg |
499 |
Q |
| |
|
||||||||||||| | | ||||| || || ||||||| ||||| |||||| |||||||||||||||||| | || |||||||| |
|
|
| T |
24840308 |
gagaaatggtgttgtgaaacaaacaccttcgtgtttctatttggtgaagcaacaatcactttggaggatgtcattgttttggg |
24840226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 297 - 499
Target Start/End: Original strand, 26651697 - 26651899
Alignment:
| Q |
297 |
tgggttgatcagcttaaaccaaagcatgaatctgtgtggaagcaggttggaatctttgatgctattatgagcaccaagtgtcgcatactgagaaatcaaa |
396 |
Q |
| |
|
||||||||||| ||||| || ||| ||||||| |||||||| | | || |||||||| |||| ||||| || ||| | ||| || ||| ||||||| |
|
|
| T |
26651697 |
tgggttgatcaacttaagcccaagtatgaatcagtgtggaaaaaagccggcatctttgaacctataatgagtactaagagccgcgtaatgaaaaatcaag |
26651796 |
T |
|
| Q |
397 |
acttgctatatgaggttgcggagaaatggtgttctaagacaaatacatttgtgtttccatttgctgaagctacaatcactttggaggatattatggtttt |
496 |
Q |
| |
|
||||| | |||| | || | |||||||||||| | |||||||| ||||| ||||| |||| ||| || |||||||||||||||||| | || ||||| |
|
|
| T |
26651797 |
acttggtttatgggatttctgagaaatggtgtagtgagacaaattgctttgtttttccttttggtgaggcaacaatcactttggaggatgtcattgtttt |
26651896 |
T |
|
| Q |
497 |
ggg |
499 |
Q |
| |
|
||| |
|
|
| T |
26651897 |
ggg |
26651899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 79 - 532
Target Start/End: Original strand, 9814483 - 9814936
Alignment:
| Q |
79 |
tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat |
178 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| | |||| ||| |||||||||||| |||| || |||||| |||||||||||||||||| ||| |
|
|
| T |
9814483 |
tgatggaggtgagggaagatttcatgatctcaccaac---tggtcacagtgaagcaactcttagaatggctcattttctaaaacccatttcaaattccat |
9814579 |
T |
|
| Q |
179 |
tcatga---atcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttcactgggtggcgccac |
275 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||| ||||| ||| ||| ||||||| |||| ||||||||| || ||||||| ||| ||||| || |
|
|
| T |
9814580 |
tcatgaaccatcaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggcctttgaaattccatttcaatggatggcgttac |
9814679 |
T |
|
| Q |
276 |
ccacaagacaaatgggtttgttgggttgatcagcttaaaccaaagcatgaatctgtgtggaagcaggttggaatctttgatgctattatgagcaccaagt |
375 |
Q |
| |
|
|||||||| |||||| ||| |||||||||||| |||||||||||| |||||||| |||||||| | || || |||||||||||||| ||||| ||||||| |
|
|
| T |
9814680 |
ccacaagagaaatggatttattgggttgatcaacttaaaccaaagtatgaatctttgtggaagaaagtaggtatctttgatgctataatgagtaccaagt |
9814779 |
T |
|
| Q |
376 |
gtcgcatactgagaaatcaaaacttgctatatgaggttgcggagaaatggtgttctaagacaaatacatttgtgtttccatttgctgaagctacaatcac |
475 |
Q |
| |
|
| |||||| ||| | |||||||||||||||||| ||||| ||||||||||||| |||||| ||||||||||||||||| |||| ||| || || || | |
|
|
| T |
9814780 |
gccgcataatgaaagatcaaaacttgctatatggggttgttgagaaatggtgttgtaagacgaatacatttgtgtttccgtttggtgaggcgacgattag |
9814879 |
T |
|
| Q |
476 |
tttggaggatattatggttttgggtggttaccctgtcatcggcgatcctgttttcat |
532 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| ||||||||||| |||||| ||||||| |
|
|
| T |
9814880 |
tttggaggatgttatggttttggggggttatcctgtcatcggtgatcctattttcat |
9814936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 81 - 530
Target Start/End: Complemental strand, 26355594 - 26355148
Alignment:
| Q |
81 |
atggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacattc |
180 |
Q |
| |
|
||||||| |||||||||||||||||||||||| | |||| ||| |||||||||| |||||| ||||||||| |||||||||||||||||| ||||| |
|
|
| T |
26355594 |
atggaggagagggaagatttcatgctctcaccagatggtc---acagtgaagcaactttcagaatagcccattttctaaaacccatttcaaattccattc |
26355498 |
T |
|
| Q |
181 |
atgaatcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttcactgggtggcgccacccaca |
280 |
Q |
| |
|
||||| ||||||||| ||||| ||||||||||||||| || ||| | ||||| |||| |||||| | | | |||| ||| ||||| || ||| |
|
|
| T |
26355497 |
atgaacaaccttttggctttaacccatcatcaatgtcttacgtgtttgacccaaaagagtggcctttaacaatcaagttcattggttggcgacaaaaaca |
26355398 |
T |
|
| Q |
281 |
agacaaatgggtttgttgggttgatcagcttaaaccaaagcatgaatctgtgtggaagcaggttggaatctttgatgctattatgagcaccaagtgtcgc |
380 |
Q |
| |
|
| ||||||| ||||||||||||||| ||||| | || ||||| | || |||||| | | ||| || ||||||||||| ||||| ||||| || ||| |
|
|
| T |
26355397 |
accgaaatggggttgttgggttgatcaacttaagctcaaatatgaaccggtttggaagaaagctgggatttttgatgctataatgagtaccaaatgccgc |
26355298 |
T |
|
| Q |
381 |
atactgagaaatcaaaacttgctatatgaggttgcggagaaatggtgttctaagacaaatacatttgtgtttccatttgctgaagctacaatcactttgg |
480 |
Q |
| |
|
||||||| ||||||||||||||| || | ||||| |||||||||||||| | |||| ||||||||||||||||| |||| ||| || || | ||||| |
|
|
| T |
26355297 |
atactgaaaaatcaaaacttgctttacggggttgtggagaaatggtgttgtgagactaatacatttgtgtttccgtttggtgaggcgacggtaggtttgg |
26355198 |
T |
|
| Q |
481 |
aggatattatggttttgggtggttaccctgtcatcggcgatcctgttttc |
530 |
Q |
| |
|
||||| |||||||| | || |||||||||||||| || |||||| ||||| |
|
|
| T |
26355197 |
aggatgttatggttcttgggggttaccctgtcattggtgatcctattttc |
26355148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 79 - 306
Target Start/End: Complemental strand, 2319706 - 2319479
Alignment:
| Q |
79 |
tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat |
178 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| | |||| ||| |||||||||||| |||| || |||||| |||||||||||||||||| ||| |
|
|
| T |
2319706 |
tgatggaggtgagggaagatttcatgatctcaccaac---tggtcacagtgaagcaactcttagaatggctcattttctaaaacccatttcaaattccat |
2319610 |
T |
|
| Q |
179 |
tcatga---atcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttcactgggtggcgccac |
275 |
Q |
| |
|
| |||| || ||||||||||||||| ||||||||| ||||| ||| ||| ||||||| |||| ||||||||| || ||||||| ||| ||||| ||| |
|
|
| T |
2319609 |
ttatgaaccatgaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggcctttgaaattccatttcaatggatggcgtcac |
2319510 |
T |
|
| Q |
276 |
ccacaagacaaatgggtttgttgggttgatc |
306 |
Q |
| |
|
|||||||| |||||| ||| ||||||||||| |
|
|
| T |
2319509 |
ccacaagagaaatggatttattgggttgatc |
2319479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 417 - 589
Target Start/End: Complemental strand, 38435465 - 38435286
Alignment:
| Q |
417 |
gagaaatggtgttctaagacaaatacatttgtgtttccatttgctgaagctacaatcactttggaggatattatggttttgggtggttaccctgtcatc- |
515 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||| ||| || ||| ||||||||||| || ||||| ||||||||||| ||||| || | ||| |
|
|
| T |
38435465 |
gagaaatggtgttgtaagaccaatacatttgtgtttccacttggtgtagcaacaatcacttttgaagatatcatggttttggg-ggttatccacttatcc |
38435367 |
T |
|
| Q |
516 |
-------ggcgatcctgttttcatctcacttgaagacacaaaaatgagagaggtagaaaacaaattgatccttgcaagaca |
589 |
Q |
| |
|
| ||||||||||||| | || |||||||| | ||||||||||||| ||||| |||||||| ||||||||||| |
|
|
| T |
38435366 |
tatacttgatgatcctgttttcaccacagttgaagaccaagaaatgagagaggtggaaaagaaattgatacttgcaagaca |
38435286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 654 - 723
Target Start/End: Original strand, 9815058 - 9815127
Alignment:
| Q |
654 |
aaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaat |
723 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||||| ||| ||||||| |||||||| ||||||||| |
|
|
| T |
9815058 |
aaaggtagtgaaattgagcatgaagcgttcattgctacgtggttgtcaatctttgttttaactcataaat |
9815127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 651 - 712
Target Start/End: Complemental strand, 26355027 - 26354966
Alignment:
| Q |
651 |
gataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgtttt |
712 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||| | ||||| | |||||||||||||| |
|
|
| T |
26355027 |
gataaaggtagtgaagttgaacatgaagcattcattgttgcttggttatcaatttttgtttt |
26354966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 5e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 297 - 722
Target Start/End: Original strand, 1716875 - 1717303
Alignment:
| Q |
297 |
tgggttgatcagcttaaaccaaagcatgaatctgtgtggaagcaggttggaatctttgatgctattatgagcaccaagtgtcgc---atactgagaaatc |
393 |
Q |
| |
|
||||||||| | ||||||| || |||||| | ||||||||| | ||||| |||||||| ||||| ||||||||||||||||| ||| || ||||| |
|
|
| T |
1716875 |
tgggttgatgaacttaaactcaaacatgaaacagtgtggaagaaagttggcatctttgaagctataatgagcaccaagtgtcgtcgtataaagaaaaatc |
1716974 |
T |
|
| Q |
394 |
aaaacttgctatatgaggttgcggagaaatggtgttctaagacaaatacatttgtgtttccatttgctgaagctacaatcactttggaggatattatggt |
493 |
Q |
| |
|
|||||||| |||||| | ||| || |||||||||| | |||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
1716975 |
aaaacttgttatatgggattgttgaaaaatggtgttgtgagacaaatacatttgtgtttccttttggtgaagccacaatcactttggaggatattatggt |
1717074 |
T |
|
| Q |
494 |
tttgggtggttaccctgtcatcggcgatcctgttttcatctcacttgaagacacaaaaatgagagaggtagaaaacaaattgatccttgcaagacagcaa |
593 |
Q |
| |
|
||| || | |||||||||||| || |||||||||||| | || ||||||||| | |||||| |||| | ||| | |||||||||||||||||| | ||| |
|
|
| T |
1717075 |
tttaggggattaccctgtcattggtgatcctgttttcgtttcgcttgaagaccaagaaatgaaagagattgaagataaattgatccttgcaagagaacaa |
1717174 |
T |
|
| Q |
594 |
cttactaatcggaaacaa--cgtcacgcgta-cacatcaatgtggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgcta |
690 |
Q |
| |
|
|| | || |||||||| | | || || ||| || | ||||||||| | || | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1717175 |
ct---ttataggaaacaaggaggtaggcctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgcta |
1717271 |
T |
|
| Q |
691 |
cttggctgtcaatttttgttttccctcataaa |
722 |
Q |
| |
|
||||| |||| ||| |||||| ||||||||| |
|
|
| T |
1717272 |
cttggttgtcggtttatgtttttcctcataaa |
1717303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 1716671 - 1716752
Alignment:
| Q |
81 |
atggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaaccca |
165 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||| |||| | |||| |||| ||||||| ||||||||| | ||||||| |
|
|
| T |
1716671 |
atggaggtgagggaagatttcatgctttcac---ctggttgtgagaatgaaccaacattcagaacagcccattttctcaaaccca |
1716752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 2e-42; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 391 - 726
Target Start/End: Complemental strand, 22652448 - 22652113
Alignment:
| Q |
391 |
atcaaaacttgctatatgaggttgcggagaaatggtgttctaagacaaatacatttgtgtttccatttgctgaagctacaatcactttggaggatattat |
490 |
Q |
| |
|
|||| |||||||||| || ||||| ||||||||||| | | ||||||| |||||||||||||||||| ||| || || ||||| || || ||| |||| |
|
|
| T |
22652448 |
atcataacttgctatttggggttgttgagaaatggtgctgtgagacaaactcatttgtgtttccatttggtgaggcaactatcaccttagaagatgttat |
22652349 |
T |
|
| Q |
491 |
ggttttgggtggttaccctgtcatcggcgatcctgttttcatctcacttgaagacacaaaaatgagagaggtagaaaacaaattgatccttgcaagacag |
590 |
Q |
| |
|
| |||| | ||||||||||| | || |||||||||||||||||||||||||| ||| ||||||||||| ||||| || |||||||||||||||| |
|
|
| T |
22652348 |
gattttagagggttaccctgttcttggtgatcctgttttcatctcacttgaagatgaaaagatgagagaggtggaaaagaagatgatccttgcaagacaa |
22652249 |
T |
|
| Q |
591 |
caacttactaatcggaaacaacgtcacgcgtaca-catcaatgtggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgct |
689 |
Q |
| |
|
| || ||| | ||||||| |||| || || | || || | ||||||||||| ||| ||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
22652248 |
acaatttctactaagaaacaaagtcaggc-tagagcaacattatggatggatattttcatcgataaaggtagtgaaattgaacatgaagcgttccttgct |
22652150 |
T |
|
| Q |
690 |
acttggctgtcaatttttgttttccctcataaatact |
726 |
Q |
| |
|
|||||| |||||||||||||||| |||||| ||||| |
|
|
| T |
22652149 |
acttggttgtcaatttttgtttttgctcatagatact |
22652113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 651 - 722
Target Start/End: Complemental strand, 22689755 - 22689684
Alignment:
| Q |
651 |
gataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaa |
722 |
Q |
| |
|
||||| |||| |||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
22689755 |
gataatggtaatgaatttgaacatgaagcatttcttgctacttggttgtcaatttttgtttttcctcataaa |
22689684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 653 - 722
Target Start/End: Complemental strand, 22685778 - 22685709
Alignment:
| Q |
653 |
taaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaa |
722 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||| ||||| |||||||||| ||||||||| |
|
|
| T |
22685778 |
taaaggtagtgaaattgagcatgaagcatttcttgctgcttggttgtcactttttgtttttcctcataaa |
22685709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 722
Target Start/End: Complemental strand, 11564232 - 11564163
Alignment:
| Q |
653 |
taaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaa |
722 |
Q |
| |
|
||||| |||| ||||||||||||||||||| || || | ||||| || ||||||||||| ||||||||| |
|
|
| T |
11564232 |
taaagctagtaaaattgaacatgaagcattcatttctgcatggctttccatttttgtttttcctcataaa |
11564163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 2e-42; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 81 - 306
Target Start/End: Complemental strand, 55864696 - 55864471
Alignment:
| Q |
81 |
atggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacattc |
180 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| | |||| ||| |||||||||||| |||| | |||||| |||||||||||||||||| ||||| |
|
|
| T |
55864696 |
atggaggtgagggaagatttcatgatctcaccaac---tggtcacagtgaagcaactcttagaatgactcattttctaaaacccatttcaaattccattc |
55864600 |
T |
|
| Q |
181 |
atga---atcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttcactgggtggcgccaccc |
277 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||| ||||| ||| ||| ||||||| |||| ||||||||| || ||||||| ||| ||||| ||||| |
|
|
| T |
55864599 |
atgaaccatcaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggcctttgaaattccatttcaatggttggcgtcaccc |
55864500 |
T |
|
| Q |
278 |
acaagacaaatgggtttgttgggttgatc |
306 |
Q |
| |
|
|||||| |||||| ||| ||||||||||| |
|
|
| T |
55864499 |
acaagagaaatggatttattgggttgatc |
55864471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 450 - 722
Target Start/End: Complemental strand, 6398039 - 6397767
Alignment:
| Q |
450 |
tttccatttgctgaagctacaatcactttggaggatattatggttttgggtggttaccctgtcatcggcgatcctgttttcatctcacttgaagacacaa |
549 |
Q |
| |
|
||||| |||| ||| || ||||| |||||||||||||| || || ||||| | |||||| ||| || ||||||||||||| | | || ||||| | |
|
|
| T |
6398039 |
tttccctttggtgaggcaacaataactttggaggatatcattgtcttgggggtctaccctatcactggggatcctgttttcacccaagttaaagaccaag |
6397940 |
T |
|
| Q |
550 |
aaatgagagaggtagaaaacaaattgatccttgcaagacagcaacttactaatcggaaacaacgtcacgcgtacacatcaatgtggatggatatgttcgc |
649 |
Q |
| |
|
||||| || |||| ||||| ||||||||||| | |||| |||||||||| ||| |||| || |||| || |||| |||| | ||||||||||||||| |
|
|
| T |
6397939 |
aaatgtgataggtggaaaataaattgatcctagaaagaaagcaacttacaaataggaatgaaggtcatgcttacatatcattatggatggatatgttcat |
6397840 |
T |
|
| Q |
650 |
tgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaa |
722 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||| ||| ||||||||| || ||| |||| |||| |
|
|
| T |
6397839 |
cgataaaggtagtgaaattgaacatgaagccttccttgctacctggttgtcaatttgtgcttttcctcctaaa |
6397767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 550 - 712
Target Start/End: Original strand, 6398178 - 6398340
Alignment:
| Q |
550 |
aaatgagagaggtagaaaacaaattgatccttgcaagacagcaacttactaatcggaaacaacgtcacgcgtacacatcaatgtggatggatatgttcgc |
649 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | |||| || ||||||| ||| ||| || ||| | | ||||||| | |||||||||||||| |
|
|
| T |
6398178 |
aaatgagagaggtggaaaacaaattgatcctagaaagaaagaaacttaccaatacgaataaaggtcccacttacacatagttatggatggatatgtttat |
6398277 |
T |
|
| Q |
650 |
tgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgtttt |
712 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||| |||| ||| |||||||||||| |
|
|
| T |
6398278 |
ctataaaggtagtgaaattgaacatgaagccttccttgctaattggttgttaatttttgtttt |
6398340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 4e-40; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 79 - 306
Target Start/End: Original strand, 47331558 - 47331788
Alignment:
| Q |
79 |
tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat |
178 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| |||||| ||| |||||||||||| |||| || |||||| |||||||||||||||||| ||| |
|
|
| T |
47331558 |
tgatgaaggtgagggaagatttcatgatctcaccaactggtg---acagtgaagcaactcttagaatggctcattttctaaaacccatttcaaattccat |
47331654 |
T |
|
| Q |
179 |
tcatgaa------tcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttcactgggtggcgc |
272 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||| ||||| ||| ||| ||||||| |||| | ||||||| || ||||||| ||| ||||| |
|
|
| T |
47331655 |
tcatgaaccatcatcaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggtctttgaaattccatttcaatggatggcgt |
47331754 |
T |
|
| Q |
273 |
cacccacaagacaaatgggtttgttgggttgatc |
306 |
Q |
| |
|
||||||||||| |||||| ||| ||||||||||| |
|
|
| T |
47331755 |
cacccacaagagaaatggatttattgggttgatc |
47331788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 79 - 306
Target Start/End: Complemental strand, 45887719 - 45887492
Alignment:
| Q |
79 |
tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat |
178 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| | |||| ||| |||||||||||| |||| || |||||| |||||||||||||||||| ||| |
|
|
| T |
45887719 |
tgatggaggtgagggaagatttcatgatctcaccaac---tggtcacagtgaagcaactcttagaatggctcattttctaaaacccatttcaaattccat |
45887623 |
T |
|
| Q |
179 |
tcatga---atcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttcactgggtggcgccac |
275 |
Q |
| |
|
| |||| || ||||||||||||||| ||||||||| ||||| ||| ||| ||||||| |||| ||||||||| || ||||||| ||| ||||| ||| |
|
|
| T |
45887622 |
ttatgaaccatgaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggcctttgaaattccatttcaatggatggcgtcac |
45887523 |
T |
|
| Q |
276 |
ccacaagacaaatgggtttgttgggttgatc |
306 |
Q |
| |
|
|||||||| ||||| ||| ||||||||||| |
|
|
| T |
45887522 |
ccacaagagaaatgtatttattgggttgatc |
45887492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 79 - 306
Target Start/End: Complemental strand, 48259686 - 48259459
Alignment:
| Q |
79 |
tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat |
178 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| | ||| ||| |||| ||||||| |||| || |||||| |||||| ||||||||||| ||| |
|
|
| T |
48259686 |
tgatgaaggtgagggaagatttcatgatctcaccaaccggtc---acagtgaaacaactcttagaatggctcattttctaaaactcatttcaaattccat |
48259590 |
T |
|
| Q |
179 |
tcatgaa---tcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttcactgggtggcgccac |
275 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||| ||||| ||| ||| ||||||| |||| ||||||||| || ||||||| ||| ||||| ||| |
|
|
| T |
48259589 |
tcatgaaccatcaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggcctttgaaattccatttcaatggatggcgtcac |
48259490 |
T |
|
| Q |
276 |
ccacaagacaaatgggtttgttgggttgatc |
306 |
Q |
| |
|
|||||||| |||||| ||| ||||||||||| |
|
|
| T |
48259489 |
ccacaagagaaatggatttattgggttgatc |
48259459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 563 - 668
Target Start/End: Complemental strand, 12581222 - 12581117
Alignment:
| Q |
563 |
agaaaacaaattgatccttgcaagacagcaacttactaatcggaaacaacgtcacgcgtacacatcaatgtggatggatatgttcgctgataaaggtagt |
662 |
Q |
| |
|
||||| |||||||||||||| |||| |||||||||| ||| |||| || ||||| ||||||||| | ||||||||||||||| |||||||||| | |
|
|
| T |
12581222 |
agaaagcaaattgatccttgaaagaaagcaacttacaaataggaatgaaggtcacaattacacatcattatggatggatatgttcaacgataaaggtaat |
12581123 |
T |
|
| Q |
663 |
gaaatt |
668 |
Q |
| |
|
|||||| |
|
|
| T |
12581122 |
gaaatt |
12581117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 665 - 717
Target Start/End: Original strand, 12581424 - 12581476
Alignment:
| Q |
665 |
aattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctc |
717 |
Q |
| |
|
||||||||||||||| || |||||||||||| |||||||||||||||| |||| |
|
|
| T |
12581424 |
aattgaacatgaagccttccttgctacttggttgtcaatttttgtttttcctc |
12581476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 665 - 720
Target Start/End: Original strand, 12497241 - 12497296
Alignment:
| Q |
665 |
aattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcata |
720 |
Q |
| |
|
||||||||||||||| || |||||||| ||| |||||||||||||||| ||||||| |
|
|
| T |
12497241 |
aattgaacatgaagccttccttgctacctggttgtcaatttttgtttttcctcata |
12497296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 665 - 720
Target Start/End: Original strand, 12521106 - 12521161
Alignment:
| Q |
665 |
aattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcata |
720 |
Q |
| |
|
||||||||||||||| || |||||||| ||| |||||||||||||||| ||||||| |
|
|
| T |
12521106 |
aattgaacatgaagccttccttgctacctggttgtcaatttttgtttttcctcata |
12521161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 563 - 669
Target Start/End: Complemental strand, 12497039 - 12496933
Alignment:
| Q |
563 |
agaaaacaaattgatccttgcaagacagcaacttactaatcggaaacaacgtcacgcgtacacatcaatgtggatggatatgttcgctgataaaggtagt |
662 |
Q |
| |
|
||||| |||| |||||||| |||| |||||||||| ||| |||| || ||||| ||||||||| | ||||||||||||||| |||||||||| | |
|
|
| T |
12497039 |
agaaagcaaactgatccttcaaagaaagcaacttacaaataggaatgaaggtcacaattacacatcattatggatggatatgttcaacgataaaggtaat |
12496940 |
T |
|
| Q |
663 |
gaaattg |
669 |
Q |
| |
|
||||||| |
|
|
| T |
12496939 |
gaaattg |
12496933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 563 - 669
Target Start/End: Complemental strand, 12520904 - 12520798
Alignment:
| Q |
563 |
agaaaacaaattgatccttgcaagacagcaacttactaatcggaaacaacgtcacgcgtacacatcaatgtggatggatatgttcgctgataaaggtagt |
662 |
Q |
| |
|
||||| |||| |||||||| |||| |||||||||| ||| |||| || ||||| ||||||||| | ||||||||||||||| |||||||||| | |
|
|
| T |
12520904 |
agaaagcaaactgatccttcaaagaaagcaacttacaaataggaatgaaggtcacaattacacatcattatggatggatatgttcaacgataaaggtaat |
12520805 |
T |
|
| Q |
663 |
gaaattg |
669 |
Q |
| |
|
||||||| |
|
|
| T |
12520804 |
gaaattg |
12520798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 665 - 722
Target Start/End: Complemental strand, 12519878 - 12519821
Alignment:
| Q |
665 |
aattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaa |
722 |
Q |
| |
|
||||||||||||||| || ||| |||||| |||||||||||||||| ||||||||| |
|
|
| T |
12519878 |
aattgaacatgaagccttccttttaacttggttgtcaatttttgtttttcctcataaa |
12519821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 665 - 722
Target Start/End: Complemental strand, 12580167 - 12580110
Alignment:
| Q |
665 |
aattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaa |
722 |
Q |
| |
|
|||||||||||| || || ||| ||||||| |||||||||||||||| ||||||||| |
|
|
| T |
12580167 |
aattgaacatgaggccttcctttttacttggttgtcaatttttgtttttcctcataaa |
12580110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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