View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2888R-Insertion-1 (Length: 980)

Name: NF2888R-Insertion-1
Description: NF2888R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2888R-Insertion-1
NF2888R-Insertion-1
[»] chr5 (10 HSPs)
chr5 (9-958)||(29711508-29712457)
chr5 (127-667)||(29688295-29688827)
chr5 (132-667)||(29696404-29696940)
chr5 (263-352)||(179357-179446)
chr5 (841-902)||(29697220-29697280)
chr5 (704-755)||(29688941-29688992)
chr5 (270-394)||(9120069-9120193)
chr5 (620-665)||(9120420-9120465)
chr5 (841-902)||(29689104-29689164)
chr5 (123-168)||(42562181-42562226)
[»] chr3 (1 HSPs)
chr3 (431-580)||(47451345-47451494)
[»] chr4 (16 HSPs)
chr4 (265-404)||(48147334-48147473)
chr4 (704-757)||(48734629-48734682)
chr4 (263-300)||(48863570-48863607)
chr4 (323-412)||(49043781-49043870)
chr4 (433-521)||(48903421-48903509)
chr4 (324-383)||(48864395-48864454)
chr4 (602-665)||(48871196-48871259)
chr4 (602-665)||(48876500-48876563)
chr4 (602-665)||(48886882-48886945)
chr4 (310-396)||(7790426-7790512)
chr4 (310-352)||(7878729-7878771)
chr4 (703-756)||(48871410-48871463)
chr4 (703-756)||(48876714-48876767)
chr4 (263-300)||(49040871-49040908)
chr4 (710-747)||(49058043-49058080)
chr4 (606-659)||(50669722-50669775)
[»] chr8 (2 HSPs)
chr8 (431-513)||(4030300-4030382)
chr8 (325-383)||(15349244-15349302)
[»] chr1 (3 HSPs)
chr1 (266-305)||(24310521-24310560)
chr1 (266-300)||(24367473-24367507)
chr1 (266-300)||(24416083-24416117)
[»] chr7 (1 HSPs)
chr7 (480-518)||(30124824-30124862)


Alignment Details
Target: chr5 (Bit Score: 789; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 789; E-Value: 0
Query Start/End: Original strand, 9 - 958
Target Start/End: Complemental strand, 29712457 - 29711508
Alignment:
Q  9 cttttctcattgagagctgatgcgtgggacgaaattgagggtgataattatttctcttattgcctggcccgtgaaaattccaaagtagagccgttcttaa 108  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712457 cttttctcattgagagctgatgcgtggaacgaaattgagggtgataattatttctcttattgcctggcccgtgaaaattccaaagtagagccgttcttaa 29712358  T
Q  109 atggggctattcacttcttaaacggggctattcactggttggctctttgttatgatatatcaacgaatgttattcttggctatcatttaatgcaaaggga 208  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712357 atggggctattcacttcttaaatggggctattcactggttggctctttgttatgatatatcaacgaatgttattcttggctatcatttaatgcaaaggga 29712258  T
Q  209 gcttctagagttgactttgccagctgatataacatctgctcctagtaaagtgtatgatttatgggtatttagaggatgtctcagtctatgggatatggca 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712257 gcttctagagttgactttgccagctgatataacatctgctcctagtaaagtgtatgatttatgggtatttagaggatgtctcagtctatgggatatggca 29712158  T
Q  309 catgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtcttttgatggaattcccagtc 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  29712157 catgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagactcttgttttgtcttttgatggaattcccagcc 29712058  T
Q  409 attatttttgtccgaaatacgatacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctaga 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29712057 attatttttgtccgaaatacgatacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgagaaaggacaactgctaga 29711958  T
Q  509 gcatcactcctactgtgacaatgaatatggatccctagtggttatgtatacagaatctctgctctcaattcctgatggtgacagtggtcaagctaagaag 608  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29711957 gcatcagtcctactgtgacaatgaatatggatccctagtggttatgtatacagaatctctgctttcaattcctgatggtgacagtggtcaagctaagaag 29711858  T
Q  609 atgaaacgaataagaagaacgaggtcttgaagtattctccttcaccattttcgtgatctacatgtactcttgggtggctgcattcgtaggttaatatgaa 708  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29711857 atgaaacgaataagaagaacgaggtcttgaagtattctccttcaccattttcgtgatctacatgtactcttgggtggctgcattcgtaggttaatatgga 29711758  T
Q  709 gtgtttattggttaaacatttgtaatatgtttattgaaaatgttgacagcnnnnnnnnngtgtgaatcactg----tagttagtgtatatttgtgggtca 804  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||         |||||||||||||    |||||||||||||||||| |||||    
T  29711757 gtgtttattggttaaacatttgtaatatgcttattgaaaatgttgacagc-ttttttttgtgtgaatcactgtatatagttagtgtatatttgt-ggtca 29711660  T
Q  805 ctgggttgtaattgttttatattttcattgaatt-----gtttatgcatgttgatcaagatcaaaatcccatttctcatttcattaatcaaagaccaaat 899  Q
    || |||||||||||||||||||||||||||| ||     |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29711659 ct-ggttgtaattgttttatattttcattgatttgatgagtttatgcatgttgatcaagatcaaaatccca-ttctcatttcattaatcaaagaccaaat 29711562  T
Q  900 cagtcaggagtaatacatactttgccaaactagttggaaaaacaggtataataacaatt 958  Q
     |||||  |||||||||||||||||||||    |||||||||| |||||||||||||||    
T  29711561 aagtca-cagtaatacatactttgccaaa----ttggaaaaacgggtataataacaatt 29711508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 127 - 667
Target Start/End: Original strand, 29688295 - 29688827
Alignment:
Q  127 taaacggggctattcactggttggctctttgttatgatatatcaacgaatgttattcttggctatcatttaatgcaaagggagcttctagagttgacttt 226  Q
    |||| |||| |||||||||||||||| ||  |||||||| ||||| |||||||||| |||| | |||||||| | ||||| | ||| |||||||| ||||    
T  29688295 taaatggggttattcactggttggcttttcattatgatagatcaatgaatgttattgttggatttcatttaacggaaaggaaacttatagagttgccttt 29688394  T
Q  227 gccagctgatataacatctgctcctagtaaagtgtatgatttatgggtatttagaggatgtctcagtctatgggatatg-gcacatgataatggtacagt 325  Q
    |||   || |||||    || ||||||   |||||||||||||||| |||| |||||||||||||||||||  |||||| |||| |||||||||||||||    
T  29688395 gcctattggtataaataatggtcctag---agtgtatgatttatggctattcagaggatgtctcagtctatttgatatgtgcac-tgataatggtacagt 29688490  T
Q  326 tgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtcttttgatggaattcccagtcattatttttgtccgaaa 425  Q
    |||||||||||||||| ||||||||||||||  ||| |||||||| |||| ||| ||| | ||||||| ||  ||||||| ||| || ||||||||||||    
T  29688491 tgaaatatgggtgatgaaaaaatacaatgtgcaatcgtcttggacaaagactctcgttctttcttttggtgacattcccattcactacttttgtccgaaa 29688590  T
Q  426 tacgatacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatcactcctactgtg 525  Q
    ||   |||||||||||||||||||||||||||  | | |   ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||  |    
T  29688591 tattgtacaaaaagtggtgatatcgttggaaccgacgat---aatgtattggccaagtataatgataaaggacagctgctagagcatcactcctactcgg 29688687  T
Q  526 acaatgaatatggatccctagtggttatgtatacagaatctctgctctcaattcctgatggtgacagtggtcaagc-taagaagatgaaacgaataagaa 624  Q
    || ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||| || ||||||||||  ||| |  | ||    
T  29688688 accatgaatatggatccctagtggttatgtatacagaatctctgctttcacttcctggtggtgacagtgatcaggcttaagaagatg--acgca-gacaa 29688784  T
Q  625 gaacgaggtcttgaagtattctccttcaccattttcgtgatct 667  Q
    ||| ||||| || |||||||| |||||||||||||| ||||||    
T  29688785 gaatgaggttttcaagtattccccttcaccattttcatgatct 29688827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 132 - 667
Target Start/End: Original strand, 29696404 - 29696940
Alignment:
Q  132 ggggctattcactggttggctctttgttatgatatatcaacgaatgttattcttggctatcatttaatgcaaagggagcttctagagttgactttgccag 231  Q
    ||||||||||||||||||||| || || |||||||||||| |  ||||||| ||| || |||||||||  ||||| | ||||||||||||  |||||||     
T  29696404 ggggctattcactggttggcttttcgtaatgatatatcaatgcctgttattgttgcctttcatttaattgaaaggaaacttctagagttgcgtttgccaa 29696503  T
Q  232 ctgatataacatctgctcctagtaaagtgtatgatttatgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaat 331  Q
     ||| ||||    || |||||| |  | ||||||||||||||| | |||||||||||||  ||||||| ||||    | |||||  | |||| || ||||    
T  29696504 atgagataatcaatggtcctagcagggcgtatgatttatgggtgtatagaggatgtctcgctctatggcatattttgcctgatagagttacatttcaaat 29696603  T
Q  332 atgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtcttttgatggaattcccagtcattatttttgtccgaaatacgat 431  Q
    |||||||||||||||||||||||||  ||| ||||||||||||| ||||||  ||||||||||||| | |||   ||| |  ||||| ||||||||| ||    
T  29696604 atgggtgatggaaaaatacaatgtgcaatcctcttggactaagactcttgtcctgtcttttgatggcaatcctgctcactccttttggccgaaatactat 29696703  T
Q  432 acaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatcactcctactgtgacaatg 531  Q
    ||||||||||||||||||||||||| |||     ||  || ||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| |     
T  29696704 acaaaaagtggtgatatcgttggaagaaacatgcgttgtgcattggccaagtataatgacaaaggacagctgcaagaacatcactcctactgtgacagtc 29696803  T
Q  532 aatatggatccctagtggttatgtatacagaatctctgctctcaattcctgatggtgacagtggtcaag-ctaagaagatgaaacgaataagaagaacga 630  Q
    |||||| ||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||  ||||||||||| |  |  |||||||| ||    
T  29696804 aatatgtatccccagtggttatgtatacagaatctctgctttcaattcctggtggtgacagtggtcaagtttaagaagatgacagaaccaagaagaatga 29696903  T
Q  631 ggtcttgaagtattctccttcaccattttcgtgatct 667  Q
    ||| |||||||||||| ||||||||||||| ||||||    
T  29696904 ggttttgaagtattcttcttcaccattttcatgatct 29696940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 263 - 352
Target Start/End: Original strand, 179357 - 179446
Alignment:
Q  263 tgatttatgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaa 352  Q
    |||| ||||||||||| ||  || ||||||| |||||| |||||   ||||||||| |||||||||||||||||||||| || |||||||    
T  179357 tgatgtatgggtatttggacaatttctcagtatatgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatacaa 179446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 841 - 902
Target Start/End: Original strand, 29697220 - 29697280
Alignment:
Q  841 ttatgcatgttgatcaagatcaaaatcccatttctcatttcattaatcaaagaccaaatcag 902  Q
    ||||||||||||||||| ||||||||| || |||||||||||| ||||||||||||| ||||    
T  29697220 ttatgcatgttgatcaatatcaaaatctca-ttctcatttcataaatcaaagaccaactcag 29697280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 704 - 755
Target Start/End: Original strand, 29688941 - 29688992
Alignment:
Q  704 atgaagtgtttattggttaaacatttgtaatatgtttattgaaaatgttgac 755  Q
    ||||| ||||||||||| ||||||||||| | ||||||||||||||||||||    
T  29688941 atgaaatgtttattggtcaaacatttgtattgtgtttattgaaaatgttgac 29688992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 270 - 394
Target Start/End: Original strand, 9120069 - 9120193
Alignment:
Q  270 tgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttgga 369  Q
    ||||||||| ||| || ||||||| |||||| |||||    || ||||| |||||||||||||||||||||| || ||||||| |||   || |||||||    
T  9120069 tgggtatttggagaatttctcagtatatgggctatggattttgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcctcttgga 9120168  T
Q  370 ctaagattcttgttttgtcttttga 394  Q
      || | ||||||||||||| ||||    
T  9120169 agaaaactcttgttttgtctattga 9120193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 620 - 665
Target Start/End: Original strand, 9120420 - 9120465
Alignment:
Q  620 aagaagaacgaggtcttgaagtattctccttcaccattttcgtgat 665  Q
    |||||||| ||||| ||||| |||||||||||||||||||| ||||    
T  9120420 aagaagaatgaggttttgaaatattctccttcaccattttcttgat 9120465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 841 - 902
Target Start/End: Original strand, 29689104 - 29689164
Alignment:
Q  841 ttatgcatgttgatcaagatcaaaatcccatttctcatttcattaatcaaagaccaaatcag 902  Q
    ||||| ||||||||||| ||||||||| || |||| ||||||| ||||||||||||| ||||    
T  29689104 ttatgaatgttgatcaatatcaaaatctca-ttcttatttcataaatcaaagaccaactcag 29689164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 42562226 - 42562181
Alignment:
Q  123 ttcttaaacggggctattcactggttggctctttgttatgatatat 168  Q
    ||||| || |||||||||||||||||||||||| || |||||||||    
T  42562226 ttcttcaatggggctattcactggttggctcttcgtcatgatatat 42562181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 431 - 580
Target Start/End: Complemental strand, 47451494 - 47451345
Alignment:
Q  431 tacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatcactcctactgtgacaat 530  Q
    ||||||||||||||||||  |||||||| ||| || ||  | |||||  ||||||||||||||||||||  || |||||||||  ||||| ||| || ||    
T  47451494 tacaaaaagtggtgatattattggaacagatgatgataccggattggttaagtataatgacaaaggacagttgttagagcatcgttcctattgtaacgat 47451395  T
Q  531 gaatatggatccctagtggttatgtatacagaatctctgctctcaattcc 580  Q
      || ||||| || |||||||||||| ||||| |||||||| ||| ||||    
T  47451394 ccatgtggatgccaagtggttatgtacacagagtctctgctttcacttcc 47451345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000009; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 265 - 404
Target Start/End: Complemental strand, 48147473 - 48147334
Alignment:
Q  265 atttatgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttc 364  Q
    |||| ||||||||| ||  || ||||||||||  || |||||  ||||| ||| | | ||||||||||||||||||| || ||||||| |||   || ||    
T  48147473 atttgtgggtatttggacaatttctcagtctaacgggtatggatcatgacaatagcagagttgaaatatgggtgatgaaagaatacaaagtgcattcgtc 48147374  T
Q  365 ttggactaagattcttgttttgtcttttgatggaattccc 404  Q
    ||||||||||| ||||  ||||||| ||||||| ||||||    
T  48147373 ttggactaagactcttaatttgtctattgatggcattccc 48147334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 704 - 757
Target Start/End: Complemental strand, 48734682 - 48734629
Alignment:
Q  704 atgaagtgtttattggttaaacatttgtaatatgtttattgaaaatgttgacag 757  Q
    ||||| |||||||| || ||||||||||||||||||||| |||| |||||||||    
T  48734682 atgaaatgtttattagtcaaacatttgtaatatgtttatcgaaattgttgacag 48734629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 263 - 300
Target Start/End: Original strand, 48863570 - 48863607
Alignment:
Q  263 tgatttatgggtatttagaggatgtctcagtctatggg 300  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  48863570 tgatttatgggtatttagaggatctctcagtctatggg 48863607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 49043870 - 49043781
Alignment:
Q  323 agttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtcttttgatggaattcccagtcatta 412  Q
    ||||||||||||||||||| || ||||||| |||   || || |||||||||| ||||||||| ||| ||||||  ||||||| ||||||    
T  49043870 agttgaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgttttttctattgatgtcattcccactcatta 49043781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 433 - 521
Target Start/End: Original strand, 48903421 - 48903509
Alignment:
Q  433 caaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatcactcctac 521  Q
    |||||| |||||| ||| |||||||||| | ||||| |  |||||  ||||||||||||||||||||  | |||||| |||||||||||    
T  48903421 caaaaaatggtgacatcattggaacaaaagatggtactagattggtgaagtataatgacaaaggacagttcctagagtatcactcctac 48903509  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 324 - 383
Target Start/End: Original strand, 48864395 - 48864454
Alignment:
Q  324 gttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgtt 383  Q
    |||||||||||||||||| || ||||||| |||   || |||||||||||||||||||||    
T  48864395 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgtt 48864454  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 665
Target Start/End: Original strand, 48871196 - 48871259
Alignment:
Q  602 taagaagatgaaacgaataagaagaacgaggtcttgaagtattctccttcaccattttcgtgat 665  Q
    ||||||| ||| || || |||||||| ||||| ||||| |||||||||||||||||||| ||||    
T  48871196 taagaaggtgacacaaacaagaagaatgaggttttgaattattctccttcaccattttcttgat 48871259  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 665
Target Start/End: Original strand, 48876500 - 48876563
Alignment:
Q  602 taagaagatgaaacgaataagaagaacgaggtcttgaagtattctccttcaccattttcgtgat 665  Q
    ||||||| ||| || || |||||||| ||||| ||||| |||||||||||||||||||| ||||    
T  48876500 taagaaggtgacacaaacaagaagaatgaggttttgaattattctccttcaccattttcttgat 48876563  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 665
Target Start/End: Original strand, 48886882 - 48886945
Alignment:
Q  602 taagaagatgaaacgaataagaagaacgaggtcttgaagtattctccttcaccattttcgtgat 665  Q
    ||||||| ||| || || |||||||| ||||| ||||| |||||||||||||||||||| ||||    
T  48886882 taagaaggtgacacaaacaagaagaatgaggttttgaattattctccttcaccattttcttgat 48886945  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 310 - 396
Target Start/End: Original strand, 7790426 - 7790512
Alignment:
Q  310 atgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtcttttgatg 396  Q
    ||||||||| |||| ||||||||||||||||| || ||||||| |||   || ||||||||||| | ||||||| | ||| ||||||    
T  7790426 atgataatgatacaattgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctttctattgatg 7790512  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 310 - 352
Target Start/End: Original strand, 7878729 - 7878771
Alignment:
Q  310 atgataatggtacagttgaaatatgggtgatggaaaaatacaa 352  Q
    ||||||||| |||||||||||||||||||||| || |||||||    
T  7878729 atgataatgatacagttgaaatatgggtgatgaaagaatacaa 7878771  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 703 - 756
Target Start/End: Original strand, 48871410 - 48871463
Alignment:
Q  703 tatgaagtgtttattggttaaacatttgtaatatgtttattgaaaatgttgaca 756  Q
    |||||| ||||||||| |||   |||| ||||||||||||||||||||||||||    
T  48871410 tatgaactgtttattgcttagctatttataatatgtttattgaaaatgttgaca 48871463  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 703 - 756
Target Start/End: Original strand, 48876714 - 48876767
Alignment:
Q  703 tatgaagtgtttattggttaaacatttgtaatatgtttattgaaaatgttgaca 756  Q
    |||||| ||||||||| |||   |||| ||||||||||||||||||||||||||    
T  48876714 tatgaactgtttattgcttagctatttataatatgtttattgaaaatgttgaca 48876767  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 300
Target Start/End: Complemental strand, 49040908 - 49040871
Alignment:
Q  263 tgatttatgggtatttagaggatgtctcagtctatggg 300  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  49040908 tgatttatgggtatttaaaggatttctcagtctatggg 49040871  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 710 - 747
Target Start/End: Complemental strand, 49058080 - 49058043
Alignment:
Q  710 tgtttattggttaaacatttgtaatatgtttattgaaa 747  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  49058080 tgtttattggtcaaacacttgtaatatgtttattgaaa 49058043  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 606 - 659
Target Start/End: Original strand, 50669722 - 50669775
Alignment:
Q  606 aagatgaaacgaataagaagaacgaggtcttgaagtattctccttcaccatttt 659  Q
    ||||||| || || ||||||||| |||| ||||| |||||||||||||||||||    
T  50669722 aagatgacacaaacaagaagaacaaggttttgaaatattctccttcaccatttt 50669775  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 431 - 513
Target Start/End: Complemental strand, 4030382 - 4030300
Alignment:
Q  431 tacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatc 513  Q
    ||||| ||||||||||||  |||||||| ||| ||||| || |||||  |||||| |||||||||||||  ||||||||||||    
T  4030382 tacaataagtggtgatattattggaacatatggtggtactgaattggtgaagtatgatgacaaaggacagttgctagagcatc 4030300  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 15349244 - 15349302
Alignment:
Q  325 ttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgtt 383  Q
    ||||||||||||||||| || ||||||| ||||  ||||||||||| ||||||||||||    
T  15349244 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgtt 15349302  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 266 - 305
Target Start/End: Original strand, 24310521 - 24310560
Alignment:
Q  266 tttatgggtatttagaggatgtctcagtctatgggatatg 305  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  24310521 tttatgggtatttagaggatttctcagtctatgggttatg 24310560  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 266 - 300
Target Start/End: Original strand, 24367473 - 24367507
Alignment:
Q  266 tttatgggtatttagaggatgtctcagtctatggg 300  Q
    |||||||||||||||||||| ||||||||||||||    
T  24367473 tttatgggtatttagaggatttctcagtctatggg 24367507  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 266 - 300
Target Start/End: Original strand, 24416083 - 24416117
Alignment:
Q  266 tttatgggtatttagaggatgtctcagtctatggg 300  Q
    |||||||||||||||||||| ||||||||||||||    
T  24416083 tttatgggtatttagaggatttctcagtctatggg 24416117  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 480 - 518
Target Start/End: Complemental strand, 30124862 - 30124824
Alignment:
Q  480 aagtataatgacaaaggacaactgctagagcatcactcc 518  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  30124862 aagtttaatgacaaaggacagctgctagagcatcactcc 30124824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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