View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2888R-Insertion-2 (Length: 937)
Name: NF2888R-Insertion-2
Description: NF2888R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2888R-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 848; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 848; E-Value: 0
Query Start/End: Original strand, 8 - 920
Target Start/End: Original strand, 14726452 - 14727362
Alignment:
| Q |
8 |
attagtatcttgtaatttttatacatttcattttctgaaaccagggatttcgcctgaagaaggacgcaaaaaacttaaactgtcaagtgatagcttgcca |
107 |
Q |
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| T |
14726452 |
attagtatcttgtaatttttatacatttcattttctgaaaccagggattttgcctgaagaaggacgcaaaaaacttaaactgtcaagtgatagcttgcca |
14726551 |
T |
|
| Q |
108 |
tgtttaacacatggtgatgttgtagattacagcagtccgtatgcaatttcaaatgttataaatcgcttagagagtggaaaatttggaagtgtgacaaaaa |
207 |
Q |
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| T |
14726552 |
tgtttaacacatggtgatgttgtagattacagcagtccgtatgcaatttcaaatgttataaatcgcttagagagtggaaaatttggaagtgtgacaaaaa |
14726651 |
T |
|
| Q |
208 |
atattgaagaccttataacccagaaaatgcaaatattgggcccttactttgcaaaatgtcctagacttgttaatcaactattgagagtggtgacagatca |
307 |
Q |
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| T |
14726652 |
atattgaagaccttataacccagaaaatgcaaatattgggcccttactttgcaaaatgtcctagacttgttaatcaactattgagagtggtgacagatca |
14726751 |
T |
|
| Q |
308 |
tgatgaagaaactcccaacatggaaaataagaatgttaatggtttgcaacatgataatgtcatagatttggattcggacggggagcacaccgaaaaggat |
407 |
Q |
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| T |
14726752 |
tgatgaagaaactcccaacatggaaaataagaacgttaatggtttgcaacatgataatgtcatagatttggattcggacggggagcacactgaaaaggat |
14726851 |
T |
|
| Q |
408 |
gttttggcaccaaaaagaggatataatgttactgcagtaccatttatcattgattcagatgaggaggatgataaggatcatggtcatgatactgttccaa |
507 |
Q |
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| T |
14726852 |
attttggcaccaaaaagaggatataatgttactgcagtaccatttatcattgattcagatgaggaggatgataaggatcatggtcatgatactgttccaa |
14726951 |
T |
|
| Q |
508 |
cagatcatgatgaagaaactccctacattgaaagtgaaaaagctgctggtatgtcctatgaaaatgttacgattgattcaaatgaggaagatgataggga |
607 |
Q |
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| T |
14726952 |
cagatcatgatgaagaaactccctacattgaaagtgaaaaagctgctggtatgtcctatgaaaatgttaccattgattcaaatgaggaagatgataggga |
14727051 |
T |
|
| Q |
608 |
tcnnnnnnnggatattttggcaccgaaaagagaaaatgatgttcctccagcaccatttcatgaagtcattatcatcgattcagacgaagaagatgatagg |
707 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14727052 |
tcaaaaaaaggatattttggcaccgaaaagagaaaatgatgttcctccagcaccatttcatgaagtcattatcatcgattcagacgaagaagatgatagg |
14727151 |
T |
|
| Q |
708 |
gatcatgatgaagaaactcccaacatggaaaatgaaaaagttactggtttgtcctgtcaaaatgttatcatcgattcagatgaggaagatgataggaatc |
807 |
Q |
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| T |
14727152 |
gatcatgatgaagaaactcccaacatggaaaatgaaaaagttactggtttgtcctgtcaaaatgttatcatcgattcagatgaggaagatgataggaatc |
14727251 |
T |
|
| Q |
808 |
atgatgaagaaactcccaacatggaaaatgaaaaaattactgggtatgtcctgtcaaaatgttatcattgatttcaaatggggaagatgacagagatcaa |
907 |
Q |
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| T |
14727252 |
atgatgaagaaactcccaacatggaaaatgagaaagttact-ggtatgtcctgtcaaaatgttatcattga-ttcaaatggggaagatgacagagatcaa |
14727349 |
T |
|
| Q |
908 |
acttcttttcttc |
920 |
Q |
| |
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||||||||||||| |
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| T |
14727350 |
acttcttttcttc |
14727362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 48 - 314
Target Start/End: Complemental strand, 13957011 - 13956745
Alignment:
| Q |
48 |
ccagggatttcgcctgaagaaggacgcaaaaaacttaaactgtcaagtgatagcttgccatgtttaacacatggtgatgttgtagattacagcagtccgt |
147 |
Q |
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||||| ||||| |||| |||||| ||||||||||||| | ||||||||| | |||||||||| | ||| | | | ||||| |||||||| | ||||| |
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| T |
13957011 |
ccaggaatttcatctgaggaaggatgcaaaaaacttaagttatcaagtgatggtttgccatgttcagtacaagctaaggttgttgattacagtaatccgt |
13956912 |
T |
|
| Q |
148 |
atgcaatttcaaatgttataaatcgcttagagagtggaaaatttggaagtgtgacaaaaaatattgaagaccttataacccagaaaatgcaaatattggg |
247 |
Q |
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| T |
13956911 |
atgcaatcacagaagttttaaatagtttagagggtggagaatatggtagtgtgacaaaggatattgatgcccttataacccgaaaaatgcaagtattagg |
13956812 |
T |
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| Q |
248 |
cccttactttgcaaaatgtcctagacttgttaatcaactattgagagtggtgacagatcatgatgaa |
314 |
Q |
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||| |||||||| |||| ||||| ||| || ||| | | |||| ||||||||||| ||| |||||| |
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| T |
13956811 |
cccctactttgctaaatatcctacccttattgatcgattcttgaaagtggtgacagttcaggatgaa |
13956745 |
T |
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