View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2888R-Insertion-3 (Length: 855)
Name: NF2888R-Insertion-3
Description: NF2888R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2888R-Insertion-3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 573; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 243 - 855
Target Start/End: Original strand, 42183606 - 42184218
Alignment:
| Q |
243 |
ctgtttcttgaaatttgaacttgttgaagcagtggatggtggtttcaatctgaggctatcaaataggaacaatactgatccagaggctggtaggtgcaaa |
342 |
Q |
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| T |
42183606 |
ctgtttcttgaaatttgaacttgttgaagcagtggatggtggtttcaatttgaggctatcaaataggaacaatactgatccagaggctggtaggtgcaaa |
42183705 |
T |
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| Q |
343 |
agaacagatggtaaaaaatggagatgttctagagatgtagctcctaataacaggtactgtgaaaggcatatgcatagaggtcgtccccgttcaagaaagc |
442 |
Q |
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| T |
42183706 |
agaacagatggtaaaaaatggagatgttctaaagatgtagctcttaataacaggtattgtgaaaggcatatgcatagaggtcgtccccgttcaagaaagc |
42183805 |
T |
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| Q |
443 |
ctgtggaacttcacacaaataacaatagcaatagtcatcatcaaatcaaaaaggctcgttgtgattctaaccctttttctgtgcctgattttactatggc |
542 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42183806 |
ctgtggaacttcacacaaataacaatagcaatagtcatcatcaaatcaaaaaggctcgttgtgattctaaccctttttctgtgcctgattttactgtggc |
42183905 |
T |
|
| Q |
543 |
tgctcctaatccaactacaagaaaatatggatcttcatcacattttcttgcttctactccccttcatccttatctccaatcttcccttgctttgcataat |
642 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42183906 |
tgttcctaatccaactacaagaaaatatggatcttcatcacattttcttgcttctactccccttcatccttatctccaatcttccctttctttgcataat |
42184005 |
T |
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| Q |
643 |
agcagctttgagggttcaaataagcaaccaaggtgagtttatatctgtcttttgctatatctgtttagaatcacatgttttgattcatatcatatgagtt |
742 |
Q |
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| T |
42184006 |
agcagctttgagggttcaaataagcaaccaaggtgagtttatatctgtattttgctatatctgtttagaatcacatgttttgattcatatcatatgagtt |
42184105 |
T |
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| Q |
743 |
tcatgaaatcaggttgccaatgtgattttgttgaaggcttaagcttcaaagtatagcttttgctaaaatctgtggttcttctaaatttatcatgaatcca |
842 |
Q |
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| T |
42184106 |
tcatgaaatcaggttgccaatgtgattttgttgaaggcttaagcttctaagtatagcttttgctaaaatctgtgattcttctaaatttatcatgaatcca |
42184205 |
T |
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| Q |
843 |
aacatgtactatg |
855 |
Q |
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| T |
42184206 |
aacatgtactatg |
42184218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 42183345 - 42183574
Alignment:
| Q |
9 |
ctatgatttacaagtacttgatggcttcacttcctgttccttctcatcttctttcatgtatggcccttttctctcttcttccttaatttcatattttgat |
108 |
Q |
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| T |
42183345 |
ctatgatttacaagtacttgatggcttcacttcctgttccttctcatcttctttcatgtatggcccttttctctcttcttccttaatttcatattttgat |
42183444 |
T |
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| Q |
109 |
gtacagacaaagaaaatatcatagcccattaactttttctgcttttttaagtccattttgagtcaaaagtttgtannnnnnnnnaccacttttcattcta |
208 |
Q |
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| T |
42183445 |
gtacagacaaagaaaataacatagcccattaactttttctacttttttaagtccattttgagtcaaaagtttgta-ttttttttaccacttttcattcta |
42183543 |
T |
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| Q |
209 |
tttaccttttgtcattgaatcaatgtgtggc |
239 |
Q |
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| T |
42183544 |
tttaccttttgtcattgaatcaatgtgtggc |
42183574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 331 - 450
Target Start/End: Original strand, 11196783 - 11196902
Alignment:
| Q |
331 |
ggtaggtgcaaaagaacagatggtaaaaaatggagatgttctagagatgtagctcctaataacaggtactgtgaaaggcatatgcatagaggtcgtcccc |
430 |
Q |
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| T |
11196783 |
ggtaggtgtagaagaacagatggtaaaaaatggagatgtgctagggatgctcatcctgattctaagtactgtgaccggcatatgattcgacgtcgttacc |
11196882 |
T |
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| Q |
431 |
gttcaagaaagcctgtggaa |
450 |
Q |
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| T |
11196883 |
gttcaagaaagcctgtggaa |
11196902 |
T |
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