View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2888R-Insertion-4 (Length: 554)
Name: NF2888R-Insertion-4
Description: NF2888R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2888R-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 10 - 517
Target Start/End: Complemental strand, 19755470 - 19754963
Alignment:
| Q |
10 |
aagttagcaatgccgaaacgggcaagcaacaaacacctccttccacttttaaccagtcaattgaccccatctttgaggacaatatgatagttgactctag |
109 |
Q |
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| T |
19755470 |
aagttagcaatgccgaaacgggcaagcaacaaacacctccttccacttttaaccagtcaattaaccccatctttgaggacaatatgataattgactctag |
19755371 |
T |
|
| Q |
110 |
tcctcccaaagatgatgaagaccgagagaaaatgctttctgaacctcctcaagatttgaatgctaaaagtgttgaagatgatcaacaacacatttatgaa |
209 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
19755370 |
tcctcccaaagatgatgaagacccagagaaaatgctttctgaacctcctcaagatttgaatgataaaagtgttgaagatgatcaacaacacattgatgaa |
19755271 |
T |
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| Q |
210 |
gaaaatgaagggggtccatctccggtcgaaggtggaaaaagtaaagaacctcgtgggttgaactctgaagatgatacaaagcacactgacactgatgggg |
309 |
Q |
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| T |
19755270 |
gaaaatgaagggggtccatctctggtcgaaagtggaaaaagtaaagaacctcgtgggttgaactctgaagatgatacaaagcacactgacactgatgggg |
19755171 |
T |
|
| Q |
310 |
aaggtcgtaaagaatatgtcaaagaatctaaagatgaatctaaacaagattctccaaagacaaaatctcctactccagtgacaaattctaccactgtgac |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
19755170 |
aaggtcgtaaagaatatgtcaaagaatctaaagatgaatctaaacaagattctccaaagacaaaatctcctactcgagtgacaaattctaccagtgtgac |
19755071 |
T |
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| Q |
410 |
tataagtcaagaggagtttgatgtgctgaaagaacgtgacccttttgaggcccttgatcttatgttggttggtaatatcctcccttcaaatactgacaca |
509 |
Q |
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| T |
19755070 |
aataagtcaagaggagtttgatgtgctgaaagaacgtgacccttttgaggcccttgatcttatgttggttggtaatatcctcccttcaaatactgacaca |
19754971 |
T |
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| Q |
510 |
gagtcttc |
517 |
Q |
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|||||||| |
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| T |
19754970 |
gagtcttc |
19754963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 144 - 244
Target Start/End: Original strand, 8135128 - 8135228
Alignment:
| Q |
144 |
ctttctgaacctcctcaagatttgaatgctaaaagtgttgaagatgatcaacaacacatttatgaagaaaatgaagggggtccatctccggtcgaaggtg |
243 |
Q |
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|||||||| | | ||||||||| ||||| | |||| ||||||||||||| || |||| | |||| ||| | |||||||||||||||| |||||| ||| |
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| T |
8135128 |
ctttctgatcattctcaagattcaaatgccagaagtattgaagatgatcagcatcacactgatgaggaagacgaagggggtccatctctagtcgaaagtg |
8135227 |
T |
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| Q |
244 |
g |
244 |
Q |
| |
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| |
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|
| T |
8135228 |
g |
8135228 |
T |
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